CsGy1G005090 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G005090
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	NAC domain-containing protein 86
Location	Chr1 : 3423527 .. 3423998 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTATGTTCAGATTGAGTCTTTACAGTTGGTGAATGAAAAAAGAAAATCAAAAGCTGAAATTAAAAATATAAAGCAGAAGAAAAGAAAGATGACAAATCAGAAGGGAGATGAAAATTGCAAGTGTTTTTTGTTTTGTTTTGTTTATTGGGTTGCAGGATTCTTACGCCTTGTGTAGAGTATTCAAGAAAAATGGAATATGTTCAGAAGTGGAAGAAATATTAGTAGGTGGGCAAAGCAGCAGCAGCAGCTTGTCATTTATGGAGAACTCAAACTCAACATCACAAACTTTAGTCAATGATTACGAAACTCTATCACCTGATATTCTGATGGCAGCTTCATCTTCTTGTGTGGAAGAAGAGGAAAAGGATGATTCATGGATGCAATTCATTACAGAAGATGCATGGTGTGCTTCCAATTCATCAGCCATCGGCCTCGATGACCTCTCTCACCTGACTTTCACCAATTGA

mRNA sequence

ATGAACTATGTTCAGATTGAGTCTTTACAGTTGGATTCTTACGCCTTGTGTAGAGTATTCAAGAAAAATGGAATATGTTCAGAAGTGGAAGAAATATTAGTAGGTGGGCAAAGCAGCAGCAGCAGCTTGTCATTTATGGAGAACTCAAACTCAACATCACAAACTTTAGTCAATGATTACGAAACTCTATCACCTGATATTCTGATGGCAGCTTCATCTTCTTGTGTGGAAGAAGAGGAAAAGGATGATTCATGGATGCAATTCATTACAGAAGATGCATGGTGTGCTTCCAATTCATCAGCCATCGGCCTCGATGACCTCTCTCACCTGACTTTCACCAATTGA

Coding sequence (CDS)

ATGAACTATGTTCAGATTGAGTCTTTACAGTTGGATTCTTACGCCTTGTGTAGAGTATTCAAGAAAAATGGAATATGTTCAGAAGTGGAAGAAATATTAGTAGGTGGGCAAAGCAGCAGCAGCAGCTTGTCATTTATGGAGAACTCAAACTCAACATCACAAACTTTAGTCAATGATTACGAAACTCTATCACCTGATATTCTGATGGCAGCTTCATCTTCTTGTGTGGAAGAAGAGGAAAAGGATGATTCATGGATGCAATTCATTACAGAAGATGCATGGTGTGCTTCCAATTCATCAGCCATCGGCCTCGATGACCTCTCTCACCTGACTTTCACCAATTGA

Protein sequence

MNYVQIESLQLDSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILMAASSSCVEEEEKDDSWMQFITEDAWCASNSSAIGLDDLSHLTFTN

Homology

[Close]

BLAST of CsGy1G005090 vs. NCBI nr
Match: XP_004137396.1 (PREDICTED: NAC domain-containing protein 86 [Cucumis sativus] >KGN63971.1 hypothetical protein Csa_1G032410 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 12  DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX 71
           DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX
Sbjct: 146 DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX 205

Query: 72  XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 115
           XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN
Sbjct: 206 XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 248

[Close]

BLAST of CsGy1G005090 vs. NCBI nr
Match: XP_008439242.1 (PREDICTED: NAC domain-containing protein 86 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 12  DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX 71
           DSYALCRVFKKNGICSEVEE+LVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX
Sbjct: 146 DSYALCRVFKKNGICSEVEELLVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX 205

Query: 72  XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 115
           XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN
Sbjct: 206 XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 248

[Close]

BLAST of CsGy1G005090 vs. NCBI nr
Match: XP_022998740.1 (NAC domain-containing protein 86-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 143.3 bits (360), Expect = 5.2e-31
Identity = 91/105 (86.67%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 12  DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFME--NSNSTSQTLVNDYETLSPDILX 71
           DSYALCRVFKKNGICSEVEE     Q   SSLSFM+  NSNSTSQTLVNDYETLSPD+L 
Sbjct: 164 DSYALCRVFKKNGICSEVEE-----QGGQSSLSFMDHHNSNSTSQTLVNDYETLSPDVLM 223

