CsGy1G006170 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G006170
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 3997050 .. 3997520 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCATGCTTTGATTGTGGGGGCCGTCTGGTTTAGACAGGCCTACGGTGGAGTGAGGCGGAGCTTTGAAGTGGCGGCAGAGATGGTGGAGGAGTGGAAAGACATGATTATAGGATTCTGTGTGTCATCAGCTATTGGAATAGCAACAGTGTCTGTTCATATCAAAACCGAGCTTCCAAATTCATTTCAGCTTCTATCCATTGCTGTTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCAACTCCATTTTCGAAACACTTTCAAAGATTCTGTATTGTGTTGGCGGCTTATTGTATGCCTCAAGCTGTTTCATTGCTACGGCTATTCCCTATGGTACAAATTTTCATATCATTGTTATTGTCCTTTATACAATCTTCTGCATCATCTTCATCAGCTTCATCTTTCATCACTCACAACCCTTCACCACCTTCCTCCTCCGACACCCTTCCTCTTTAATTTGA

mRNA sequence

ATGTTGCATGCTTTGATTGTGGGGGCCGTCTGGTTTAGACAGGCCTACGGTGGAGTGAGGCGGAGCTTTGAAGTGGCGGCAGAGATGGTGGAGGAGTGGAAAGACATGATTATAGGATTCTGTGTGTCATCAGCTATTGGAATAGCAACAGTGTCTGTTCATATCAAAACCGAGCTTCCAAATTCATTTCAGCTTCTATCCATTGCTGTTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCAACTCCATTTTCGAAACACTTTCAAAGATTCTGTATTGTGTTGGCGGCTTATTGTATGCCTCAAGCTGTTTCATTGCTACGGCTATTCCCTATGGTACAAATTTTCATATCATTGTTATTGTCCTTTATACAATCTTCTGCATCATCTTCATCAGCTTCATCTTTCATCACTCACAACCCTTCACCACCTTCCTCCTCCGACACCCTTCCTCTTTAATTTGA

Coding sequence (CDS)

ATGTTGCATGCTTTGATTGTGGGGGCCGTCTGGTTTAGACAGGCCTACGGTGGAGTGAGGCGGAGCTTTGAAGTGGCGGCAGAGATGGTGGAGGAGTGGAAAGACATGATTATAGGATTCTGTGTGTCATCAGCTATTGGAATAGCAACAGTGTCTGTTCATATCAAAACCGAGCTTCCAAATTCATTTCAGCTTCTATCCATTGCTGTTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCAACTCCATTTTCGAAACACTTTCAAAGATTCTGTATTGTGTTGGCGGCTTATTGTATGCCTCAAGCTGTTTCATTGCTACGGCTATTCCCTATGGTACAAATTTTCATATCATTGTTATTGTCCTTTATACAATCTTCTGCATCATCTTCATCAGCTTCATCTTTCATCACTCACAACCCTTCACCACCTTCCTCCTCCGACACCCTTCCTCTTTAATTTGA

Protein sequence

MLHALIVGAVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYGTNFHIIVIVLYTIFCIIFISFIFHHSQPFTTFLLRHPSSLI
Homology
[Close]
BLAST of CsGy1G006170 vs. NCBI nr
Match: KGN64089.1 (hypothetical protein Csa_1G040520 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 4.1e-55
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MLHALIVGAVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELP 60
           MLHALIVGAVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELP
Sbjct: 1   MLHALIVGAVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELP 60

Query: 61  NSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYGTNF 119
           NSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY ++F
Sbjct: 61  NSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF 118

[Close]
BLAST of CsGy1G006170 vs. NCBI nr
Match: KGN59865.1 (hypothetical protein Csa_3G851175 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 2.7e-46
Identity = 103/129 (79.84%), Postives = 114/129 (88.37%), Query Frame = 0 

Query: 9   AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSI 68
           AVWFRQ YGGVRRS EV AEMVEE K+MIIGFC+SSAIGIATVSV  KT+LPNSFQ LSI
Sbjct: 10  AVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSI 69

Query: 69  AVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYGTNFHIIVIVLYTI 128
           AVL+CF+SV FARMI+SIF+TLSKILYC GG L A+ CFIATAIPY T+FHIIVIVLY+I
Sbjct: 70  AVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSI 129

Query: 129 FCIIFISFI 138
           FCIIF+  I
Sbjct: 130 FCIIFVMLI 138

[Close]
BLAST of CsGy1G006170 vs. NCBI nr
Match: KGN64088.1 (hypothetical protein Csa_1G040510 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-33
Identity = 85/124 (68.55%), Postives = 96/124 (77.42%), Query Frame = 0 

Query: 4   ALIVG-AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNS 63
           ALIV    WFRQ Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNS
Sbjct: 6   ALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNS 65

Query: 64  FQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY-GTNFHII 123
           FQ LS+ +LLCFVSVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y   +FH I
Sbjct: 66  FQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTI 125

