CsGy1G006390 (gene) Cucumber (Gy14) v2

NameCsGy1G006390
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPeptidyl-tRNA hydrolase family protein
LocationChr1 : 4153052 .. 4154050 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGTATTCTTGGTCATTTCAAAGGCAGTCGTGATTATTTCCCTCGATTAAGAATTGGTACGTGTCTTAGGGCTCTCTTAACACCTCCACACTGCCTCTATATATTATCAGCTGTTAAATGGGTGAAAATATTCTAGGCATAGGGAGACCTCCAGGGAAAATGGATGCAGCAAATTTTGTTCTTCGCCCCTTCAACGAAGAAGAACGAGAAAGTGGTGTGTAAAATGGCATCATATTTCCACTAAATGAAGCTTGTTGATAATTTAACTGAGTTTAGTTTTTGACCATCGAAATGGAATCATTTCTTTTCAGTTGAACTTTACATTGCAAGTTGGCGAAGACGCAATACGGATTCTTTTGCTCGAGGGGTTCAACAAAAGCGCAACATTTGTCAACACCAACATGGCTCTGGAACAAATAAGTTGAAAATGTTCAATATTTAAACATTTTTATAGACTCTTAAAGAACTCCATTCTATTTATTGTATGTATCAAACTGCTTTATACTCTGGCTGTCTTTGCTACAGTTTCAACTACCAACTTCCGTGTGGTGAAAAGCGTATTGCAGCAACAAACAATCAGTGTACGTAGGATTTTGAACCCTATCTATGGTACTCACATTGTTTTTCTTTGTTTTCTTCCTTTTGGATTGAAATCTCTTAGACATAAAGTTGTGATCTTTGAAGAGATCAATAAAGCTAAAAACCTCCCCCACCATGCAGAAAACCAACCGATAAAAGTTGAGTAAGGACGTGAATTGATAAAAGGCAGCTACCTCTACCCAACTTTTATTGCTTTAAATATCTCATCTTAGCAATCACCAATGGACCAATGGACCAATGGTGTCTCTTTCTTTGCCCGTCTTGTCATCTTCTTCTATATGCATTTCCTCGGTTGCCTGACCATGTAATTATCTTCTCCAGTTTAACAATAATTGATCTCATTCACATTCTCTTCTTCATGTATGCCTGTGTTTTTCAGGTTTCTGTTGAATAG

mRNA sequence

ATGAGGAGTATTCTTGGTCATTTCAAAGGCAGTCGTGATTATTTCCCTCGATTAAGAATTGGCATAGGGAGACCTCCAGGGAAAATGGATGCAGCAAATTTTGTTCTTCGCCCCTTCAACGAAGAAGAACGAGAAAGTGTTTCAACTACCAACTTCCGTGTGGTGAAAAGCGTATTGCAGCAACAAACAATCAGTGTTTCTGTTGAATAG

Coding sequence (CDS)

ATGAGGAGTATTCTTGGTCATTTCAAAGGCAGTCGTGATTATTTCCCTCGATTAAGAATTGGCATAGGGAGACCTCCAGGGAAAATGGATGCAGCAAATTTTGTTCTTCGCCCCTTCAACGAAGAAGAACGAGAAAGTGTTTCAACTACCAACTTCCGTGTGGTGAAAAGCGTATTGCAGCAACAAACAATCAGTGTTTCTGTTGAATAG

Protein sequence

MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTTNFRVVKSVLQQQTISVSVE
BLAST of CsGy1G006390 vs. NCBI nr
Match: XP_004137468.1 (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic isoform X1 [Cucumis sativus] >KGN64111.1 hypothetical protein Csa_1G042230 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 4.5e-14
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTT 51
           MRSI+ HFKGSRD FPRLRIGIGRPPGKMDAANFVLRPFN++ERE ++ T
Sbjct: 193 MRSIIDHFKGSRD-FPRLRIGIGRPPGKMDAANFVLRPFNKQEREELNFT 241

BLAST of CsGy1G006390 vs. NCBI nr
Match: XP_008457243.1 (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 4.5e-14
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTT 51
           MRSI+ HFKGSRD FPRLRIGIGRPPGKMDAANFVLRPFN++ERE ++ T
Sbjct: 193 MRSIIDHFKGSRD-FPRLRIGIGRPPGKMDAANFVLRPFNKQEREELNFT 241

BLAST of CsGy1G006390 vs. NCBI nr
Match: XP_011650491.1 (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 4.5e-14
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTT 51
           MRSI+ HFKGSRD FPRLRIGIGRPPGKMDAANFVLRPFN++ERE ++ T
Sbjct: 125 MRSIIDHFKGSRD-FPRLRIGIGRPPGKMDAANFVLRPFNKQEREELNFT 173

BLAST of CsGy1G006390 vs. NCBI nr
Match: XP_008791238.1 (PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Phoenix dactylifera])