Query: 72  XXXXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 115
           XXXXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLD+LSHLTFTN
Sbjct: 224 XXXXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDELSHLTFTN 263

[Close]

BLAST of CsGy1G005090 vs. NCBI nr
Match: XP_023001123.1 (NAC domain-containing protein 86 [Cucurbita maxima])

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 12  DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDIL-XX 71
           DSYALCRVFKKNGICSEVEE L  GQSSSSSLSF++NSNSTSQTLVNDYETLSPD+L XX
Sbjct: 146 DSYALCRVFKKNGICSEVEEQL-SGQSSSSSLSFIDNSNSTSQTLVNDYETLSPDVLXXX 205

Query: 72  XXXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFT 114
           XXXXXXXXXXXXX WMQFITEDAWCASNSS I L DLSHLTFT
Sbjct: 206 XXXXXXXXXXXXXXWMQFITEDAWCASNSSPIALHDLSHLTFT 247

[Close]

BLAST of CsGy1G005090 vs. NCBI nr
Match: XP_022949589.1 (NAC domain-containing protein 86-like isoform X1 [Cucurbita moschata] >XP_023523518.1 NAC domain-containing protein 86-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 89/105 (84.76%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 12  DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFME--NSNSTSQTLVNDYETLSPDILX 71
           DSYALCRVFKKNGICSEVEE     Q   SSLSFM+  NSNSTSQTLVNDYE LSPD+L 
Sbjct: 164 DSYALCRVFKKNGICSEVEE-----QGGQSSLSFMDHHNSNSTSQTLVNDYENLSPDVLM 223

Query: 72  XXXXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 115
            XXXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLD+LSHLTFTN
Sbjct: 224 AXXXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDELSHLTFTN 263

[Close]

BLAST of CsGy1G005090 vs. TAIR10
Match: AT3G17730.1 (NAC domain containing protein 57)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-13
Identity = 46/99 (46.46%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 8   SLQLDSYALCRVFKKNGICSEV--EEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSP 67
           SLQ DSYALCRVFKKNGICSE+  E  L  GQ S ++ S  E ++         YET+SP
Sbjct: 143 SLQ-DSYALCRVFKKNGICSELESERQLQTGQCSFTTASMEEINSXXXXXXXXXYETMSP 202

Query: 68  DILXXXXXXXXXXXXXXXSWMQFITEDAW-CASNSSAIG 104
           ++                SWMQFIT+DAW  +SN +A+G
Sbjct: 203 EVGVSSACVEEVVDDKDDSWMQFITDDAWDTSSNGAAMG 240

[Close]

BLAST of CsGy1G005090 vs. TrEMBL
Match: tr|A0A0A0LVE2|A0A0A0LVE2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032410 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.0e-40
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 12  DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX 71
           DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX
Sbjct: 146 DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX 205

Query: 72  XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 115
           XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN
Sbjct: 206 XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 248

[Close]

BLAST of CsGy1G005090 vs. TrEMBL
Match: tr|A0A1S3AYC8|A0A1S3AYC8_CUCME (NAC domain-containing protein 86 OS=Cucumis melo OX=3656 GN=LOC103484068 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-39
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 12  DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX 71
           DSYALCRVFKKNGICSEVEE+LVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX
Sbjct: 146 DSYALCRVFKKNGICSEVEELLVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX 205

Query: 72  XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 115
           XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN
Sbjct: 206 XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 248

[Close]

BLAST of CsGy1G005090 vs. TrEMBL
Match: tr|A0A2K1XH72|A0A2K1XH72_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G030200v3 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 54/106 (50.94%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 9   LQLDSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDIL 68
           +Q+DSYALCRVFKKNGICSE+EE    GQ +S+SLS ME   S+ Q ++N+YET+SPD+ 
Sbjct: 144 IQVDSYALCRVFKKNGICSEIEE---QGQCTSTSLSLME---SSPQGVINEYETMSPDV- 203

Query: 69  XXXXXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 115
                          SWMQFIT++ WC+SN++ +G +++SH TFT+
Sbjct: 204 PIASSSCVEEEDKDDSWMQFITDEPWCSSNNAMVGGEEISHSTFTD 242

[Close]

BLAST of CsGy1G005090 vs. TrEMBL
Match: tr|U5FPE3|U5FPE3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G030200v3 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.7e-19
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 12  DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX 71
           DSYALCRVFKKNGICSE+EE    GQ +S+SLS ME   S+ Q ++N+YET+SPD+    
Sbjct: 146 DSYALCRVFKKNGICSEIEE---QGQCTSTSLSLME---SSPQGVINEYETMSPDV-PIA 205

