CsGy1G009990 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G009990
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionserine/threonine-protein kinase BRI1-like 2
LocationChr1 : 6201267 .. 6201990 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCATAGCAATGACTAGTTTGGGATATTATGGTGATAATAAGGGAACAAAGTTGGTTATGAAAGGTAAAGAGTCTGAATACTACTATAATATTCTCAAGCTTGTTCTGACAATAGATCTTTCAAGGAATAAATTGAGTGGTGAAATTCCAAATGAGATAAACAAAGCTCATTCACTTGGTTACTCTAAACTTGTCTTGGAATGCTCTCTTGTGTACCATTCCAGAAAATATTGGAGCCATAAAGAATTTACAAACATTGGATCTCTCCCACAACCATCTTATTGGAAGGATCCCTGTCAGCTTAGCATCTCTAACTTTGTTGATACATTTGAGTATGTCATTCAACAATTTGACAGGAAGAATACCGACGGGTAATCAGCTTCAAACACTGGAACACCTTCCGATCTATGAAGGCAATCCTTATTTATGTGGGCCTCCTCTTCAAATCAAGTGTCCAGGTGATGAAAGTTCAAGCAATGTACCAATTTCAACAAGAGAAGAAGAAAAAGAAGATGGTGAAGCTGAAAATGACTCGGAAATGGTTAGGATGGCAATTGGTTTTCCGGTTGGTATCAACATACTGTTCTTTACCATTTTCACAAACCAAGCAAGGAGAGTATTCTACTTTCGTTTCGTGGATCGTGTCAATTACAACATACTTCAAACAACTGATCACTTTCTTACGTTTGGTGTGAGGAGAATGATGATATGGAGATGA

mRNA sequence

ATGGCAACCATAGCAATGACTAGTTTGGGATATTATGGTGATAATAAGGGAACAAAGTTGGTTATGAAAGAAAATATTGGAGCCATAAAGAATTTACAAACATTGGATCTCTCCCACAACCATCTTATTGGAAGGATCCCTGTCAGCTTAGCATCTCTAACTTTGTTGATACATTTGAGTATGTCATTCAACAATTTGACAGGAAGAATACCGACGGGTAATCAGCTTCAAACACTGGAACACCTTCCGATCTATGAAGGCAATCCTTATTTATGTGGGCCTCCTCTTCAAATCAAGTGTCCAGGTGATGAAAGTTCAAGCAATGTACCAATTTCAACAAGAGAAGAAGAAAAAGAAGATGGTGAAGCTGAAAATGACTCGGAAATGGTTAGGATGGCAATTGGTTTTCCGGTTGGTATCAACATACTGTTCTTTACCATTTTCACAAACCAAGCAAGGAGAGTATTCTACTTTCGTTTCGTGGATCGTGTCAATTACAACATACTTCAAACAACTGATCACTTTCTTACGTTTGGTGTGAGGAGAATGATGATATGGAGATGA

Coding sequence (CDS)

ATGGCAACCATAGCAATGACTAGTTTGGGATATTATGGTGATAATAAGGGAACAAAGTTGGTTATGAAAGAAAATATTGGAGCCATAAAGAATTTACAAACATTGGATCTCTCCCACAACCATCTTATTGGAAGGATCCCTGTCAGCTTAGCATCTCTAACTTTGTTGATACATTTGAGTATGTCATTCAACAATTTGACAGGAAGAATACCGACGGGTAATCAGCTTCAAACACTGGAACACCTTCCGATCTATGAAGGCAATCCTTATTTATGTGGGCCTCCTCTTCAAATCAAGTGTCCAGGTGATGAAAGTTCAAGCAATGTACCAATTTCAACAAGAGAAGAAGAAAAAGAAGATGGTGAAGCTGAAAATGACTCGGAAATGGTTAGGATGGCAATTGGTTTTCCGGTTGGTATCAACATACTGTTCTTTACCATTTTCACAAACCAAGCAAGGAGAGTATTCTACTTTCGTTTCGTGGATCGTGTCAATTACAACATACTTCAAACAACTGATCACTTTCTTACGTTTGGTGTGAGGAGAATGATGATATGGAGATGA

