CsGy1G006390 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGAGTATTCTTGGTCATTTCAAAGGCAGTCGTGATTATTTCCCTCGATTAAGAATTGGTACGTGTCTTAGGGCTCTCTTAACACCTCCACACTGCCTCTATATATTATCAGCTGTTAAATGGGTGAAAATATTCTAGGCATAGGGAGACCTCCAGGGAAAATGGATGCAGCAAATTTTGTTCTTCGCCCCTTCAACGAAGAAGAACGAGAAAGTGGTGTGTAAAATGGCATCATATTTCCACTAAATGAAGCTTGTTGATAATTTAACTGAGTTTAGTTTTTGACCATCGAAATGGAATCATTTCTTTTCAGTTGAACTTTACATTGCAAGTTGGCGAAGACGCAATACGGATTCTTTTGCTCGAGGGGTTCAACAAAAGCGCAACATTTGTCAACACCAACATGGCTCTGGAACAAATAAGTTGAAAATGTTCAATATTTAAACATTTTTATAGACTCTTAAAGAACTCCATTCTATTTATTGTATGTATCAAACTGCTTTATACTCTGGCTGTCTTTGCTACAGTTTCAACTACCAACTTCCGTGTGGTGAAAAGCGTATTGCAGCAACAAACAATCAGTGTACGTAGGATTTTGAACCCTATCTATGGTACTCACATTGTTTTTCTTTGTTTTCTTCCTTTTGGATTGAAATCTCTTAGACATAAAGTTGTGATCTTTGAAGAGATCAATAAAGCTAAAAACCTCCCCCACCATGCAGAAAACCAACCGATAAAAGTTGAGTAAGGACGTGAATTGATAAAAGGCAGCTACCTCTACCCAACTTTTATTGCTTTAAATATCTCATCTTAGCAATCACCAATGGACCAATGGACCAATGGTGTCTCTTTCTTTGCCCGTCTTGTCATCTTCTTCTATATGCATTTCCTCGGTTGCCTGACCATGTAATTATCTTCTCCAGTTTAACAATAATTGATCTCATTCACATTCTCTTCTTCATGTATGCCTGTGTTTTTCAGGTTTCTGTTGAATAG ATGAGGAGTATTCTTGGTCATTTCAAAGGCAGTCGTGATTATTTCCCTCGATTAAGAATTGGCATAGGGAGACCTCCAGGGAAAATGGATGCAGCAAATTTTGTTCTTCGCCCCTTCAACGAAGAAGAACGAGAAAGTGTTTCAACTACCAACTTCCGTGTGGTGAAAAGCGTATTGCAGCAACAAACAATCAGTGTTTCTGTTGAATAG ATGAGGAGTATTCTTGGTCATTTCAAAGGCAGTCGTGATTATTTCCCTCGATTAAGAATTGGCATAGGGAGACCTCCAGGGAAAATGGATGCAGCAAATTTTGTTCTTCGCCCCTTCAACGAAGAAGAACGAGAAAGTGTTTCAACTACCAACTTCCGTGTGGTGAAAAGCGTATTGCAGCAACAAACAATCAGTGTTTCTGTTGAATAG MRSILGHFKGSRDYFPRLRIGIGRPPGKMDAANFVLRPFNEEERESVSTTNFRVVKSVLQQQTISVSVE
BLAST of CsGy1G006390 vs. NCBI nr
Match: XP_004137468.1 (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic isoform X1 [Cucumis sativus] >KGN64111.1 hypothetical protein Csa_1G042230 [Cucumis sativus]) HSP 1 Score: 86.3 bits (212), Expect = 4.5e-14 Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of CsGy1G006390 vs. NCBI nr
Match: XP_008457243.1 (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo]) HSP 1 Score: 86.3 bits (212), Expect = 4.5e-14 Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of CsGy1G006390 vs. NCBI nr
Match: XP_011650491.1 (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 86.3 bits (212), Expect = 4.5e-14 Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of CsGy1G006390 vs. NCBI nr
Match: XP_008791238.1 (PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Phoenix dactylifera]) HSP 1 Score: 85.5 bits (210), Expect = 7.7e-14 Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 0
BLAST of CsGy1G006390 vs. NCBI nr
Match: XP_010923597.1 (PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Elaeis guineensis]) HSP 1 Score: 85.5 bits (210), Expect = 7.7e-14 Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 0
BLAST of CsGy1G006390 vs. TAIR10
Match: AT1G18440.1 (Peptidyl-tRNA hydrolase family protein) HSP 1 Score: 73.9 bits (180), Expect = 4.2e-14 Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0
BLAST of CsGy1G006390 vs. TAIR10
Match: AT5G19830.1 (Peptidyl-tRNA hydrolase family protein) HSP 1 Score: 53.1 bits (126), Expect = 7.7e-08 Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0
BLAST of CsGy1G006390 vs. TAIR10
Match: AT5G16140.1 (Peptidyl-tRNA hydrolase family protein) HSP 1 Score: 50.8 bits (120), Expect = 3.8e-07 Identity = 22/47 (46.81%), Postives = 34/47 (72.34%), Query Frame = 0
BLAST of CsGy1G006390 vs. TAIR10
Match: AT5G38290.2 (Peptidyl-tRNA hydrolase family protein) HSP 1 Score: 45.8 bits (107), Expect = 1.2e-05 Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0
BLAST of CsGy1G006390 vs. Swiss-Prot
Match: sp|Q8GW64|PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g18440 PE=2 SV=2) HSP 1 Score: 73.9 bits (180), Expect = 7.6e-13 Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0
BLAST of CsGy1G006390 vs. Swiss-Prot
Match: sp|Q5N9Q7|PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0693900 PE=2 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 1.3e-12 Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 0
BLAST of CsGy1G006390 vs. Swiss-Prot
Match: sp|Q9M5P4|CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays OX=4577 GN=CRS2 PE=1 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 1.1e-06 Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of CsGy1G006390 vs. Swiss-Prot
Match: sp|Q6NLS8|PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g19830 PE=2 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 1.4e-06 Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0
BLAST of CsGy1G006390 vs. Swiss-Prot
Match: sp|B8G3X3|PTH_CHLAD (Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX=326427 GN=pth PE=3 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0
BLAST of CsGy1G006390 vs. TrEMBL
Match: tr|A0A1S3C5R3|A0A1S3C5R3_CUCME (peptidyl-tRNA hydrolase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496915 PE=3 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14 Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of CsGy1G006390 vs. TrEMBL
Match: tr|A0A0A0LVQ7|A0A0A0LVQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042230 PE=3 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14 Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of CsGy1G006390 vs. TrEMBL
Match: tr|A0A2H3XZY8|A0A2H3XZY8_PHODC (peptidyl-tRNA hydrolase, mitochondrial OS=Phoenix dactylifera OX=42345 GN=LOC103708193 PE=3 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 5.1e-14 Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 0
BLAST of CsGy1G006390 vs. TrEMBL
Match: tr|A0A061G1P6|A0A061G1P6_THECC (Peptidyl-tRNA hydrolase family protein OS=Theobroma cacao OX=3641 GN=TCM_012279 PE=3 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 2.5e-13 Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0
BLAST of CsGy1G006390 vs. TrEMBL
Match: tr|A0A0K9R321|A0A0K9R321_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_112450 PE=3 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 3.3e-13 Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |