CsGy1G003650 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G003650
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein YLS3
Location	Chr1 : 2311141 .. 2311957 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTCTTCCACATCTCCCCCTTCCTCAACAAGCTATCTCATACCTAAGTCTGCTGTTTCTCCTGCACGTTCTACCGATCACCATATCACAAGGTCCAACCATATCAACTCCCACCATAGCTCAATGCACGACGAGTATTCTTCCATTGGCTTCTTGTGCACCTTTTGTGCAAGGTGTAACACCAACACCACCTATGGGATGCTGTGATAACCTGAAACAACTCTACAACGTTGTCCCTAACTGCCTTTGCCTCTTGCTGAATGGCACTAACTTAAGCTCTTTCCCTATCAACACTACTAGAGCCCTCCAGCTGCCTGATATTTGCAGCCTTCAAGTTAACATCTCCACTTGTTCAGGTAAAACTATAATCCTGTCATCCTAAAAGATGTTATATTTTTTCTACTCTCTACTTCTCTCTACAATCTGATCCCACGGTTTGACATTTATAATTCTTTGAACGGTTCTTTGAAGCTCTCCTTGGGCCACCTAGTCCACCCAGTTCTCATGTTCCTCCTAGAGTACACATCAACTCCACAATTAGCAATGCTACGGTTCTAGGTATACTTCAGATATTCATCCAGACGATATAGTTTTTGGTTCAGTTCTACTTCTAATACAGCCTTCGAATATGTAACAATCTGACTCTACTTTTGTAAATTTCAGCTTCTCCAATGACTCAACCAACACCAAAACCTAGCATTGTGGGTTTAGGATTGGGCAAGATCAGTGCTAGTTTCAAATTAAAGGGAGGAATTCAGCTCACAGTAGTGATAACAATAAGCACTTTTCTGTTTCTAGTAGTACTTTATTGA

mRNA sequence

ATGGCATCTCTTCCACATCTCCCCCTTCCTCAACAAGCTATCTCATACCTAAGTCTGCTGTTTCTCCTGCACGTTCTACCGATCACCATATCACAAGGTCCAACCATATCAACTCCCACCATAGCTCAATGCACGACGAGTATTCTTCCATTGGCTTCTTGTGCACCTTTTGTGCAAGGTGTAACACCAACACCACCTATGGGATGCTGTGATAACCTGAAACAACTCTACAACGTTGTCCCTAACTGCCTTTGCCTCTTGCTGAATGGCACTAACTTAAGCTCTTTCCCTATCAACACTACTAGAGCCCTCCAGCTGCCTGATATTTGCAGCCTTCAAGTTAACATCTCCACTTGTTCAGCTCTCCTTGGGCCACCTAGTCCACCCAGTTCTCATGTTCCTCCTAGAGTACACATCAACTCCACAATTAGCAATGCTACGGTTCTAGCTTCTCCAATGACTCAACCAACACCAAAACCTAGCATTGTGGGTTTAGGATTGGGCAAGATCAGTGCTAGTTTCAAATTAAAGGGAGGAATTCAGCTCACAGTAGTGATAACAATAAGCACTTTTCTGTTTCTAGTAGTACTTTATTGA

Coding sequence (CDS)

ATGGCATCTCTTCCACATCTCCCCCTTCCTCAACAAGCTATCTCATACCTAAGTCTGCTGTTTCTCCTGCACGTTCTACCGATCACCATATCACAAGGTCCAACCATATCAACTCCCACCATAGCTCAATGCACGACGAGTATTCTTCCATTGGCTTCTTGTGCACCTTTTGTGCAAGGTGTAACACCAACACCACCTATGGGATGCTGTGATAACCTGAAACAACTCTACAACGTTGTCCCTAACTGCCTTTGCCTCTTGCTGAATGGCACTAACTTAAGCTCTTTCCCTATCAACACTACTAGAGCCCTCCAGCTGCCTGATATTTGCAGCCTTCAAGTTAACATCTCCACTTGTTCAGCTCTCCTTGGGCCACCTAGTCCACCCAGTTCTCATGTTCCTCCTAGAGTACACATCAACTCCACAATTAGCAATGCTACGGTTCTAGCTTCTCCAATGACTCAACCAACACCAAAACCTAGCATTGTGGGTTTAGGATTGGGCAAGATCAGTGCTAGTTTCAAATTAAAGGGAGGAATTCAGCTCACAGTAGTGATAACAATAAGCACTTTTCTGTTTCTAGTAGTACTTTATTGA

