CsGy1G010200 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G010200
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ankyrin repeat-containing protein At5g02620-like isoform X1
Location	Chr1 : 6357489 .. 6359273 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCTACAAAACAAATTGAGATTTCGAGTTCGATTACGGCCAAGGAATCAAATAAAAAGGACGACCCAGAATGTGGTTGTGATCATTCCACAGTTAATAACCCTGAAAGCAAAAATAAGGCCGGTGGATCAAAAGAAGAAGATGAAGGTGAGACAGTGGAGGTTGTTGTTGAACGCCAGCTCATTCTTGCGGCGTCTATAGGAGATGACTTTCAATTGGAAGTCACCGCCGATCAGATCAATAGCTCCTGCGCCGCCACCGCGGATAACCAAACCGTAGACTCTGAAATTCCTCTTGATGAAGAAACCAAACAGCTAAGGATTAGTATGTTACGTTCTTCATTTTAATTCTCTTTTTTCTCGTAATCTCTTTATTTTCTTTAAAACTTACATTAACTTTGTTTTGGGGTTTGGATTTCAATGTTGGTTTCGTTTTATTTCATGAGCTTTAATCATTAAACATGTTTGTTTAGGCTCTAAACTTCTAAACAGTATTAATTATATTCTTTATCAAATATGAGAATAAATCGATTATATGCATTATCACGTTGATAGTATAAACACTGAAAATATATTTAGTTTGAATTGCAATTATAAGTTAGAGGAGATGTGAATGCACATTAAACATGTTTTCTTCCCAATAGAGCAAATAATTTCTTCAAATTATTTTGAAAAAATTAGATACAAAAATAGTTATTTATTTGAAAGTTGTATAATTAAAATGTTGAAAATTTAAAAACCAAAATAAAACCAACTTTAAAAATGATTGTGGACCAAAATGAAAACTTTAAAAGAATTTTGAAAATACATGTTCATATATATTTATTTAATTTCAACCTTTTTAAAAGAATTTTGAAAAAACATATTTATATTTATTTAATTTCAACCTTTTTATTAAAAGAATCTTGAAAATAGATATTCATATTTATTTAATTTCAACCTTTTTAAAAGAATTTTGAAAATAAATATTCATATTTATTTAATTTCAACTTTTTAAAAGAATATTGAAATAGTCATATTTATTTAATTTCAACCTTTTTATAAGAATTTTGAAAATAAATATTCATATTGATATTTTGATCTTGTACGTGATAAAAGTGGTAGAGAGGTGTCAATCTGATTAAAATGTAATCGTGCACTTTCTGATCCCTTTCGTCAGGTGAGTATTGTTCAAGAACATATTTATATAATTTTAGCTTCTCAAACAATATTAGATCATGTTTAGTAATTAGTTAATTTTTTTATTTTAGAATTTTGAAAATTAACTCAAATTCGTTCCTTTATTATCTACCATTTTTAACAAGAAACTAAAAGGAGAAAAGAGGGATCAGTACCATTGTTTTATTATATACTTTTTACCAATGTTTTAAAAAACTCATCCACTTTTTAAAAATCTAAAAAAGTAAACCTGTTTGGCTACTGTGATTTTTCTTTTTCTTTTTTAGATTCTAAAAATTAAACCAATAAATAATTCATTTTACATCTAAATTTCCTACTTTCCTTATCTACCATTTTCTCACATTTTCCATAAACAAGTCAAATTTTGAAGGAAAAAATGTAAATTTCGAAATTTGAACTTGAGATATAGGCAAACATATTATTGTAATTAGAAAAGGAAATAAAATGAAGTTAATTTTCGAACACACAAAACTAAATTAAAAATAAAATGGTTACCAACATGAACAGATTTTTAAAAACTTGTTTTTATTTTTGAAAGTATGGGTGAGTAATGTTCAGAAAAAAAAGGCTCAATTATTCTCAAAATCCAAAAAGGAAACTTAA

mRNA sequence

ATGAATCCTACAAAACAAATTGAGATTTCGAGTTCGATTACGGCCAAGGAATCAAATAAAAAGGACGACCCAGAATGTGGTTGTGATCATTCCACAGTTAATAACCCTGAAAGCAAAAATAAGGCCGGTGGATCAAAAGAAGAAGATGAAGGTGAGACAGTGGAGGTTGTTGTTGAACGCCAGCTCATTCTTGCGGCGTCTATAGGAGATGACTTTCAATTGGAAGTCACCGCCGATCAGATCAATAGCTCCTGCGCCGCCACCGCGGATAACCAAACCGTAGACTCTGAAATTCCTCTTGATGAAGAAACCAAACAGCTAAGGATTATATGGGTGAGTAATGTTCAGAAAAAAAAGGCTCAATTATTCTCAAAATCCAAAAAGGAAACTTAA