Protein sequence

MATIAMTSLGYYGDNKGTKLVMKENIGAIKNLQTLDLSHNHLIGRIPVSLASLTLLIHLSMSFNNLTGRIPTGNQLQTLEHLPIYEGNPYLCGPPLQIKCPGDESSSNVPISTREEEKEDGEAENDSEMVRMAIGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRMMIWR
Homology
[Close]
BLAST of CsGy1G009990 vs. NCBI nr
Match: XP_011660362.1 (PREDICTED: receptor-like protein 12 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 1.6e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 74   NQLQTLEHLPIYEGNPYLCGPPLQIKCPGDESSSNVPISTREEEKEDGEAENDSEMVRMA 133
            NQLQTLEHLPIYEGNPYLCGPPLQIKCPGDESSSNVPISTREEEKEDGEAENDSEMVRMA
Sbjct: 1077 NQLQTLEHLPIYEGNPYLCGPPLQIKCPGDESSSNVPISTREEEKEDGEAENDSEMVRMA 1136

Query: 134  IGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRMMIWR 188
            IGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRMMIWR
Sbjct: 1137 IGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRMMIWR 1190

[Close]
BLAST of CsGy1G009990 vs. NCBI nr
Match: XP_008440243.1 (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 9.3e-38
Identity = 91/119 (76.47%), Postives = 95/119 (79.83%), Query Frame = 0 

Query: 73   GNQLQTLEHLPIYEGNPYLCGPPLQIKCPGDESSSNVPISTREEEKEDGEAENDSEMV-- 132
            GNQLQTLE   IYEGNP LCGPPLQIKC GDESS+NV +ST EEEKEDG  END EMV  
Sbjct: 911  GNQLQTLEDPSIYEGNPSLCGPPLQIKCAGDESSNNVLVSTSEEEKEDGN-ENDLEMVGF 970

Query: 133  --RMAIGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRMMIWR 188
               MAIGFPVGINILFFTIFTN+ARR+FYF FVD VNY ILQ  D FL  GVRRMM WR
Sbjct: 971  YISMAIGFPVGINILFFTIFTNEARRIFYFGFVDDVNYKILQIID-FLIVGVRRMMRWR 1027

[Close]
BLAST of CsGy1G009990 vs. NCBI nr
Match: XP_016899498.1 (PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 9.3e-38
Identity = 86/120 (71.67%), Postives = 101/120 (84.17%), Query Frame = 0 

Query: 73  GNQLQTLEHLPIYEGNPYLCGPPLQIKCPGDESSSNVPISTREEEKEDGEAENDSEM--- 132
           GNQ+QTLE   IYEGNP LCGPPL+IKCPGDE+S+N PISTR+E  EDG+ ENDSEM   
Sbjct: 259 GNQIQTLEDPSIYEGNPSLCGPPLKIKCPGDENSNNTPISTRDE--EDGK-ENDSEMLLG 318

Query: 133 --VRMAIGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRMMIWR 188
             + +AIGFPVG+NILFF IFTN+ARR+FYFRF+DRVNYNILQT D  LT G+RRM++WR
Sbjct: 319 FYISVAIGFPVGLNILFFIIFTNEARRIFYFRFIDRVNYNILQTIDS-LTRGLRRMIMWR 374

[Close]
BLAST of CsGy1G009990 vs. NCBI nr
Match: XP_011652343.1 (PREDICTED: receptor-like protein 12 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 2.1e-37
Identity = 92/120 (76.67%), Postives = 98/120 (81.67%), Query Frame = 0 

Query: 73   GNQLQTLEHLPIYEGNPYLCGPPL-QIKCPGDESSSNVPISTREEEKEDGEAENDSEMV- 132
            GNQLQTLE   IYEGNPYLCGPPL +IKCPGDESSSNVPIST EE  ED +AENDSEMV 
Sbjct: 931  GNQLQTLEDPSIYEGNPYLCGPPLSRIKCPGDESSSNVPISTSEE--EDDKAENDSEMVG 990

Query: 133  ---RMAIGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRMMIWR 188
                MAIGFP GINILFFTI TN+ARR+FYFR VDRVN NILQT   FL  G+RRM+IWR
Sbjct: 991  FYISMAIGFPFGINILFFTISTNEARRLFYFRVVDRVNCNILQTI-AFLAIGLRRMIIWR 1047

[Close]
BLAST of CsGy1G009990 vs. NCBI nr
Match: XP_008440232.2 (PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 2.8e-34
Identity = 86/120 (71.67%), Postives = 92/120 (76.67%), Query Frame = 0 

Query: 73   GNQLQTLEHLPIYEGNPYLCGPPL-QIKCPGDESSSNVPISTREEEKEDGEAENDSEMV- 132
            GNQLQTLE   IYEGNP+LCGPPL QI CP DESS+N+P ST EEE      EN SEMV 
Sbjct: 915  GNQLQTLEDPSIYEGNPHLCGPPLIQINCPSDESSTNLPTSTSEEE------ENGSEMVG 974

