CsGy1G006690 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G006690
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 4331956 .. 4332524 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCTCTTAGGTTTCATGTCCTTTTATCATTTTTGAGTAATACAAACTTGTATATGATTTGGTGACAACGAGGGAAGTAAACGTGGAGGAAATTTTCACTTCATTAATTTTTAGCAGCCTGCGGTACTATACTATTTACAATTAGGAGACTTGGATTAATGCTTATTTACAATTAGGAAACTTAATTTTACACATCCTATAGGACATAATATAAACATACAAATCTACAAATGAAATTAATTATAGAATGACCCGTTAAGAGCATACCTCTCAAGTTTCAGCAGATCCTTATGGTTTGTTCTTTTACAACTTTATTTCCCTTCCTCCCAGTTTTAGCTACCCAATTGGTTGTTCTAGTACAAGTAAACTCTATTCTTTTGTTTCTTTCAATGATAGATCTTTGCCAAACAAAATTCCTGGCTCGACCACTGATCTTTGGTTCCTGAACTCCTCTTACCGTTCTTGCCCATCCTTGGTTGAGGTGCCTTTGCACTTCAGTAGTAATAAGGAAAAGGATTTTAGTAAGTTGTTCAAGAAGAGTTATTCTGAGGCTTTGAAGATGTAG

mRNA sequence

ATGAAATCTCTTAGGTTTCATGTCCTTTTATCATTTTTGAGTAATACAAACTTTTTTAGCTACCCAATTGGTTGTTCTAGTACAAGTAAACTCTATTCTTTTGTTTCTTTCAATGATAGATCTTTGCCAAACAAAATTCCTGGCTCGACCACTGATCTTTGGTTCCTGAACTCCTCTTACCGTTCTTGCCCATCCTTGGTTGAGGTGCCTTTGCACTTCAGTAGTAATAAGGAAAAGGATTTTAGTAAGTTGTTCAAGAAGAGTTATTCTGAGGCTTTGAAGATGTAG

Coding sequence (CDS)

ATGAAATCTCTTAGGTTTCATGTCCTTTTATCATTTTTGAGTAATACAAACTTTTTTAGCTACCCAATTGGTTGTTCTAGTACAAGTAAACTCTATTCTTTTGTTTCTTTCAATGATAGATCTTTGCCAAACAAAATTCCTGGCTCGACCACTGATCTTTGGTTCCTGAACTCCTCTTACCGTTCTTGCCCATCCTTGGTTGAGGTGCCTTTGCACTTCAGTAGTAATAAGGAAAAGGATTTTAGTAAGTTGTTCAAGAAGAGTTATTCTGAGGCTTTGAAGATGTAG

Protein sequence

MKSLRFHVLLSFLSNTNFFSYPIGCSSTSKLYSFVSFNDRSLPNKIPGSTTDLWFLNSSYRSCPSLVEVPLHFSSNKEKDFSKLFKKSYSEALKM
Homology
[Close]
BLAST of CsGy1G006690 vs. NCBI nr
Match: XP_022137107.1 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 0 

Query: 19  FSYPIGCSSTSKLYSFVSFNDRSLPNKIPGSTTDLWFLNSSYRSCPSLVEVPLHFSSNKE 78
           +SYPI CSS  KL+SF +F+D  L             +N S  SC SLVEVP+H  SN +
Sbjct: 139 YSYPIDCSSKRKLHSFAAFHDGLLE-----------LMNFSSDSCQSLVEVPVHI-SNGD 198

Query: 79  KDFSKLFKKSYSEALKM 96
            DFS L +KSYS+ LKM
Sbjct: 199 DDFSGLLRKSYSDILKM 203

[Close]
BLAST of CsGy1G006690 vs. NCBI nr
Match: XP_011660349.1 (PREDICTED: probable serine/threonine-protein kinase At1g18390 [Cucumis sativus] >KGN64143.1 hypothetical protein Csa_1G042530 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 19  FSYPIGCSSTSKLYSFVSFNDRSLPNKIPGSTTDLWFLNSSYRSCPSLVEVPLHFSSNKE 78
           +SYPI CSSTSKL+SF +F++  L            F+N S  SC S VEVP+ F +N++
Sbjct: 139 YSYPIDCSSTSKLHSFGAFHEGYLE-----------FMNFSSNSCQSSVEVPMDF-NNED 198

Query: 79  KDFSKLFKKSYSEALKM 96
            DF+ L +K+Y++ LKM
Sbjct: 199 DDFTGLLRKNYTDLLKM 203

[Close]
BLAST of CsGy1G006690 vs. NCBI nr
Match: XP_016899332.1 (PREDICTED: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 4.8e-06
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 19  FSYPIGCSSTSKLYSFVSFNDRSLPNKIPGSTTDLWFLNSSYRSCPSLVEVPLHFSSNKE 78
           +SYPI C STSKL+SF +F++  L            F+N S  SC S VEVPL F +N++
Sbjct: 139 YSYPIDCFSTSKLHSFGAFHEGYLE-----------FMNFSSNSCQSSVEVPLDF-NNED 198

Query: 79  KDFSKLFKKSYSEALKM 96
            DF+ L +K+Y++ LKM
Sbjct: 199 DDFTGLLRKNYTDLLKM 203

[Close]
BLAST of CsGy1G006690 vs. NCBI nr
Match: XP_022923748.1 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 [Cucurbita moschata])

HSP 1 Score: 60.1 bits (144), Expect = 4.8e-06
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 0 

Query: 19  FSYPIGCSSTSKLYSFVSFNDRSLPNKIPGSTTDLWFLNSSYRSCPSLVEVPLHFSSNKE 78
           FSYPI CS+T+KL+SF +F+D  + +           +N S  SC S VEVP+    N++
Sbjct: 139 FSYPIHCSNTTKLHSFAAFHDGFMEH-----------MNFSVDSCQSSVEVPIDI-PNQD 198