Coding sequence (CDS)

ATGAATCCTACAAAACAAATTGAGATTTCGAGTTCGATTACGGCCAAGGAATCAAATAAAAAGGACGACCCAGAATGTGGTTGTGATCATTCCACAGTTAATAACCCTGAAAGCAAAAATAAGGCCGGTGGATCAAAAGAAGAAGATGAAGGTGAGACAGTGGAGGTTGTTGTTGAACGCCAGCTCATTCTTGCGGCGTCTATAGGAGATGACTTTCAATTGGAAGTCACCGCCGATCAGATCAATAGCTCCTGCGCCGCCACCGCGGATAACCAAACCGTAGACTCTGAAATTCCTCTTGATGAAGAAACCAAACAGCTAAGGATTATATGGGTGAGTAATGTTCAGAAAAAAAAGGCTCAATTATTCTCAAAATCCAAAAAGGAAACTTAA

Protein sequence

MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGGSKEEDEGETVEVVVERQLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLRIIWVSNVQKKKAQLFSKSKKET

Homology

[Close]

BLAST of CsGy1G010200 vs. NCBI nr
Match: XP_004153885.1 (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus] >KGN64474.1 hypothetical protein Csa_1G058090 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 2.5e-50
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGGSKEEDEGETVEVVVER 60
           MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGGSKEEDEGETVEVVVER
Sbjct: 1   MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGGSKEEDEGETVEVVVER 60

Query: 61  QLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLRI 110
           QLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLRI
Sbjct: 61  QLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLRI 109

[Close]

BLAST of CsGy1G010200 vs. NCBI nr
Match: XP_008440571.1 (PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 5.7e-42
Identity = 99/115 (86.09%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGGSKE-EDE-----GETV 60
           MN TKQIEISSSITAKESNKKDDPECGCDHS +NNPESKNK G  KE EDE      ETV
Sbjct: 46  MNRTKQIEISSSITAKESNKKDDPECGCDHSMINNPESKNKGGSKKENEDEVEESCSETV 105

Query: 61  EVVVERQLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLRI 110
           EVVVERQLILAAS+GDDFQLEVTADQINSSCAAT DNQT+DSEIPLDEETKQLRI
Sbjct: 106 EVVVERQLILAASMGDDFQLEVTADQINSSCAATVDNQTIDSEIPLDEETKQLRI 160

[Close]

BLAST of CsGy1G010200 vs. NCBI nr
Match: XP_008440580.1 (PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X2 [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 5.7e-42
Identity = 99/115 (86.09%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGGSKE-EDE-----GETV 60
           MN TKQIEISSSITAKESNKKDDPECGCDHS +NNPESKNK G  KE EDE      ETV
Sbjct: 46  MNRTKQIEISSSITAKESNKKDDPECGCDHSMINNPESKNKGGSKKENEDEVEESCSETV 105

Query: 61  EVVVERQLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLRI 110
           EVVVERQLILAAS+GDDFQLEVTADQINSSCAAT DNQT+DSEIPLDEETKQLRI
Sbjct: 106 EVVVERQLILAASMGDDFQLEVTADQINSSCAATVDNQTIDSEIPLDEETKQLRI 160

[Close]

BLAST of CsGy1G010200 vs. NCBI nr
Match: XP_023542598.1 (uncharacterized protein LOC111802454 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.7 bits (239), Expect = 6.3e-17
Identity = 69/119 (57.98%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 1   MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGG-----------SKEED 60
           MN TK++EI +SI  KES K  DPE G      N+ +S+ K                   
Sbjct: 1   MNSTKEVEIVASIPGKESEK--DPEAGS-----NSIDSRAKFSXXXXXXXXXXXLEHGSS 60

Query: 61  EGETVEVVVERQLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLR 109
             E VEVVVER LILAASIGDDFQLEVTADQINS C ATAD QTVD E PLDEETKQLR
Sbjct: 61  LSEKVEVVVERNLILAASIGDDFQLEVTADQINSHC-ATADTQTVDIEEPLDEETKQLR 111

[Close]

BLAST of CsGy1G010200 vs. NCBI nr
Match: XP_023542597.1 (ankyrin repeat-containing protein NPR4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.7 bits (239), Expect = 6.3e-17
Identity = 69/119 (57.98%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 1   MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGG-----------SKEED 60
           MN TK++EI +SI  KES K  DPE G      N+ +S+ K                   
Sbjct: 1   MNSTKEVEIVASIPGKESEK--DPEAGS-----NSIDSRAKFSXXXXXXXXXXXLEHGSS 60

