CsGy1G010000 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G010000
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	probable LRR receptor-like serine/threonine-protein kinase At4g36180
Location	Chr1 : 6204515 .. 6207820 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATAAGCATTTCATAAATTGTTATGTCTCATTAGTATGGCTGCTTTTTGTAATATTGCCCTCAACTACTACTGTTGGTGATTATACTTCCAATAATAACTGTAGCTCTATTGAGAGGGAAGCCTTGATTTCCTTCAAACAAGGCTTATCAGATCCTTCTGCTCGTCTTTCTTCCTGGGTTGGCCATAATTGTTGTCAATGGCTTGGCATTACTTGTGATCTCATTTCTGGAAAAGTCATTGAAATTGATCTACACAACTCAGTGGGCTCTACCATTTCTCCATCATCTATTAGGTTTGGTGTGGATGAGAAACAACCATGGAAAGTTCCCGAGGATTTTGAACAAGAATTCCTAAAGACTTGTTTGAGAGGGAAAATAAGTTCTTCCCTACTTGAGCTCAAACATTTGAATTATCTCGACTTAAGTTTAAATAATTTTGAAGGTGCTCCAATTCCATATTTTTTTGGGATGCTCACGAGCCTAAGGTACCTCAACCTTTCTTTTGCAAATTTTAGTGGACAAGTTCCCATTTATCTAGGAAATTTATCTAATTTGAAATATCTGGATCTTTCTACTTGGAATCTAGCGTTTTTCGAATGGCCTAGTTTGCATGTTCAAAACTTGCAATGGATTTCTGGTTTTTCATCCCTTGAGTACCTTAATCTTGGAGGGGTGAATTTAAGTAGTGTCCAAGCTTCAAATTGGATGCATGCTTTTAATGGTGGACTCTCCTCTTTGTCAGAATTACGCTTAAGTCAGTGTGGTATTTCAAGTTTTGATTCTTCAGTTACCTTTTTAAATCTCAGTTCACTTAGAGTCCTTGATTTATCAGGTAACTGGATAAATTCTTCCATACCTTTGTGGCTATCTAACCTTGCTAACATTTCAACGCTTTATCTGAGTGCCAATCATTTTCAAGGTACAATTCCTCATGATTTTATAAAATTGAAAAATCTCCAACACCTAGACTTAGCATTGAATAGCGAAATTAGTGTTATTGGAGATCACCCACCAATCTCTCCACAAAATCTTTGCAAATTACGACTTTTGGACCTTTCATACAGTAGTTTTAAGGTTAAACTTGAAGAGTTTTTGGATAGTTTCTCAAATTGTACCCGGAATAGTTTGGAATCCTTGGACTTGTCAAGAAATGAATTTGTGGGAGAGATACCAAATTCATTGGGAACATTTGAGAACCTAAGAACCTTGAATCTCTTAGGTAATCAATTGTGGGGTTCACTTCCAAATTCAATAGGTAATTTGATATTGTTAAAATATTTAGATATCTCATATAACTCTTTAAATGGAACTATACCTTTAAGTTTTGGACAACTTTCAAACTTAGTTGAGTTCAGAAATTACCAAAATTCATGGAAGAATATAACCATAACAGAGACACACTTAGTAAATTTGACAAAGTTGGAGATGTTCACCTTCAAGACAAAAAATAAACAAGGATTTGTTTTCAATATCTCATGCGATTGGATTCCTCCATTCAAACTGAAGGTTCTTTATTTGGAAAATTGTCTCATTGGTCCACAGTTTCCAATTTGGCTTCAAACTCAAACTCAACTTGTTGACATCACTCTCACCGATGTTGGGATCTCTGGCTCTATACCATACGAGTGGATTTCTAGCATATCTTCTCAAGTCACTACATTGGATTTGTCCAACAACTTGCTCAATATGAGCTTGTCCCACTTATTCATCATACCTGATCATACTAATTTTGTTGGTGAAAGTCAAAAACTTCTCAATGACTCAACTCCCCTCCTTTATCCAAATCTAATACACTTGAATCTACGAAACAATAAACTGTGGGGCCCTATGCCCTTAACTATCAATGATTCGATGCCCAACTTGTTTGAATTAGATTTGTCAAAGAATTACCTTATTAATGGTACAATTCCATCATCCATTAAAACAATGAATCACATTGGTATATTGTTAATGTCAGACAACCAACTTTCAGGGGAGATTTTTGATGATTGGAGTAGACTCAAATTAGTGCTTCGTGTTGATTTAGCCAACAATAATCTACACGGAAACATTCCAACCACAATAGGTCTGTCAACATCGCTCAATGTATTAAAGTTAGAGAACAACAATTTGCATGGAGAAATTCCAGAATCCTTGCAGAATTGTTCACTACTCAAGAGCATCGATCTTTCAGGAAATGGATTCTTAAACGGAAACCTGCCTTCATGGATAGGAGTAGCTGTGTCAAAAATACGATTGTTGAACTTGCGGTCTAATAATTTCAGCGGAACCATTCCAAGACAATGGTGCAATCTTCATTTTCTTCGTATATTAGATCTATCAAACAATCGTCTTTTTGGTGAACTTCCAAGTTGTTTGTATAATTGGTCAGCTTTTGTCCATGGCGATGATGATGACAATGTTGGATTAGGATTGAATTATTATAGCAAAGCAGCGATCAGTTACTCATATGAAGAAAATACAAGGTTGGTTACCAAAGGAAGAGAGTTTGAATACTACAACACTATTGTTAAGTTTGTTCTGACGATAGATCTTTCAAGGAATAAATTGAGTGGTGAAATTCCAAAGGAGATAACAAAGCTCATTCAATTGGTTACTCTAAACTTATCTTGGAATGCTCTGGTGGGTACCATTCCAGAAAATATTGGGGCGATGAAGACTTTAGAAACACTAGATCTCTCCCTCAACTATCTTTCTGGAAGGATTCCCGACAGCCTAGCATCTTTAAATTTCTTGACACATTTGAATATGTCATTCAACAATTTGACAGGAAGAATACCGATGGGTAATCAGCTTCAAACACTGGAAGACCCCTCGATCTATGAAGGTAATCCTTATCTATGTGGGCCTCCTCTAAGTCGGATCAAGTGTCCAGGTGATGAAAGTTCAAGCAATGTACCAATTTCCACAAGCGAAGAAGAAGACGACAAAGCTGAAAATGACTCGGAAATGGTTGGCTTCTATATCAGTATGGCAATTGGTTTTCCATTCGGCATCAACATACTGTTCTTTACCATTTCCACAAATGAAGCAAGGAGATTATTTTACTTTCGAGTTGTGGATCGTGTCAATTATAACATACTCCAAACAATTGCCTTTCTTACAATTGGTCTGAGGAGAATGATTATATGGAGACGATGAAGCTACTAACCAAAACTGTAATTTCTTGGTGGGGCAGCAAATGGATCAAATTTATTTTTAAGATTGAAAATTTTAAGAAATGTGTTGCTTTTTTTTTTTTTACATCAAATTTAGTTTTTATGCATGTATGTCATTATGGCTGTGGATTTTGATAATTGA