Protein sequence

MASLPHLPLPQQAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQGVTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTCSALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGIQLTVVITISTFLFLVVLY

Homology

[Close]

BLAST of CsGy1G003650 vs. NCBI nr
Match: XP_004138342.2 (PREDICTED: protein YLS3 [Cucumis sativus])

HSP 1 Score: 382.5 bits (981), Expect = 8.8e-103
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MASLPHLPLPQQAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG 60
           MASLPHLPLPQQAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG
Sbjct: 34  MASLPHLPLPQQAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG 93

Query: 61  VTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTCS 120
           VTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTCS
Sbjct: 94  VTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTCS 153

Query: 121 ALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGI 180
           ALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGI
Sbjct: 154 ALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGI 213

Query: 181 QLTVVITISTFLFLVVLY 199
           QLTVVITISTFLFLVVLY
Sbjct: 214 QLTVVITISTFLFLVVLY 231

[Close]

BLAST of CsGy1G003650 vs. NCBI nr
Match: XP_008453387.1 (PREDICTED: protein YLS3 [Cucumis melo])

HSP 1 Score: 363.2 bits (931), Expect = 5.5e-97
Identity = 187/198 (94.44%), Postives = 193/198 (97.47%), Query Frame = 0


Query: 1   MASLPHLPLPQQAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG 60
           MASLP+LPLPQ AISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG
Sbjct: 1   MASLPYLPLPQLAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG 60

Query: 61  VTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTCS 120
           VTPTPPMGCCDNLKQLYN+VPNCLCLLLN TNLSSFPINTTRALQLPD+CSLQVNISTCS
Sbjct: 61  VTPTPPMGCCDNLKQLYNIVPNCLCLLLNDTNLSSFPINTTRALQLPDLCSLQVNISTCS 120

Query: 121 ALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGI 180
           ALLG PSPPSSHVPPRVHINSTISNATVLASP+TQPTPKPSIVGLGLGKISASFKL+GGI
Sbjct: 121 ALLGSPSPPSSHVPPRVHINSTISNATVLASPVTQPTPKPSIVGLGLGKISASFKLRGGI 180

Query: 181 QLTVVITISTFLFLVVLY 199
           QLT VI I+TFLFLVVLY
Sbjct: 181 QLTAVIAITTFLFLVVLY 198

[Close]

BLAST of CsGy1G003650 vs. NCBI nr
Match: KGN63812.1 (hypothetical protein Csa_1G022510 [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 1.4e-95
Identity = 185/196 (94.39%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MASLPHLPLPQQAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG 60
           MASLPHLPLPQQAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG
Sbjct: 1   MASLPHLPLPQQAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG 60

Query: 61  VTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTCS 120
           VTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTCS
Sbjct: 61  VTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTCS 120

Query: 121 ALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGI 180
           ALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGI
Sbjct: 121 ALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGI 180

Query: 181 QLTVVITISTFLFLVV 197
           QLT +  +  F+ L++
Sbjct: 181 QLTQLAVMFFFIRLLL 196

[Close]

BLAST of CsGy1G003650 vs. NCBI nr
Match: XP_022987249.1 (protein YLS3 [Cucurbita maxima])

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 150/199 (75.38%), Postives = 166/199 (83.42%), Query Frame = 0


Query: 1   MASLPHLPLPQQAISYLSLLFLLHV-LPITISQGPTISTPTIAQCTTSILPLASCAPFVQ 60
           MASLP+LP        L+LL LLHV LPI +SQ PT S+PTIAQCTTS+L LASCAPFVQ
Sbjct: 1   MASLPYLPC-------LTLLLLLHVTLPIAVSQDPTPSSPTIAQCTTSLLQLASCAPFVQ 60