Query: 124 VIVL 126
           VIVL
Sbjct: 126 VIVL 129

[Close]
BLAST of CsGy1G006170 vs. NCBI nr
Match: KGN64090.1 (hypothetical protein Csa_1G041520 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 75/129 (58.14%), Postives = 93/129 (72.09%), Query Frame = 0 

Query: 16  YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKT--ELPNSFQLLSIAVLLC 75
           +GG  R   + AEMVEEWK+MI+  CVSSAIGIATVSV I+T  +LP +FQ LSI VLLC
Sbjct: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91

Query: 76  FVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYGTNFHIIVIVLYTIFCIIF 135
           F  V FA+M   IF+T+SKILYCVGG L  ++ FIATAIP+   F II+ +LY +FC IF
Sbjct: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIF 151

Query: 136 ISFIFHHSQ 143
           +     H+Q
Sbjct: 152 MLITTIHNQ 158

[Close]
BLAST of CsGy1G006170 vs. NCBI nr
Match: KGN60535.1 (hypothetical protein Csa_2G000430 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 8.7e-13
Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 0 

Query: 17  GGVRRSF-EVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 76
           G V  SF EV A+MVEE K  IIGF  +    IA +SV  K +LP+SF+ +SI  LLC +
Sbjct: 3   GEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLL 62

Query: 77  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYGTNFHIIVIVLYTIFCIIFIS 136
             V A +I+  F+T +K+LY +G     +S  IA AIP    FH+++I+L+ I CI  + 
Sbjct: 63  CFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVI 122

Query: 137 FIFHHSQP 144
            + +   P
Sbjct: 123 LMSNTCSP 130

[Close]
BLAST of CsGy1G006170 vs. TrEMBL
Match: tr|A0A0A0LSX4|A0A0A0LSX4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.7e-55
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MLHALIVGAVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELP 60
           MLHALIVGAVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELP
Sbjct: 1   MLHALIVGAVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELP 60

Query: 61  NSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYGTNF 119
           NSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY ++F
Sbjct: 61  NSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF 118

[Close]
BLAST of CsGy1G006170 vs. TrEMBL
Match: tr|A0A0A0LCY2|A0A0A0LCY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.8e-46
Identity = 103/129 (79.84%), Postives = 114/129 (88.37%), Query Frame = 0 

Query: 9   AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSI 68
           AVWFRQ YGGVRRS EV AEMVEE K+MIIGFC+SSAIGIATVSV  KT+LPNSFQ LSI
Sbjct: 10  AVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSI 69

Query: 69  AVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYGTNFHIIVIVLYTI 128
           AVL+CF+SV FARMI+SIF+TLSKILYC GG L A+ CFIATAIPY T+FHIIVIVLY+I
Sbjct: 70  AVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSI 129

Query: 129 FCIIFISFI 138
           FCIIF+  I
Sbjct: 130 FCIIFVMLI 138

[Close]
BLAST of CsGy1G006170 vs. TrEMBL
Match: tr|A0A0A0LQP5|A0A0A0LQP5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.0e-33
Identity = 85/124 (68.55%), Postives = 96/124 (77.42%), Query Frame = 0 

Query: 4   ALIVG-AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNS 63
           ALIV    WFRQ Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNS
Sbjct: 6   ALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNS 65

Query: 64  FQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY-GTNFHII 123
           FQ LS+ +LLCFVSVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y   +FH I
Sbjct: 66  FQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTI 125

Query: 124 VIVL 126
           VIVL
Sbjct: 126 VIVL 129

[Close]
BLAST of CsGy1G006170 vs. TrEMBL
Match: tr|A0A0A0LQB6|A0A0A0LQB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.2e-28
Identity = 75/129 (58.14%), Postives = 93/129 (72.09%), Query Frame = 0 

Query: 16  YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKT--ELPNSFQLLSIAVLLC 75
           +GG  R   + AEMVEEWK+MI+  CVSSAIGIATVSV I+T  +LP +FQ LSI VLLC
Sbjct: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91

Query: 76  FVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYGTNFHIIVIVLYTIFCIIF 135
           F  V FA+M   IF+T+SKILYCVGG L  ++ FIATAIP+   F II+ +LY +FC IF
Sbjct: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIF 151

Query: 136 ISFIFHHSQ 143
           +     H+Q
Sbjct: 152 MLITTIHNQ 158

[Close]
BLAST of CsGy1G006170 vs. TrEMBL
Match: tr|A0A0A0LEV1|A0A0A0LEV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.7e-13
Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 0 

Query: 17  GGVRRSF-EVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 76
           G V  SF EV A+MVEE K  IIGF  +    IA +SV  K +LP+SF+ +SI  LLC +
Sbjct: 3   GEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLL 62

Query: 77  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYGTNFHIIVIVLYTIFCIIFIS 136
             V A +I+  F+T +K+LY +G     +S  IA AIP    FH+++I+L+ I CI  + 
Sbjct: 63  CFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVI 122