mRNA sequence

ATGGCCGATAAGCATTTCATAAATTGTTATGTCTCATTAGTATGGCTGCTTTTTGTAATATTGCCCTCAACTACTACTGTTGGAAGAATACCGATGGGTAATCAGCTTCAAACACTGGAAGACCCCTCGATCTATGAAGGTAATCCTTATCTATGTGGGCCTCCTCTAAGTCGGATCAAGTGTCCAGGTGATGAAAGTTCAAGCAATGTACCAATTTCCACAAGCGAAGAAGAAGACGACAAAGCTGAAAATGACTCGGAAATGTTTTTATGCATGTATGTCATTATGGCTGTGGATTTTGATAATTGA

Coding sequence (CDS)

ATGGCCGATAAGCATTTCATAAATTGTTATGTCTCATTAGTATGGCTGCTTTTTGTAATATTGCCCTCAACTACTACTGTTGGAAGAATACCGATGGGTAATCAGCTTCAAACACTGGAAGACCCCTCGATCTATGAAGGTAATCCTTATCTATGTGGGCCTCCTCTAAGTCGGATCAAGTGTCCAGGTGATGAAAGTTCAAGCAATGTACCAATTTCCACAAGCGAAGAAGAAGACGACAAAGCTGAAAATGACTCGGAAATGTTTTTATGCATGTATGTCATTATGGCTGTGGATTTTGATAATTGA

Protein sequence

MADKHFINCYVSLVWLLFVILPSTTTVGRIPMGNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEEEDDKAENDSEMFLCMYVIMAVDFDN

Homology

[Close]