Query: 61  GVTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTC 120
           G+  TPPM CC NLKQLY  VP+CLCLLLNGT LSSFPINTTRA QLPD+CSLQVNIS C
Sbjct: 61  GMASTPPMTCCGNLKQLYTSVPSCLCLLLNGTTLSSFPINTTRATQLPDLCSLQVNISAC 120

Query: 121 SALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGG 180
           SALL PPSPPSSHV PRV+ NSTI+NATVLA+P+ QPTPKPS+VGLGLG ISASFK + G
Sbjct: 121 SALLEPPSPPSSHVSPRVNTNSTITNATVLATPVGQPTPKPSMVGLGLGSISASFKPRAG 180

Query: 181 IQLTVVITISTFLFLVVLY 199
           IQLTV I + TFLFLVVL+
Sbjct: 181 IQLTVAIAMKTFLFLVVLH 192

[Close]

BLAST of CsGy1G003650 vs. NCBI nr
Match: XP_022134615.1 (protein YLS3 isoform X2 [Momordica charantia])

HSP 1 Score: 207.6 bits (527), Expect = 3.9e-50
Identity = 111/172 (64.53%), Postives = 127/172 (73.84%), Query Frame = 0


Query: 27  PITISQGPTISTPTIAQCTTSILPLASCAPFVQGVTPTPPMGCCDNLKQLYNVVPNCLCL 86
           P TISQG   S+P IAQCT S+LPLASCAPFVQG+   P M CCDNLKQLY  VP CLC+
Sbjct: 25  PTTISQGLISSSPGIAQCTASLLPLASCAPFVQGIASVPAMACCDNLKQLYTNVPYCLCI 84

Query: 87  LLNGTNLSSFPINTTRALQLPDICSLQVNISTCS--ALLGPPSPPSSHVPPRVHINSTIS 146
           LLNGT LSSFP+NTTRALQLPD+CSLQVNISTCS   +L PPS                 
Sbjct: 85  LLNGTTLSSFPLNTTRALQLPDLCSLQVNISTCSGTTVLVPPSSXXXXXXXXXXXXXXXX 144

Query: 147 NATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGIQLTVVITISTFLFLVV 197
           NATVLASP+ QP PKPSI+GLG+G+ISASFK +  I+ T+ I + TFLFLV+
Sbjct: 145 NATVLASPVAQPAPKPSILGLGMGRISASFKPRMAIEFTIAIAMKTFLFLVL 196

[Close]

BLAST of CsGy1G003650 vs. TAIR10
Match: AT1G73890.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-21
Identity = 64/154 (41.56%), Postives = 83/154 (53.90%), Query Frame = 0


Query: 42  AQCTTSILPLASCAPFVQGVTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSS--FPIN 101
           A C + +L LA C PFVQG    P   CCD+L Q+Y+    CLCL LN T+  S  FPIN
Sbjct: 28  ATCASRLLSLAPCGPFVQGFAQLPAQPCCDSLNQIYSQEATCLCLFLNNTSTLSPAFPIN 87

Query: 102 TTRALQLPDICSLQVNISTCSALLGPPSPPSSHVPPRVHINSTIS--------NATVLAS 161
            T ALQLP +C++  N STCS+     +P  S          T S        N+ V A+
Sbjct: 88  QTLALQLPPLCNIPANSSTCSSSFPGEAPSDSSSVAXXXXXXTGSQISQGAKNNSRVAAT 147

Query: 162 PMTQPTPKP-SIVGLGLGKISASFKLKGGIQLTV 185
           P+ Q  P+P S +GLG G  S+  K +  IQLT+
Sbjct: 148 PVAQMAPRPTSFMGLGYGLKSSGSKSE--IQLTI 179

[Close]

