CsGy1G009600 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G009600
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	TITAN-like protein isoform X3
Location	Chr1 : 5972232 .. 5973014 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTGGTAAGGTCCGGGTAGTTTCCCGAACTACCAAAACTTTTGTGGTTCATCTCCATCCAAGAATTCCAAGAAGCCTTGGATGGTATTGAACCTGAGATTTTTAGTTCTTAATGAGTAAAGTATGCGGTACAATTTTCACAAAGACCCTTTGACTGTAGTTAGTAAGGCCATTGTTCTTTAGTGACAGTGTAATATACCTGTAAACTTTTTTCAAGAGTATAGTTAGAGAGCTTCAGGATTTTGTGTATCTTGCTTGGGGTTTTTCAAAATGACATTTTGGAATTGATCTCCGTTTAGAATTAACATGTAATGGGGATGATTTTTTAAGTTCTGTTGGCTGACTTCTAGACTTGGTGGGTGCATTGATCATTGATCATTGCTTTCTTTTCCTTCTTCACTGCAGTATAGTTATTCTTCATGTATATATATATATTTCTATTTCTAATATGAAGAAATGTATGCACTTCATCCTTCATGTTTTTTCTTTCATTATCTCATGCTTTAAGATTTTGTAACAGTAGTAATGCAATTAAACACCTGGCCAGTGCGGATCATCTGAAAAATTTGAAGCATTTCTTCTGGAAGTATGGTGGTGATGTGGAACGTCTGGATAGTTATAGAATTTTGGATGCTGATGTAGCTAAGGTAACCATGAGCCTTTACTTTTTATAAGGTTCAATTTATTTGAACTGTATTATCCAGGTGTGTCATGCAAACAATATTTGGTTCTCTTATATTGACTTGAATCAACAAAGAGAAACAAACATAGCAATATAG

mRNA sequence

ATGAGATTGGTAAGGTCCGGTAGTAATGCAATTAAACACCTGGCCAGTGCGGATCATCTGAAAAATTTGAAGCATTTCTTCTGGAAGTATGGTGGTGATGTGGAACGTCTGGATAGTTATAGAATTTTGGATGCTGATGTAGCTAAGGTGTGTCATGCAAACAATATTTGGTTCTCTTATATTGACTTGAATCAACAAAGAGAAACAAACATAGCAATATAG

Coding sequence (CDS)

ATGAGATTGGTAAGGTCCGGTAGTAATGCAATTAAACACCTGGCCAGTGCGGATCATCTGAAAAATTTGAAGCATTTCTTCTGGAAGTATGGTGGTGATGTGGAACGTCTGGATAGTTATAGAATTTTGGATGCTGATGTAGCTAAGGTGTGTCATGCAAACAATATTTGGTTCTCTTATATTGACTTGAATCAACAAAGAGAAACAAACATAGCAATATAG

Protein sequence

MRLVRSGSNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAKVCHANNIWFSYIDLNQQRETNIAI

Homology

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BLAST of CsGy1G009600 vs. NCBI nr
Match: XP_011652145.1 (PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >XP_011652149.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >XP_011652153.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >XP_011652157.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >XP_011652160.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >XP_011652164.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >KGN64412.1 hypothetical protein Csa_1G050510 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 8.7e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 8   SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 50
           SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK
Sbjct: 93  SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 134

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BLAST of CsGy1G009600 vs. NCBI nr
Match: XP_011652172.1 (PREDICTED: TITAN-like protein isoform X3 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 8.7e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 8   SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 50
           SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK
Sbjct: 93  SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 134

[Close]

BLAST of CsGy1G009600 vs. NCBI nr
Match: XP_008439729.1 (PREDICTED: TITAN-like protein isoform X1 [Cucumis melo] >XP_008439739.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis melo] >XP_008439747.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis melo] >XP_008439753.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.5e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 8   SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 50
           SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRIL+ADVAK
Sbjct: 90  SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILEADVAK 131

[Close]

BLAST of CsGy1G009600 vs. NCBI nr
Match: XP_016899694.1 (PREDICTED: TITAN-like protein isoform X3 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.5e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 8   SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 50
           SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRIL+ADVAK
Sbjct: 90  SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILEADVAK 131

[Close]

BLAST of CsGy1G009600 vs. NCBI nr
Match: XP_011652166.1 (PREDICTED: TITAN-like protein isoform X2 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 3.3e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 9   NAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 50
           NAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK
Sbjct: 93  NAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 133

[Close]

BLAST of CsGy1G009600 vs. TAIR10
Match: AT4G24900.1 (unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 4.0e-07
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 8   SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 50
           S AI H AS+DHLKN+K F  K G  ++ +D +RI +ADVAK
Sbjct: 89  SKAINHFASSDHLKNIKQFLSKNGPAMDCIDEFRISEADVAK 130

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BLAST of CsGy1G009600 vs. Swiss-Prot
Match: sp|F4JRR5|TTL_ARATH (TITAN-like protein OS=Arabidopsis thaliana OX=3702 GN=TTL PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.3e-06
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 8   SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 50
           S AI H AS+DHLKN+K F  K G  ++ +D +RI +ADVAK
Sbjct: 89  SKAINHFASSDHLKNIKQFLSKNGPAMDCIDEFRISEADVAK 130

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BLAST of CsGy1G009600 vs. TrEMBL
Match: tr|A0A0A0LUE2|A0A0A0LUE2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050510 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.8e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 8   SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 50
           SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK
Sbjct: 93  SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 134

[Close]