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-14
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTTNFRVVKSV 59
           MRS++ HFKGSRD FPRLRIGIGRPPGKMD ANFVLRPFN++ERE +  T  R V++V
Sbjct: 175 MRSVINHFKGSRD-FPRLRIGIGRPPGKMDPANFVLRPFNKQEREELDFTFQRGVEAV 231

BLAST of CsGy1G006390 vs. NCBI nr
Match: XP_010923597.1 (PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Elaeis guineensis])

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-14
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTTNFRVVKSV 59
           MRS++ HFKGSRD FPRLRIGIGRPPGKMD ANFVLRPFN++ERE +  T  R ++++
Sbjct: 175 MRSVINHFKGSRD-FPRLRIGIGRPPGKMDPANFVLRPFNKQEREEIDFTFQRGIEAI 231

BLAST of CsGy1G006390 vs. TAIR10
Match: AT1G18440.1 (Peptidyl-tRNA hydrolase family protein)

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-14
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTT 51
           MRSI+   KGSRD FPRLRIGIGRPPGKMD ANFVLR FN +E+E +  T
Sbjct: 207 MRSIIDRLKGSRD-FPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHT 255

BLAST of CsGy1G006390 vs. TAIR10
Match: AT5G19830.1 (Peptidyl-tRNA hydrolase family protein)

HSP 1 Score: 53.1 bits (126), Expect = 7.7e-08
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERE 46
           ++S++ HF+G+R+ F RLRIGIG+PPG+MD   F+L+ F+   RE
Sbjct: 131 LKSVMNHFRGNRE-FARLRIGIGKPPGQMDPKAFLLQKFSMPARE 174

BLAST of CsGy1G006390 vs. TAIR10
Match: AT5G16140.1 (Peptidyl-tRNA hydrolase family protein)

HSP 1 Score: 50.8 bits (120), Expect = 3.8e-07
Identity = 22/47 (46.81%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESV 48
           ++S++GH  G R+ FPRL IGIG+PPG MD   F+L+ F+  E++ +
Sbjct: 158 VKSVMGHLDGRRN-FPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQI 203

BLAST of CsGy1G006390 vs. TAIR10
Match: AT5G38290.2 (Peptidyl-tRNA hydrolase family protein)

HSP 1 Score: 45.8 bits (107), Expect = 1.2e-05
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESV 48
           ++++  H  G R Y PRL IGIG PPG MD   F+L+ F+  ER+ +
Sbjct: 168 LKNVTEHLNGCRGY-PRLSIGIGNPPGNMDMKAFLLQKFSPLERKQM 213

BLAST of CsGy1G006390 vs. Swiss-Prot
Match: sp|Q8GW64|PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 7.6e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTT 51
           MRSI+   KGSRD FPRLRIGIGRPPGKMD ANFVLR FN +E+E +  T
Sbjct: 207 MRSIIDRLKGSRD-FPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHT 255

BLAST of CsGy1G006390 vs. Swiss-Prot
Match: sp|Q5N9Q7|PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-12
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTTNFRVVKSV 59
           +RSI+ H K +RD FPRLRIGIGRPPGKMD ANFVLRPFN +E+E +     R +++V
Sbjct: 168 VRSIINHLKQNRD-FPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAV 224

BLAST of CsGy1G006390 vs. Swiss-Prot
Match: sp|Q9M5P4|CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays OX=4577 GN=CRS2 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-06
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVST 50
           +++++ H  G R+ FPRL IGIG PPGKMD   F+L+ F+ EER  + T
Sbjct: 174 LQNVIEHLDGRRE-FPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDT 221

BLAST of CsGy1G006390 vs. Swiss-Prot
Match: sp|Q6NLS8|PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-06
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERE 46
           ++S++ HF+G+R+ F RLRIGIG+PPG+MD   F+L+ F+   RE
Sbjct: 131 LKSVMNHFRGNRE-FARLRIGIGKPPGQMDPKAFLLQKFSMPARE 174

BLAST of CsGy1G006390 vs. Swiss-Prot
Match: sp|B8G3X3|PTH_CHLAD (Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX=326427 GN=pth PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTTNFRVVKSV 59
           MRSI+G   G+ + FPRLRIGIG+PPG+MDAA++VL  F  EE   +     RV  +V
Sbjct: 115 MRSIVGQL-GTTE-FPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAV 170

BLAST of CsGy1G006390 vs. TrEMBL
Match: tr|A0A1S3C5R3|A0A1S3C5R3_CUCME (peptidyl-tRNA hydrolase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496915 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTT 51
           MRSI+ HFKGSRD FPRLRIGIGRPPGKMDAANFVLRPFN++ERE ++ T
Sbjct: 193 MRSIIDHFKGSRD-FPRLRIGIGRPPGKMDAANFVLRPFNKQEREELNFT 241

BLAST of CsGy1G006390 vs. TrEMBL
Match: tr|A0A0A0LVQ7|A0A0A0LVQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042230 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTT 51
           MRSI+ HFKGSRD FPRLRIGIGRPPGKMDAANFVLRPFN++ERE ++ T
Sbjct: 193 MRSIIDHFKGSRD-FPRLRIGIGRPPGKMDAANFVLRPFNKQEREELNFT 241