Query: 79  KDFSKLFKKSYSEALKM 96
            DFS L +KSYS+ LKM
Sbjct: 199 DDFSGLLRKSYSDVLKM 203

[Close]
BLAST of CsGy1G006690 vs. NCBI nr
Match: XP_023519993.1 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 19  FSYPIGCSSTSKLYSFVSFNDRSLPNKIPGSTTDLWFLNSSYRSCPSLVEVPLHFSSNKE 78
           FSYPI CS+T KL+SF +F+D  +             +N S  SC S VEVP+    N++
Sbjct: 133 FSYPIHCSNTPKLHSFAAFHDGFVE-----------LMNFSVDSCQSSVEVPIDI-PNQD 192

Query: 79  KDFSKLFKKSYSEALKM 96
            DFS L +KSYS+ LKM
Sbjct: 193 DDFSGLLRKSYSDVLKM 197

[Close]
BLAST of CsGy1G006690 vs. TrEMBL
Match: tr|A0A0A0LQU2|A0A0A0LQU2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042530 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 19  FSYPIGCSSTSKLYSFVSFNDRSLPNKIPGSTTDLWFLNSSYRSCPSLVEVPLHFSSNKE 78
           +SYPI CSSTSKL+SF +F++  L            F+N S  SC S VEVP+ F +N++
Sbjct: 139 YSYPIDCSSTSKLHSFGAFHEGYLE-----------FMNFSSNSCQSSVEVPMDF-NNED 198

Query: 79  KDFSKLFKKSYSEALKM 96
            DF+ L +K+Y++ LKM
Sbjct: 199 DDFTGLLRKNYTDLLKM 203

[Close]
BLAST of CsGy1G006690 vs. TrEMBL
Match: tr|A0A1S4DTK4|A0A1S4DTK4_CUCME (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499532 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-06
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 19  FSYPIGCSSTSKLYSFVSFNDRSLPNKIPGSTTDLWFLNSSYRSCPSLVEVPLHFSSNKE 78
           +SYPI C STSKL+SF +F++  L            F+N S  SC S VEVPL F +N++
Sbjct: 139 YSYPIDCFSTSKLHSFGAFHEGYLE-----------FMNFSSNSCQSSVEVPLDF-NNED 198

Query: 79  KDFSKLFKKSYSEALKM 96
            DF+ L +K+Y++ LKM
Sbjct: 199 DDFTGLLRKNYTDLLKM 203

The following BLAST results are available for this feature:
BLAST of CsGy1G006690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022137107.14.3e-0749.35LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 [Mom... [more]
XP_011660349.11.6e-0645.45PREDICTED: probable serine/threonine-protein kinase At1g18390 [Cucumis sativus] ... [more]
XP_016899332.14.8e-0645.45PREDICTED: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-li... [more]
XP_022923748.14.8e-0645.45LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 [Cuc... [more]
XP_023519993.11.1e-0545.45LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 [Cuc... [more]
BLAST of CsGy1G006690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G006690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G006690 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQU2|A0A0A0LQU2_CUCSA1.1e-0645.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042530 PE=4 SV=1[more]
tr|A0A1S4DTK4|A0A1S4DTK4_CUCME3.2e-0645.45LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isof... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0030247 polysaccharide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G006690.1CsGy1G006690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G006690Lsi02G002030Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G006690Carg04826Silver-seed gourdcarcgybB0393
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G006690Cucumber (Chinese Long) v3cgybcucB002
CsGy1G006690Cucumber (Chinese Long) v3cgybcucB003
CsGy1G006690Watermelon (97103) v2cgybwmbB053
CsGy1G006690Watermelon (97103) v2cgybwmbB078
CsGy1G006690Wax gourdcgybwgoB013
CsGy1G006690Wax gourdcgybwgoB025
CsGy1G006690Cucumber (Gy14) v2cgybcgybB002
CsGy1G006690Cucurbita maxima (Rimu)cgybcmaB030
CsGy1G006690Cucurbita maxima (Rimu)cgybcmaB073
CsGy1G006690Cucurbita maxima (Rimu)cgybcmaB085
CsGy1G006690Cucurbita moschata (Rifu)cgybcmoB029
CsGy1G006690Cucurbita moschata (Rifu)cgybcmoB067
CsGy1G006690Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G006690Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G006690Cucurbita pepo (Zucchini)cgybcpeB069
CsGy1G006690Cucurbita pepo (Zucchini)cgybcpeB128
CsGy1G006690Cucumber (Chinese Long) v2cgybcuB001
CsGy1G006690Cucumber (Chinese Long) v2cgybcuB005
CsGy1G006690Bottle gourd (USVL1VR-Ls)cgyblsiB069
CsGy1G006690Melon (DHL92) v3.5.1cgybmeB022
CsGy1G006690Melon (DHL92) v3.5.1cgybmeB052
CsGy1G006690Melon (DHL92) v3.6.1cgybmedB020
CsGy1G006690Melon (DHL92) v3.6.1cgybmedB046
CsGy1G006690Watermelon (Charleston Gray)cgybwcgB053
CsGy1G006690Watermelon (Charleston Gray)cgybwcgB080
CsGy1G006690Watermelon (97103) v1cgybwmB064
CsGy1G006690Watermelon (97103) v1cgybwmB096
CsGy1G006690Wild cucumber (PI 183967)cgybcpiB001
CsGy1G006690Wild cucumber (PI 183967)cgybcpiB005
CsGy1G006690Silver-seed gourdcarcgybB0518
CsGy1G006690Silver-seed gourdcarcgybB0595