Query: 72  XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 115
                       SWMQFIT++ WC+SN++ +G +++SH TFT+
Sbjct: 206 SSSCVEEEDKDDSWMQFITDEPWCSSNNAMVGGEEISHSTFTD 241

[Close]

BLAST of CsGy1G005090 vs. TrEMBL
Match: tr|A0A068TRH5|A0A068TRH5_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00022769001 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.6e-18
Identity = 50/103 (48.54%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 12  DSYALCRVFKKNGICSEVEEILVGGQSSSSSLSFMENSNSTSQTLVNDYETLSPDILXXX 71
           DSYALCRVFKKNG+C+E+EE     Q   SSLS ++     SQ +VNDYET+SPD+    
Sbjct: 146 DSYALCRVFKKNGVCTEIEE-----QQGQSSLSLLD----YSQGVVNDYETMSPDVPLAS 205

Query: 72  XXXXXXXXXXXXSWMQFITEDAWCASNSSAIGLDDLSHLTFTN 115
                       SWMQFIT+DAWC+S +  +G +++S + FTN
Sbjct: 206 STSCMEEEDKDDSWMQFITDDAWCSSTAPFVGQEEVSQVAFTN 239

The following BLAST results are available for this feature:

BLAST of CsGy1G005090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137396.1	1.4e-39	100.00	PREDICTED: NAC domain-containing protein 86 [Cucumis sativus] >KGN63971.1 hypoth...	[more]
XP_008439242.1	2.3e-39	99.03	PREDICTED: NAC domain-containing protein 86 [Cucumis melo]	[more]
XP_022998740.1	5.2e-31	86.67	NAC domain-containing protein 86-like isoform X1 [Cucurbita maxima]	[more]
XP_023001123.1	1.5e-30	89.32	NAC domain-containing protein 86 [Cucurbita maxima]	[more]
XP_022949589.1	2.0e-30	84.76	NAC domain-containing protein 86-like isoform X1 [Cucurbita moschata] >XP_023523...	[more]

BLAST of CsGy1G005090 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17730.1	1.6e-13	46.46	NAC domain containing protein 57	[more]

BLAST of CsGy1G005090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G005090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVE2\|A0A0A0LVE2_CUCSA	9.0e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032410 PE=4 SV=1	[more]
tr\|A0A1S3AYC8\|A0A1S3AYC8_CUCME	1.5e-39	99.03	NAC domain-containing protein 86 OS=Cucumis melo OX=3656 GN=LOC103484068 PE=4 SV...	[more]
tr\|A0A2K1XH72\|A0A2K1XH72_POPTR	1.0e-19	50.94	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G030200v3 PE=...	[more]
tr\|U5FPE3\|U5FPE3_POPTR	6.7e-19	51.46	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G030200v3 PE=...	[more]
tr\|A0A068TRH5\|A0A068TRH5_COFCA	9.6e-18	48.54	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00022769001 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G005090.1	CsGy1G005090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31989	FAMILY NOT NAMED	coord: 7..114
None	No IPR available	PANTHER	PTHR31989:SF8	NAC DOMAIN CONTAINING PROTEIN 57	coord: 7..114

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G005090	Silver-seed gourd	carcgybB0526
CsGy1G005090	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G005090	Watermelon (97103) v2	cgybwmbB053
CsGy1G005090	Wax gourd	cgybwgoB031
CsGy1G005090	Cucurbita maxima (Rimu)	cgybcmaB064
CsGy1G005090	Cucurbita maxima (Rimu)	cgybcmaB105
CsGy1G005090	Cucurbita moschata (Rifu)	cgybcmoB060
CsGy1G005090	Cucurbita moschata (Rifu)	cgybcmoB099
CsGy1G005090	Cucurbita pepo (Zucchini)	cgybcpeB081
CsGy1G005090	Cucurbita pepo (Zucchini)	cgybcpeB098
CsGy1G005090	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G005090	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G005090	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G005090	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G005090	Watermelon (Charleston Gray)	cgybwcgB053
CsGy1G005090	Watermelon (97103) v1	cgybwmB064
CsGy1G005090	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G005090	Silver-seed gourd	carcgybB0395