BLAST of CsGy1G006390 vs. TrEMBL
Match: tr|A0A2H3XZY8|A0A2H3XZY8_PHODC (peptidyl-tRNA hydrolase, mitochondrial OS=Phoenix dactylifera OX=42345 GN=LOC103708193 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-14
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTTNFRVVKSV 59
           MRS++ HFKGSRD FPRLRIGIGRPPGKMD ANFVLRPFN++ERE +  T  R V++V
Sbjct: 175 MRSVINHFKGSRD-FPRLRIGIGRPPGKMDPANFVLRPFNKQEREELDFTFQRGVEAV 231

BLAST of CsGy1G006390 vs. TrEMBL
Match: tr|A0A061G1P6|A0A061G1P6_THECC (Peptidyl-tRNA hydrolase family protein OS=Theobroma cacao OX=3641 GN=TCM_012279 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-13
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTT 51
           MRSI+ HFKGSRD FPRLRIGIGRPPG+MDA NFVLRPFN++ERE +  T
Sbjct: 191 MRSIIDHFKGSRD-FPRLRIGIGRPPGRMDAVNFVLRPFNKQEREELGFT 239

BLAST of CsGy1G006390 vs. TrEMBL
Match: tr|A0A0K9R321|A0A0K9R321_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_112450 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.3e-13
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 0

Query: 1   MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTT 51
           MRS++ HFKG+RD FPRLRIGIGRPPGKMDAANFVLRPF+++ERE +  T
Sbjct: 202 MRSVIDHFKGNRD-FPRLRIGIGRPPGKMDAANFVLRPFSKQEREELDLT 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004137468.14.5e-1482.00PREDICTED: peptidyl-tRNA hydrolase, chloroplastic isoform X1 [Cucumis sativus] >... [more]
XP_008457243.14.5e-1482.00PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo][more]
XP_011650491.14.5e-1482.00PREDICTED: peptidyl-tRNA hydrolase, chloroplastic isoform X2 [Cucumis sativus][more]
XP_008791238.17.7e-1472.41PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Phoenix dactylifera][more]
XP_010923597.17.7e-1468.97PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Elaeis guineensis][more]
Match NameE-valueIdentityDescription
AT1G18440.14.2e-1472.00Peptidyl-tRNA hydrolase family protein[more]
AT5G19830.17.7e-0851.11Peptidyl-tRNA hydrolase family protein[more]
AT5G16140.13.8e-0746.81Peptidyl-tRNA hydrolase family protein[more]
AT5G38290.21.2e-0544.68Peptidyl-tRNA hydrolase family protein[more]
Match NameE-valueIdentityDescription
sp|Q8GW64|PTHC_ARATH7.6e-1372.00Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g18... [more]
sp|Q5N9Q7|PTHM_ORYSJ1.3e-1262.07Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 ... [more]
sp|Q9M5P4|CRS2_MAIZE1.1e-0648.98Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea m... [more]
sp|Q6NLS8|PTHM_ARATH1.4e-0651.11Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g19... [more]
sp|B8G3X3|PTH_CHLAD1.8e-0651.72Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX=3... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3C5R3|A0A1S3C5R3_CUCME3.0e-1482.00peptidyl-tRNA hydrolase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496915 P... [more]
tr|A0A0A0LVQ7|A0A0A0LVQ7_CUCSA3.0e-1482.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042230 PE=3 SV=1[more]
tr|A0A2H3XZY8|A0A2H3XZY8_PHODC5.1e-1472.41peptidyl-tRNA hydrolase, mitochondrial OS=Phoenix dactylifera OX=42345 GN=LOC103... [more]
tr|A0A061G1P6|A0A061G1P6_THECC2.5e-1378.00Peptidyl-tRNA hydrolase family protein OS=Theobroma cacao OX=3641 GN=TCM_012279 ... [more]
tr|A0A0K9R321|A0A0K9R321_SPIOL3.3e-1376.00Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_112450 PE=3 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004045aminoacyl-tRNA hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR036416Pept_tRNA_hydro_sf
IPR001328Pept_tRNA_hydro
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004045 aminoacyl-tRNA hydrolase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G006390.1CsGy1G006390.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 68..69
IPR001328Peptidyl-tRNA hydrolasePFAMPF01195Pept_tRNA_hydrocoord: 1..62
e-value: 3.5E-9
score: 36.9
IPR001328Peptidyl-tRNA hydrolasePANTHERPTHR17224PEPTIDYL-TRNA HYDROLASEcoord: 1..59
IPR036416Peptidyl-tRNA hydrolase superfamilyGENE3DG3DSA:3.40.50.1470coord: 1..68
e-value: 4.3E-13
score: 51.1
IPR036416Peptidyl-tRNA hydrolase superfamilySUPERFAMILYSSF53178Peptidyl-tRNA hydrolase-likecoord: 1..59

The following gene(s) are paralogous to this gene:

None