BLAST of CsGy1G010000 vs. NCBI nr
Match: XP_011652343.1 (PREDICTED: receptor-like protein 12 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 6.5e-25
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 33  GNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEEEDDKAENDSEMFLCM 92
           GNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEEEDDKAENDSEM +  
Sbjct: 931 GNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEEEDDKAENDSEM-VGF 990

Query: 93  YVIMAVDF 101
           Y+ MA+ F
Sbjct: 991 YISMAIGF 997

[Close]

BLAST of CsGy1G010000 vs. NCBI nr
Match: XP_011660362.1 (PREDICTED: receptor-like protein 12 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.8e-19
Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 35  QLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSE-EEDDKAENDSEMFLCMY 94
           QLQTLEDPSIYEGNPYLCGPPL ++KCPGDESSSNVPISTSE EED KAENDSEM    Y
Sbjct: 928 QLQTLEDPSIYEGNPYLCGPPLIQMKCPGDESSSNVPISTSEVEEDGKAENDSEM-AGFY 987

Query: 95  VIMAVDF 101
           + MA+ F
Sbjct: 988 ISMAIGF 993

[Close]

BLAST of CsGy1G010000 vs. NCBI nr
Match: KGN64449.1 (hypothetical protein Csa_1G051860 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 9.0e-19
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 33  GNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEEEDDKAENDSEMFLCM 92
           GNQLQTLEDP IYEGN YLCGPPL RIKCPGDESSSN+PISTSE E+D  ENDS M +  
Sbjct: 923 GNQLQTLEDPWIYEGNHYLCGPPLIRIKCPGDESSSNLPISTSEGEEDGKENDSAM-VGF 982

Query: 93  YVIMAVDF 101
           Y+ MAV F
Sbjct: 983 YISMAVGF 989

[Close]

BLAST of CsGy1G010000 vs. NCBI nr
Match: XP_011652339.1 (PREDICTED: LOW QUALITY PROTEIN: LRR receptor-like serine/threonine-protein kinase FLS2 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 9.0e-19
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 33   GNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEEEDDKAENDSEMFLCM 92
            GNQLQTLEDP IYEGN YLCGPPL RIKCPGDESSSN+PISTSE E+D  ENDS M +  
Sbjct: 946  GNQLQTLEDPWIYEGNHYLCGPPLIRIKCPGDESSSNLPISTSEGEEDGKENDSAM-VGF 1005

Query: 93   YVIMAVDF 101
            Y+ MAV F
Sbjct: 1006 YISMAVGF 1012

[Close]

BLAST of CsGy1G010000 vs. NCBI nr
Match: XP_016899498.1 (PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 5.8e-18
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 33  GNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEEEDDKAENDSEMFLCM 92
           GNQ+QTLEDPSIYEGNP LCGPPL +IKCPGDE+S+N PIST +EED K ENDSEM L  
Sbjct: 259 GNQIQTLEDPSIYEGNPSLCGPPL-KIKCPGDENSNNTPISTRDEEDGK-ENDSEMLLGF 318

Query: 93  YVIMAVDF 101
           Y+ +A+ F
Sbjct: 319 YISVAIGF 324

[Close]

BLAST of CsGy1G010000 vs. TrEMBL
Match: tr|A0A0A0LTZ3|A0A0A0LTZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051860 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.0e-19
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 33  GNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEEEDDKAENDSEMFLCM 92
           GNQLQTLEDP IYEGN YLCGPPL RIKCPGDESSSN+PISTSE E+D  ENDS M +  
Sbjct: 923 GNQLQTLEDPWIYEGNHYLCGPPLIRIKCPGDESSSNLPISTSEGEEDGKENDSAM-VGF 982

Query: 93  YVIMAVDF 101
           Y+ MAV F
Sbjct: 983 YISMAVGF 989

[Close]

BLAST of CsGy1G010000 vs. TrEMBL
Match: tr|A0A1S4DU56|A0A1S4DU56_CUCME (serine/threonine-protein kinase BRI1-like 2 OS=Cucumis melo OX=3656 GN=LOC107990556 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.9e-18
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 33  GNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEEEDDKAENDSEMFLCM 92
           GNQ+QTLEDPSIYEGNP LCGPPL +IKCPGDE+S+N PIST +EED K ENDSEM L  
Sbjct: 259 GNQIQTLEDPSIYEGNPSLCGPPL-KIKCPGDENSNNTPISTRDEEDGK-ENDSEMLLGF 318

