CsGy1G009590 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G009590
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	TITAN-like protein isoform X2
Location	Chr1 : 5971426 .. 5971698 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAAAGGAGCTAAAGAAGAGCGCATACGAGTACTGCCTCGTTTGCAAGCTAAACCATGACCAAGGGCAGCGCCATAAGTATTTTCCCAACCACAAAAAATCGCTTTCTTCTTTTCTATCTCGGTTCGAGATCAAGCTGTCCGACGTTCGCTTTTTTCTCAAGACTCCTTTTCTCCTCTCCCCCGAGTTTGCTTCTCACAATCGGTTCTGGTGTATCTTTTGCGATGTTCAAGTTGATGAGAATGACAGTTCCTTCGCATGGTATTAA

mRNA sequence

ATGAAGAAAAAGGAGCTAAAGAAGAGCGCATACGAGTACTGCCTCGTTTGCAAGCTAAACCATGACCAAGGGCAGCGCCATAAGTATTTTCCCAACCACAAAAAATCGCTTTCTTCTTTTCTATCTCGGTTCGAGATCAAGCTGTCCGACGTTCGCTTTTTTCTCAAGACTCCTTTTCTCCTCTCCCCCGAGTTTGCTTCTCACAATCGGTTCTGGTGTATCTTTTGCGATGTTCAAGTTGATGAGAATGACAGTTCCTTCGCATGGTATTAA

Coding sequence (CDS)

ATGAAGAAAAAGGAGCTAAAGAAGAGCGCATACGAGTACTGCCTCGTTTGCAAGCTAAACCATGACCAAGGGCAGCGCCATAAGTATTTTCCCAACCACAAAAAATCGCTTTCTTCTTTTCTATCTCGGTTCGAGATCAAGCTGTCCGACGTTCGCTTTTTTCTCAAGACTCCTTTTCTCCTCTCCCCCGAGTTTGCTTCTCACAATCGGTTCTGGTGTATCTTTTGCGATGTTCAAGTTGATGAGAATGACAGTTCCTTCGCATGGTATTAA

Protein sequence

MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFLLSPEFASHNRFWCIFCDVQVDENDSSFAWY

Homology

[Close]

BLAST of CsGy1G009590 vs. NCBI nr
Match: XP_011652145.1 (PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >XP_011652149.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >XP_011652153.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >XP_011652157.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >XP_011652160.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >XP_011652164.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >KGN64412.1 hypothetical protein Csa_1G050510 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 3.2e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 60
          MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL
Sbjct: 4  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 63

Query: 61 LSPEFASHNRFWCIFCDVQVDENDSSFA 89
          LSPEFASHNRFWCIFCDVQVDENDSSFA
Sbjct: 64 LSPEFASHNRFWCIFCDVQVDENDSSFA 91

[Close]

BLAST of CsGy1G009590 vs. NCBI nr
Match: XP_011652166.1 (PREDICTED: TITAN-like protein isoform X2 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 3.2e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 60
          MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL
Sbjct: 4  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 63

Query: 61 LSPEFASHNRFWCIFCDVQVDENDSSFA 89
          LSPEFASHNRFWCIFCDVQVDENDSSFA
Sbjct: 64 LSPEFASHNRFWCIFCDVQVDENDSSFA 91

[Close]

BLAST of CsGy1G009590 vs. NCBI nr
Match: XP_011652172.1 (PREDICTED: TITAN-like protein isoform X3 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 3.2e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 60
          MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL
Sbjct: 4  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 63

Query: 61 LSPEFASHNRFWCIFCDVQVDENDSSFA 89
          LSPEFASHNRFWCIFCDVQVDENDSSFA
Sbjct: 64 LSPEFASHNRFWCIFCDVQVDENDSSFA 91

[Close]

BLAST of CsGy1G009590 vs. NCBI nr
Match: XP_008439729.1 (PREDICTED: TITAN-like protein isoform X1 [Cucumis melo] >XP_008439739.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis melo] >XP_008439747.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis melo] >XP_008439753.1 PREDICTED: TITAN-like protein isoform X1 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 7.9e-43
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 60
          MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPF 
Sbjct: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFR 60

Query: 61 LSPEFASHNRFWCIFCDVQVDENDSSFA 89
          LSPEFASHNRFWCIFCDVQVDE DSSFA
Sbjct: 61 LSPEFASHNRFWCIFCDVQVDETDSSFA 88

[Close]

BLAST of CsGy1G009590 vs. NCBI nr
Match: XP_008439800.1 (PREDICTED: TITAN-like protein isoform X2 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 7.9e-43
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 60
          MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPF 
Sbjct: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFR 60