Query: 137 FIFHHSQP 144
            + +   P
Sbjct: 123 LMSNTCSP 130

The following BLAST results are available for this feature:
BLAST of CsGy1G006170 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64089.14.1e-5597.46hypothetical protein Csa_1G040520 [Cucumis sativus][more]
KGN59865.12.7e-4679.84hypothetical protein Csa_3G851175 [Cucumis sativus][more]
KGN64088.11.5e-3368.55hypothetical protein Csa_1G040510 [Cucumis sativus][more]
KGN64090.11.2e-2758.14hypothetical protein Csa_1G041520 [Cucumis sativus][more]
KGN60535.18.7e-1341.41hypothetical protein Csa_2G000430 [Cucumis sativus][more]
BLAST of CsGy1G006170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G006170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G006170 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSX4|A0A0A0LSX4_CUCSA2.7e-5597.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1[more]
tr|A0A0A0LCY2|A0A0A0LCY2_CUCSA1.8e-4679.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1[more]
tr|A0A0A0LQP5|A0A0A0LQP5_CUCSA1.0e-3368.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1[more]
tr|A0A0A0LQB6|A0A0A0LQB6_CUCSA8.2e-2858.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1[more]
tr|A0A0A0LEV1|A0A0A0LEV1_CUCSA5.7e-1341.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G006170.1CsGy1G006170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G006170Cp4.1LG20g00960Cucurbita pepo (Zucchini)cgybcpeB069
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G006170Wild cucumber (PI 183967)cgybcpiB001
CsGy1G006170Wild cucumber (PI 183967)cgybcpiB005
CsGy1G006170Silver-seed gourdcarcgybB0393
CsGy1G006170Silver-seed gourdcarcgybB0469
CsGy1G006170Silver-seed gourdcarcgybB0516
CsGy1G006170Silver-seed gourdcarcgybB0518
CsGy1G006170Silver-seed gourdcarcgybB0595
CsGy1G006170Cucumber (Chinese Long) v3cgybcucB002
CsGy1G006170Cucumber (Chinese Long) v3cgybcucB003
CsGy1G006170Cucumber (Chinese Long) v3cgybcucB013
CsGy1G006170Cucumber (Chinese Long) v3cgybcucB037
CsGy1G006170Watermelon (97103) v2cgybwmbB053
CsGy1G006170Watermelon (97103) v2cgybwmbB057
CsGy1G006170Watermelon (97103) v2cgybwmbB078
CsGy1G006170Wax gourdcgybwgoB047
CsGy1G006170Wax gourdcgybwgoB069
CsGy1G006170Wax gourdcgybwgoB104
CsGy1G006170Cucumber (Gy14) v2cgybcgybB002
CsGy1G006170Cucumber (Gy14) v2cgybcgybB007
CsGy1G006170Cucumber (Gy14) v2cgybcgybB027
CsGy1G006170Cucurbita maxima (Rimu)cgybcmaB023
CsGy1G006170Cucurbita maxima (Rimu)cgybcmaB030
CsGy1G006170Cucurbita maxima (Rimu)cgybcmaB073
CsGy1G006170Cucurbita maxima (Rimu)cgybcmaB085
CsGy1G006170Cucurbita maxima (Rimu)cgybcmaB101
CsGy1G006170Cucurbita moschata (Rifu)cgybcmoB024
CsGy1G006170Cucurbita moschata (Rifu)cgybcmoB029
CsGy1G006170Cucurbita moschata (Rifu)cgybcmoB067
CsGy1G006170Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G006170Cucurbita moschata (Rifu)cgybcmoB095
CsGy1G006170Cucurbita pepo (Zucchini)cgybcpeB013
CsGy1G006170Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G006170Cucurbita pepo (Zucchini)cgybcpeB046
CsGy1G006170Cucurbita pepo (Zucchini)cgybcpeB128
CsGy1G006170Cucumber (Chinese Long) v2cgybcuB001
CsGy1G006170Cucumber (Chinese Long) v2cgybcuB005
CsGy1G006170Cucumber (Chinese Long) v2cgybcuB015
CsGy1G006170Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G006170Bottle gourd (USVL1VR-Ls)cgyblsiB069
CsGy1G006170Melon (DHL92) v3.5.1cgybmeB022
CsGy1G006170Melon (DHL92) v3.5.1cgybmeB052
CsGy1G006170Melon (DHL92) v3.6.1cgybmedB004
CsGy1G006170Melon (DHL92) v3.6.1cgybmedB020
CsGy1G006170Melon (DHL92) v3.6.1cgybmedB046
CsGy1G006170Watermelon (Charleston Gray)cgybwcgB053
CsGy1G006170Watermelon (Charleston Gray)cgybwcgB080
CsGy1G006170Watermelon (97103) v1cgybwmB064
CsGy1G006170Watermelon (97103) v1cgybwmB096