BLAST of CsGy1G009600 vs. TrEMBL
Match: tr|A0A1S3AZI0|A0A1S3AZI0_CUCME (TITAN-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484440 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 8   SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 50
           SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRIL+ADVAK
Sbjct: 90  SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILEADVAK 131

[Close]

BLAST of CsGy1G009600 vs. TrEMBL
Match: tr|A0A1S4DUN7|A0A1S4DUN7_CUCME (TITAN-like protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484440 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 8   SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 50
           SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRIL+ADVAK
Sbjct: 90  SNAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILEADVAK 131

[Close]

BLAST of CsGy1G009600 vs. TrEMBL
Match: tr|A0A1S3AZM1|A0A1S3AZM1_CUCME (TITAN-like protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484440 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.4e-15
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 9   NAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 50
           NAIKHLASADHLKNLKHFFWKYGGDVERLDSYRIL+ADVAK
Sbjct: 90  NAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILEADVAK 130

[Close]

BLAST of CsGy1G009600 vs. TrEMBL
Match: tr|A0A2I4F516|A0A2I4F516_9ROSI (TITAN-like protein isoform X1 OS=Juglans regia OX=51240 GN=LOC108995580 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 9   NAIKHLASADHLKNLKHFFWKYGGDVERLDSYRILDADVAK 50
           NAI HLASADHLKNLKHF WKYGG V+RLD++RIL+ADVAK
Sbjct: 118 NAINHLASADHLKNLKHFLWKYGGAVDRLDTFRILEADVAK 158

The following BLAST results are available for this feature:

BLAST of CsGy1G009600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652145.1	8.7e-16	100.00	PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >XP_011652149.1 PREDI...	[more]
XP_011652172.1	8.7e-16	100.00	PREDICTED: TITAN-like protein isoform X3 [Cucumis sativus]	[more]
XP_008439729.1	2.5e-15	97.62	PREDICTED: TITAN-like protein isoform X1 [Cucumis melo] >XP_008439739.1 PREDICTE...	[more]
XP_016899694.1	2.5e-15	97.62	PREDICTED: TITAN-like protein isoform X3 [Cucumis melo]	[more]
XP_011652166.1	3.3e-15	100.00	PREDICTED: TITAN-like protein isoform X2 [Cucumis sativus]	[more]

BLAST of CsGy1G009600 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24900.1	4.0e-07	54.76	unknown protein	[more]

BLAST of CsGy1G009600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4JRR5\|TTL_ARATH	7.3e-06	54.76	TITAN-like protein OS=Arabidopsis thaliana OX=3702 GN=TTL PE=2 SV=1	[more]

BLAST of CsGy1G009600 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUE2\|A0A0A0LUE2_CUCSA	5.8e-16	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050510 PE=4 SV=1	[more]
tr\|A0A1S3AZI0\|A0A1S3AZI0_CUCME	1.7e-15	97.62	TITAN-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484440 PE=4 SV=1	[more]
tr\|A0A1S4DUN7\|A0A1S4DUN7_CUCME	1.7e-15	97.62	TITAN-like protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484440 PE=4 SV=1	[more]
tr\|A0A1S3AZM1\|A0A1S3AZM1_CUCME	6.4e-15	97.56	TITAN-like protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484440 PE=4 SV=1	[more]
tr\|A0A2I4F516\|A0A2I4F516_9ROSI	1.5e-11	82.93	TITAN-like protein isoform X1 OS=Juglans regia OX=51240 GN=LOC108995580 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR028015	CCDC84

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G009600.1	CsGy1G009600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028015	Coiled-coil domain-containing protein 84	PFAM	PF14968	CCDC84	coord: 8..55 e-value: 6.6E-12 score: 45.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G009600	Cla002622	Watermelon (97103) v1	cgybwmB010

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G009600	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G009600	Cucumber (Chinese Long) v3	cgybcucB010
CsGy1G009600	Watermelon (97103) v2	cgybwmbB032
CsGy1G009600	Watermelon (97103) v2	cgybwmbB070
CsGy1G009600	Wax gourd	cgybwgoB029
CsGy1G009600	Cucumber (Gy14) v2	cgybcgybB005
CsGy1G009600	Cucurbita maxima (Rimu)	cgybcmaB025
CsGy1G009600	Cucurbita maxima (Rimu)	cgybcmaB049
CsGy1G009600	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G009600	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G009600	Cucurbita moschata (Rifu)	cgybcmoB026
CsGy1G009600	Cucurbita moschata (Rifu)	cgybcmoB046
CsGy1G009600	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G009600	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G009600	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G009600	Cucurbita pepo (Zucchini)	cgybcpeB049
CsGy1G009600	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G009600	Cucurbita pepo (Zucchini)	cgybcpeB123
CsGy1G009600	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G009600	Cucumber (Chinese Long) v2	cgybcuB014
CsGy1G009600	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G009600	Bottle gourd (USVL1VR-Ls)	cgyblsiB064
CsGy1G009600	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G009600	Melon (DHL92) v3.5.1	cgybmeB046
CsGy1G009600	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G009600	Melon (DHL92) v3.6.1	cgybmedB041
CsGy1G009600	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G009600	Watermelon (Charleston Gray)	cgybwcgB069
CsGy1G009600	Watermelon (97103) v1	cgybwmB087
CsGy1G009600	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G009600	Wild cucumber (PI 183967)	cgybcpiB013
CsGy1G009600	Silver-seed gourd	carcgybB0373
CsGy1G009600	Silver-seed gourd	carcgybB0500
CsGy1G009600	Silver-seed gourd	carcgybB0989