Query: 61 LSPEFASHNRFWCIFCDVQVDENDSSFA 89
          LSPEFASHNRFWCIFCDVQVDE DSSFA
Sbjct: 61 LSPEFASHNRFWCIFCDVQVDETDSSFA 88

[Close]

BLAST of CsGy1G009590 vs. TAIR10
Match: AT4G24900.1 (unknown protein)

HSP 1 Score: 114.4 bits (285), Expect = 3.7e-26
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 3  KKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFLLS 62
          KK  KKS  E+C VC+ +HDQG RHKYFP HK SLSS L RF  K++DVRFFLK P +L 
Sbjct: 2  KKPSKKSEIEFCTVCRFHHDQGSRHKYFPRHKSSLSSLLDRFRSKIADVRFFLKNPSVLR 61

Query: 63 PEFASHNRFWCIFCDVQVDENDSSFA 89
          P+  S NR WC+FCD  + E  SSFA
Sbjct: 62 PQEQSQNRVWCVFCDEDIVELGSSFA 87

[Close]

BLAST of CsGy1G009590 vs. Swiss-Prot
Match: sp|F4JRR5|TTL_ARATH (TITAN-like protein OS=Arabidopsis thaliana OX=3702 GN=TTL PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.6e-25
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 3  KKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFLLS 62
          KK  KKS  E+C VC+ +HDQG RHKYFP HK SLSS L RF  K++DVRFFLK P +L 
Sbjct: 2  KKPSKKSEIEFCTVCRFHHDQGSRHKYFPRHKSSLSSLLDRFRSKIADVRFFLKNPSVLR 61

Query: 63 PEFASHNRFWCIFCDVQVDENDSSFA 89
          P+  S NR WC+FCD  + E  SSFA
Sbjct: 62 PQEQSQNRVWCVFCDEDIVELGSSFA 87

[Close]

BLAST of CsGy1G009590 vs. TrEMBL
Match: tr|A0A0A0LUE2|A0A0A0LUE2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050510 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 60
          MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL
Sbjct: 4  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 63

Query: 61 LSPEFASHNRFWCIFCDVQVDENDSSFA 89
          LSPEFASHNRFWCIFCDVQVDENDSSFA
Sbjct: 64 LSPEFASHNRFWCIFCDVQVDENDSSFA 91

[Close]

BLAST of CsGy1G009590 vs. TrEMBL
Match: tr|A0A1S3AZI0|A0A1S3AZI0_CUCME (TITAN-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484440 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.2e-43
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 60
          MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPF 
Sbjct: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFR 60

Query: 61 LSPEFASHNRFWCIFCDVQVDENDSSFA 89
          LSPEFASHNRFWCIFCDVQVDE DSSFA
Sbjct: 61 LSPEFASHNRFWCIFCDVQVDETDSSFA 88

[Close]

BLAST of CsGy1G009590 vs. TrEMBL
Match: tr|A0A1S4DUN7|A0A1S4DUN7_CUCME (TITAN-like protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484440 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.2e-43
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 60
          MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPF 
Sbjct: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFR 60

Query: 61 LSPEFASHNRFWCIFCDVQVDENDSSFA 89
          LSPEFASHNRFWCIFCDVQVDE DSSFA
Sbjct: 61 LSPEFASHNRFWCIFCDVQVDETDSSFA 88

[Close]

BLAST of CsGy1G009590 vs. TrEMBL
Match: tr|A0A1S3AZM1|A0A1S3AZM1_CUCME (TITAN-like protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484440 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.2e-43
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFL 60
          MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPF 
Sbjct: 1  MKKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFR 60

Query: 61 LSPEFASHNRFWCIFCDVQVDENDSSFA 89
          LSPEFASHNRFWCIFCDVQVDE DSSFA
Sbjct: 61 LSPEFASHNRFWCIFCDVQVDETDSSFA 88

[Close]

BLAST of CsGy1G009590 vs. TrEMBL
Match: tr|A0A2P5WSX6|A0A2P5WSX6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA26504 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.6e-29
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 2   KKKELKKSAYEYCLVCKLNHDQGQRHKYFPNHKKSLSSFLSRFEIKLSDVRFFLKTPFLL 61
           +KK+ KK  +E+C VCKLNH+QG RHKYFPNHK +LSSFLSRF+ K++DVRFFL+ P +L
Sbjct: 29  EKKKDKKCEFEFCKVCKLNHNQGPRHKYFPNHKTALSSFLSRFQNKINDVRFFLRNPKVL 88