Query: 93  YVIMAVDF 101
           Y+ +A+ F
Sbjct: 319 YISVAIGF 324

[Close]

BLAST of CsGy1G010000 vs. TrEMBL
Match: tr|A0A1S3B080|A0A1S3B080_CUCME (leucine-rich repeat receptor protein kinase EMS1-like OS=Cucumis melo OX=3656 GN=LOC103484744 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.2e-16
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 33  GNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEEEDDKAENDSEMFLCM 92
           GNQLQTLEDPSIYEGNP+LCGPPL +I CP DESS+N+P STSEEE    EN SEM +  
Sbjct: 915 GNQLQTLEDPSIYEGNPHLCGPPLIQINCPSDESSTNLPTSTSEEE----ENGSEM-VGF 974

Query: 93  YVIMAVDF 101
           Y+ MA+ F
Sbjct: 975 YISMAIGF 977

[Close]

BLAST of CsGy1G010000 vs. TrEMBL
Match: tr|A0A1S3B090|A0A1S3B090_CUCME (probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Cucumis melo OX=3656 GN=LOC103484754 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-15
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 33  GNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEEE-DDKAENDSEMFLC 92
           GNQLQTLEDPSIYEGNP LCGPPL +IKC GDESS+NV +STSEEE +D  END EM + 
Sbjct: 911 GNQLQTLEDPSIYEGNPSLCGPPL-QIKCAGDESSNNVLVSTSEEEKEDGNENDLEM-VG 970

Query: 93  MYVIMAVDF 101
            Y+ MA+ F
Sbjct: 971 FYISMAIGF 977

[Close]

BLAST of CsGy1G010000 vs. TrEMBL
Match: tr|M5WQI4|M5WQI4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa024905mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.2e-08
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 28  GRIPMGNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEEEDDKAENDSE 87
           GRIP+GNQLQTL D SIYEGN  LCG PLS  KCPGDE+ +    +T+ ++ +   ND  
Sbjct: 861 GRIPLGNQLQTLNDSSIYEGNKLLCGEPLS-TKCPGDETLT----ATNAKDSNADANDK- 920

Query: 88  MFLCMYVIMAVDF 101
             L  YV M + F
Sbjct: 921 --LWFYVSMVLGF 925

The following BLAST results are available for this feature:

BLAST of CsGy1G010000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652343.1	6.5e-25	88.24	PREDICTED: receptor-like protein 12 [Cucumis sativus]	[more]
XP_011660362.1	1.8e-19	80.60	PREDICTED: receptor-like protein 12 [Cucumis sativus]	[more]
KGN64449.1	9.0e-19	76.47	hypothetical protein Csa_1G051860 [Cucumis sativus]	[more]
XP_011652339.1	9.0e-19	76.47	PREDICTED: LOW QUALITY PROTEIN: LRR receptor-like serine/threonine-protein kinas...	[more]
XP_016899498.1	5.8e-18	72.06	PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Cucumis melo]	[more]

BLAST of CsGy1G010000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G010000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G010000 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTZ3\|A0A0A0LTZ3_CUCSA	6.0e-19	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051860 PE=4 SV=1	[more]
tr\|A0A1S4DU56\|A0A1S4DU56_CUCME	3.9e-18	72.06	serine/threonine-protein kinase BRI1-like 2 OS=Cucumis melo OX=3656 GN=LOC107990...	[more]
tr\|A0A1S3B080\|A0A1S3B080_CUCME	6.2e-16	69.12	leucine-rich repeat receptor protein kinase EMS1-like OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A1S3B090\|A0A1S3B090_CUCME	3.1e-15	71.01	probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Cucumis ...	[more]
tr\|M5WQI4\|M5WQI4_PRUPE	6.2e-08	52.05	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa024905mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G010000.1	CsGy1G010000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 9..70 e-value: 4.5E-9 score: 36.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..83
None	No IPR available	PANTHER	PTHR27004	FAMILY NOT NAMED	coord: 27..96

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G010000	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G010000	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G010000	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G010000	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G010000	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G010000	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G010000	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G010000	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G010000	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G010000	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G010000	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G010000	Watermelon (97103) v1	cgybwmB010
CsGy1G010000	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G010000	Silver-seed gourd	carcgybB0500
CsGy1G010000	Silver-seed gourd	carcgybB0989
CsGy1G010000	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G010000	Watermelon (97103) v2	cgybwmbB032