Query: 133  ---RMAIGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRMMIWR 188
                MAIGFP GINILFFTIFTNQARR+FY R VDRVNYNILQT   FL  G+RRM+IWR
Sbjct: 975  FYISMAIGFPFGINILFFTIFTNQARRIFYLRIVDRVNYNILQTI-VFLIIGLRRMIIWR 1027

[Close]
BLAST of CsGy1G009990 vs. TrEMBL
Match: tr|A0A1S4DU56|A0A1S4DU56_CUCME (serine/threonine-protein kinase BRI1-like 2 OS=Cucumis melo OX=3656 GN=LOC107990556 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.2e-38
Identity = 86/120 (71.67%), Postives = 101/120 (84.17%), Query Frame = 0 

Query: 73  GNQLQTLEHLPIYEGNPYLCGPPLQIKCPGDESSSNVPISTREEEKEDGEAENDSEM--- 132
           GNQ+QTLE   IYEGNP LCGPPL+IKCPGDE+S+N PISTR+E  EDG+ ENDSEM   
Sbjct: 259 GNQIQTLEDPSIYEGNPSLCGPPLKIKCPGDENSNNTPISTRDE--EDGK-ENDSEMLLG 318

Query: 133 --VRMAIGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRMMIWR 188
             + +AIGFPVG+NILFF IFTN+ARR+FYFRF+DRVNYNILQT D  LT G+RRM++WR
Sbjct: 319 FYISVAIGFPVGLNILFFIIFTNEARRIFYFRFIDRVNYNILQTIDS-LTRGLRRMIMWR 374

[Close]
BLAST of CsGy1G009990 vs. TrEMBL
Match: tr|A0A1S3B090|A0A1S3B090_CUCME (probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Cucumis melo OX=3656 GN=LOC103484754 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.2e-38
Identity = 91/119 (76.47%), Postives = 95/119 (79.83%), Query Frame = 0 

Query: 73   GNQLQTLEHLPIYEGNPYLCGPPLQIKCPGDESSSNVPISTREEEKEDGEAENDSEMV-- 132
            GNQLQTLE   IYEGNP LCGPPLQIKC GDESS+NV +ST EEEKEDG  END EMV  
Sbjct: 911  GNQLQTLEDPSIYEGNPSLCGPPLQIKCAGDESSNNVLVSTSEEEKEDGN-ENDLEMVGF 970

Query: 133  --RMAIGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRMMIWR 188
               MAIGFPVGINILFFTIFTN+ARR+FYF FVD VNY ILQ  D FL  GVRRMM WR
Sbjct: 971  YISMAIGFPVGINILFFTIFTNEARRIFYFGFVDDVNYKILQIID-FLIVGVRRMMRWR 1027

[Close]
BLAST of CsGy1G009990 vs. TrEMBL
Match: tr|A0A1S3B080|A0A1S3B080_CUCME (leucine-rich repeat receptor protein kinase EMS1-like OS=Cucumis melo OX=3656 GN=LOC103484744 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 86/120 (71.67%), Postives = 92/120 (76.67%), Query Frame = 0 

Query: 73   GNQLQTLEHLPIYEGNPYLCGPPL-QIKCPGDESSSNVPISTREEEKEDGEAENDSEMV- 132
            GNQLQTLE   IYEGNP+LCGPPL QI CP DESS+N+P ST EEE      EN SEMV 
Sbjct: 915  GNQLQTLEDPSIYEGNPHLCGPPLIQINCPSDESSTNLPTSTSEEE------ENGSEMVG 974

Query: 133  ---RMAIGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRMMIWR 188
                MAIGFP GINILFFTIFTNQARR+FY R VDRVNYNILQT   FL  G+RRM+IWR
Sbjct: 975  FYISMAIGFPFGINILFFTIFTNQARRIFYLRIVDRVNYNILQTI-VFLIIGLRRMIIWR 1027

[Close]
BLAST of CsGy1G009990 vs. TrEMBL
Match: tr|A0A0A0LTZ3|A0A0A0LTZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051860 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-33
Identity = 87/120 (72.50%), Postives = 96/120 (80.00%), Query Frame = 0 

Query: 73   GNQLQTLEHLPIYEGNPYLCGPPL-QIKCPGDESSSNVPISTREEEKEDGEAENDSEMV- 132
            GNQLQTLE   IYEGN YLCGPPL +IKCPGDESSSN+PIST E E EDG+ ENDS MV 
Sbjct: 923  GNQLQTLEDPWIYEGNHYLCGPPLIRIKCPGDESSSNLPISTSEGE-EDGK-ENDSAMVG 982