Query: 62  SPEFASHNRFWCIFCDVQVDENDSSFAW 90
            PE A  NRFWC+FCD  VDE DSSFAW
Sbjct: 89  RPEHADRNRFWCVFCDTDVDELDSSFAW 116

The following BLAST results are available for this feature:

BLAST of CsGy1G009590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652145.1	3.2e-44	100.00	PREDICTED: TITAN-like protein isoform X1 [Cucumis sativus] >XP_011652149.1 PREDI...	[more]
XP_011652166.1	3.2e-44	100.00	PREDICTED: TITAN-like protein isoform X2 [Cucumis sativus]	[more]
XP_011652172.1	3.2e-44	100.00	PREDICTED: TITAN-like protein isoform X3 [Cucumis sativus]	[more]
XP_008439729.1	7.9e-43	97.73	PREDICTED: TITAN-like protein isoform X1 [Cucumis melo] >XP_008439739.1 PREDICTE...	[more]
XP_008439800.1	7.9e-43	97.73	PREDICTED: TITAN-like protein isoform X2 [Cucumis melo]	[more]

BLAST of CsGy1G009590 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24900.1	3.7e-26	60.47	unknown protein	[more]

BLAST of CsGy1G009590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4JRR5\|TTL_ARATH	6.6e-25	60.47	TITAN-like protein OS=Arabidopsis thaliana OX=3702 GN=TTL PE=2 SV=1	[more]

BLAST of CsGy1G009590 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUE2\|A0A0A0LUE2_CUCSA	2.1e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050510 PE=4 SV=1	[more]
tr\|A0A1S3AZI0\|A0A1S3AZI0_CUCME	5.2e-43	97.73	TITAN-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484440 PE=4 SV=1	[more]
tr\|A0A1S4DUN7\|A0A1S4DUN7_CUCME	5.2e-43	97.73	TITAN-like protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484440 PE=4 SV=1	[more]
tr\|A0A1S3AZM1\|A0A1S3AZM1_CUCME	5.2e-43	97.73	TITAN-like protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484440 PE=4 SV=1	[more]
tr\|A0A2P5WSX6\|A0A2P5WSX6_GOSBA	5.6e-29	68.18	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA26504 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR028015	CCDC84

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G009590.1	CsGy1G009590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028015	Coiled-coil domain-containing protein 84	PFAM	PF14968	CCDC84	coord: 13..88 e-value: 2.6E-31 score: 109.5
IPR028015	Coiled-coil domain-containing protein 84	PANTHER	PTHR31198	FAMILY NOT NAMED	coord: 7..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G009590	Csa1G050510	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G009590	ClCG03G003790	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G009590	CSPI01G09560	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G009590	CmaCh13G008060	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G009590	CmoCh13G008380	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G009590	Lsi02G005060	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G009590	CsaV3_1G009670	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G009590	Cla97C03G054920	Watermelon (97103) v2	cgybwmbB032
CsGy1G009590	Bhi08G001230	Wax gourd	cgybwgoB029
CsGy1G009590	Carg07604	Silver-seed gourd	carcgybB0989

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G009590	Wild cucumber (PI 183967)	cgybcpiB013
CsGy1G009590	Silver-seed gourd	carcgybB0373
CsGy1G009590	Silver-seed gourd	carcgybB0500
CsGy1G009590	Cucumber (Chinese Long) v3	cgybcucB010
CsGy1G009590	Watermelon (97103) v2	cgybwmbB070
CsGy1G009590	Cucumber (Gy14) v2	cgybcgybB005
CsGy1G009590	Cucurbita maxima (Rimu)	cgybcmaB025
CsGy1G009590	Cucurbita maxima (Rimu)	cgybcmaB049
CsGy1G009590	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G009590	Cucurbita moschata (Rifu)	cgybcmoB026
CsGy1G009590	Cucurbita moschata (Rifu)	cgybcmoB046
CsGy1G009590	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G009590	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G009590	Cucurbita pepo (Zucchini)	cgybcpeB049
CsGy1G009590	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G009590	Cucurbita pepo (Zucchini)	cgybcpeB123
CsGy1G009590	Cucumber (Chinese Long) v2	cgybcuB014
CsGy1G009590	Bottle gourd (USVL1VR-Ls)	cgyblsiB064
CsGy1G009590	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G009590	Melon (DHL92) v3.5.1	cgybmeB046
CsGy1G009590	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G009590	Melon (DHL92) v3.6.1	cgybmedB041
CsGy1G009590	Watermelon (Charleston Gray)	cgybwcgB069
CsGy1G009590	Watermelon (97103) v1	cgybwmB010
CsGy1G009590	Watermelon (97103) v1	cgybwmB087