Query: 61  EGETVEVVVERQLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLR 109
             E VEVVVER LILAASIGDDFQLEVTADQINS C ATAD QTVD E PLDEETKQLR
Sbjct: 61  LSEKVEVVVERNLILAASIGDDFQLEVTADQINSHC-ATADTQTVDIEEPLDEETKQLR 111

[Close]

BLAST of CsGy1G010200 vs. TrEMBL
Match: tr|A0A0A0LU19|A0A0A0LU19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058090 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.7e-50
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGGSKEEDEGETVEVVVER 60
           MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGGSKEEDEGETVEVVVER
Sbjct: 1   MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGGSKEEDEGETVEVVVER 60

Query: 61  QLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLRI 110
           QLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLRI
Sbjct: 61  QLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLRI 109

[Close]

BLAST of CsGy1G010200 vs. TrEMBL
Match: tr|A0A1S3B1H2|A0A1S3B1H2_CUCME (ankyrin repeat-containing protein At5g02620-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484946 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.7e-42
Identity = 99/115 (86.09%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGGSKE-EDE-----GETV 60
           MN TKQIEISSSITAKESNKKDDPECGCDHS +NNPESKNK G  KE EDE      ETV
Sbjct: 46  MNRTKQIEISSSITAKESNKKDDPECGCDHSMINNPESKNKGGSKKENEDEVEESCSETV 105

Query: 61  EVVVERQLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLRI 110
           EVVVERQLILAAS+GDDFQLEVTADQINSSCAAT DNQT+DSEIPLDEETKQLRI
Sbjct: 106 EVVVERQLILAASMGDDFQLEVTADQINSSCAATVDNQTIDSEIPLDEETKQLRI 160

[Close]

BLAST of CsGy1G010200 vs. TrEMBL
Match: tr|A0A1S3B217|A0A1S3B217_CUCME (ankyrin repeat-containing protein At5g02620-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484946 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.7e-42
Identity = 99/115 (86.09%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MNPTKQIEISSSITAKESNKKDDPECGCDHSTVNNPESKNKAGGSKE-EDE-----GETV 60
           MN TKQIEISSSITAKESNKKDDPECGCDHS +NNPESKNK G  KE EDE      ETV
Sbjct: 46  MNRTKQIEISSSITAKESNKKDDPECGCDHSMINNPESKNKGGSKKENEDEVEESCSETV 105

Query: 61  EVVVERQLILAASIGDDFQLEVTADQINSSCAATADNQTVDSEIPLDEETKQLRI 110
           EVVVERQLILAAS+GDDFQLEVTADQINSSCAAT DNQT+DSEIPLDEETKQLRI
Sbjct: 106 EVVVERQLILAASMGDDFQLEVTADQINSSCAATVDNQTIDSEIPLDEETKQLRI 160

The following BLAST results are available for this feature:

BLAST of CsGy1G010200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153885.1	2.5e-50	100.00	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus] >K...	[more]
XP_008440571.1	5.7e-42	86.09	PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Cucumis ...	[more]
XP_008440580.1	5.7e-42	86.09	PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X2 [Cucumis ...	[more]
XP_023542598.1	6.3e-17	57.98	uncharacterized protein LOC111802454 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023542597.1	6.3e-17	57.98	ankyrin repeat-containing protein NPR4-like isoform X1 [Cucurbita pepo subsp. pe...	[more]

BLAST of CsGy1G010200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G010200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G010200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LU19\|A0A0A0LU19_CUCSA	1.7e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058090 PE=4 SV=1	[more]
tr\|A0A1S3B1H2\|A0A1S3B1H2_CUCME	3.7e-42	86.09	ankyrin repeat-containing protein At5g02620-like isoform X2 OS=Cucumis melo OX=3...	[more]
tr\|A0A1S3B217\|A0A1S3B217_CUCME	3.7e-42	86.09	ankyrin repeat-containing protein At5g02620-like isoform X1 OS=Cucumis melo OX=3...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G010200.1	CsGy1G010200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G010200	Csa1G058090	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G010200	CSPI01G10190	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G010200	MELO3C002414.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G010200	CsaV3_1G010260	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G010200	Cla97C03G055480	Watermelon (97103) v2	cgybwmbB032
CsGy1G010200	BhiUN316G74	Wax gourd	cgybwgoB023

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G010200	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G010200	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G010200	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G010200	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G010200	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G010200	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G010200	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G010200	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G010200	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G010200	Watermelon (97103) v1	cgybwmB010
CsGy1G010200	Silver-seed gourd	carcgybB0500
CsGy1G010200	Silver-seed gourd	carcgybB0989