Query: 133  ---RMAIGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRMMIWR 188
                MA+GFP GI+IL FTI TN+ARR+FYF  VDRVNYNILQT   FLT G+RRM+IWR
Sbjct: 983  FYISMAVGFPFGISILLFTICTNEARRIFYFGIVDRVNYNILQTI-AFLTIGLRRMIIWR 1039

[Close]
BLAST of CsGy1G009990 vs. TrEMBL
Match: tr|A0A1S4DVK2|A0A1S4DVK2_CUCME (LOW QUALITY PROTEIN: LRR receptor-like serine/threonine-protein kinase FLS2 OS=Cucumis melo OX=3656 GN=LOC103486804 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 0 

Query: 75  QLQTLEHLPIYEGNPYLCGPPLQIKCPGDESSSN-VPISTREEEKEDGEAE--NDSEMVR 134
           QLQTL    IY+GNP+L       K PGD+ ++N VP+S  + + ++ E E         
Sbjct: 864 QLQTLNDPSIYDGNPFL------TKSPGDKKTNNDVPVSANKVDGKENEMEFFGFGFYTS 923

Query: 135 MAIGFPVGINILFFTIFTNQARRVFYFRFVDRVNYNILQTTDHFLTFGVRRM 184
           MAIGFP+G+NILFFTIFT+++RR+ Y +F+DRVNYNIL+     +T  +RR+
Sbjct: 924 MAIGFPIGLNILFFTIFTSRSRRILYIQFIDRVNYNILEGIGFVIT-SMRRL 968

The following BLAST results are available for this feature:
BLAST of CsGy1G009990 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011660362.11.6e-58100.00PREDICTED: receptor-like protein 12 [Cucumis sativus][more]
XP_008440243.19.3e-3876.47PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 ... [more]
XP_016899498.19.3e-3871.67PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Cucumis melo][more]
XP_011652343.12.1e-3776.67PREDICTED: receptor-like protein 12 [Cucumis sativus][more]
XP_008440232.22.8e-3471.67PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Cucumis melo][more]
BLAST of CsGy1G009990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G009990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G009990 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DU56|A0A1S4DU56_CUCME6.2e-3871.67serine/threonine-protein kinase BRI1-like 2 OS=Cucumis melo OX=3656 GN=LOC107990... [more]
tr|A0A1S3B090|A0A1S3B090_CUCME6.2e-3876.47probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Cucumis ... [more]
tr|A0A1S3B080|A0A1S3B080_CUCME1.9e-3471.67leucine-rich repeat receptor protein kinase EMS1-like OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0LTZ3|A0A0A0LTZ3_CUCSA1.2e-3372.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051860 PE=4 SV=1[more]
tr|A0A1S4DVK2|A0A1S4DVK2_CUCME1.5e-1546.43LOW QUALITY PROTEIN: LRR receptor-like serine/threonine-protein kinase FLS2 OS=C... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016301 kinase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G009990.1CsGy1G009990.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 31..53
e-value: 0.0084
score: 16.4
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 31..54
score: 7.72
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 55..77
score: 5.171
IPR032675Leucine-rich repeat domain superfamilyGENE3DG3DSA:3.80.10.10coord: 15..109
e-value: 5.3E-27
score: 96.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..125
NoneNo IPR availablePANTHERPTHR27004FAMILY NOT NAMEDcoord: 23..167
NoneNo IPR availablePANTHERPTHR27004:SF56SUBFAMILY NOT NAMEDcoord: 23..167
NoneNo IPR availableSUPERFAMILYSSF52058L domain-likecoord: 24..97

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G009990CSPI01G09950Wild cucumber (PI 183967)cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G009990Cucurbita maxima (Rimu)cgybcmaB063
CsGy1G009990Cucurbita maxima (Rimu)cgybcmaB093
CsGy1G009990Cucurbita moschata (Rifu)cgybcmoB058
CsGy1G009990Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G009990Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G009990Cucurbita pepo (Zucchini)cgybcpeB080
CsGy1G009990Cucumber (Chinese Long) v2cgybcuB001
CsGy1G009990Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G009990Melon (DHL92) v3.5.1cgybmeB022
CsGy1G009990Melon (DHL92) v3.6.1cgybmedB020
CsGy1G009990Watermelon (Charleston Gray)cgybwcgB033
CsGy1G009990Watermelon (97103) v1cgybwmB010
CsGy1G009990Silver-seed gourdcarcgybB0500
CsGy1G009990Silver-seed gourdcarcgybB0989
CsGy1G009990Cucumber (Chinese Long) v3cgybcucB002
CsGy1G009990Watermelon (97103) v2cgybwmbB032