BLAST of CsGy1G003650 vs. TAIR10
Match: AT2G44300.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-10
Identity = 33/94 (35.11%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 43  QCTTSILPLASCAPFVQGVTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLS--SFPINT 102
           +CT  ++ +A+C P+VQG   +P   CC  LKQ+ N    CLC+++   N       IN 
Sbjct: 34  ECTEQLVGMATCLPYVQGQAKSPTPDCCSGLKQVLNSNKKCLCVIIQDRNDPDLGLQINV 93

Query: 103 TRALQLPDICSLQVNISTCSALLG-PPSPPSSHV 134
           + AL LP +C    +++ C ALL   P+ P + V
Sbjct: 94  SLALALPSVCHAAADVTKCPALLHLDPNSPDAQV 127

[Close]

BLAST of CsGy1G003650 vs. TAIR10
Match: AT2G44290.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-10
Identity = 33/94 (35.11%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 43  QCTTSILPLASCAPFVQGVTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLS--SFPINT 102
           +CT  ++ +A+C P+VQG   +P   CC  LKQ+ N    CLC+++   N       +N 
Sbjct: 35  ECTAQLVGMATCLPYVQGKAKSPTPDCCSGLKQVINSDMKCLCMIIQERNDPDLGLQVNV 94

Query: 103 TRALQLPDICSLQVNISTCSALLG-PPSPPSSHV 134
           + AL LP +C    +I+ C ALL   P+ P + V
Sbjct: 95  SLALALPSVCHATADITKCPALLHLDPNSPDAQV 128

[Close]

BLAST of CsGy1G003650 vs. TAIR10
Match: AT3G22600.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 4.9e-07
Identity = 30/97 (30.93%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 28  ITISQGPTISTPTIAQ--CTTSILPLASCAPFVQGVTPTPPMGCCDNLKQLYNVVPNCLC 87
           +T+      ST   AQ  CT +++ ++ C  ++ G + +P   CC+ L ++    P+CLC
Sbjct: 10  LTVFMAVMSSTMVSAQSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVVQSSPDCLC 69

Query: 88  LLLNGTNLS-SFPINTTRALQLPDICSLQV-NISTCS 121
            +LNG        +N T+AL LP  C++Q   +S C+
Sbjct: 70  QVLNGGGSQLGINVNQTQALGLPRACNVQTPPVSRCN 106

[Close]

BLAST of CsGy1G003650 vs. TAIR10
Match: AT5G09370.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 4.9e-07
Identity = 34/104 (32.69%), Postives = 53/104 (50.96%), Query Frame = 0


Query: 35  TISTPTI---AQCTTSILPLASCAPFVQ--GVTPTPPMGCCDNLKQLYNVVPNCLCLLLN 94
           ++S+P +   + C T ++ L  C PF+   G   TP   CC +LK + +  P CLC  L 
Sbjct: 16  SVSSPYVHGASDCDTLVITLFPCLPFISIGGTADTPTASCCSSLKNILDTKPICLCEGLK 75

Query: 95  GTNLSSFPINTTRALQLPDICSLQV-NISTCSALLGPPSPPSSH 133
              L    +N T++  LP  C L    +S C + L P SPP+++
Sbjct: 76  KAPL-GIKLNVTKSATLPVACKLNAPPVSACDS-LPPASPPTAN 117

[Close]

BLAST of CsGy1G003650 vs. Swiss-Prot
Match: sp|O64864|YLS3_ARATH (Protein YLS3 OS=Arabidopsis thaliana OX=3702 GN=YLS3 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-09
Identity = 33/94 (35.11%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 43  QCTTSILPLASCAPFVQGVTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLS--SFPINT 102
           +CT  ++ +A+C P+VQG   +P   CC  LKQ+ N    CLC+++   N       +N 
Sbjct: 35  ECTAQLVGMATCLPYVQGKAKSPTPDCCSGLKQVINSDMKCLCMIIQERNDPDLGLQVNV 94

Query: 103 TRALQLPDICSLQVNISTCSALLG-PPSPPSSHV 134
           + AL LP +C    +I+ C ALL   P+ P + V
Sbjct: 95  SLALALPSVCHATADITKCPALLHLDPNSPDAQV 128

[Close]

BLAST of CsGy1G003650 vs. TrEMBL
Match: tr|A0A1S3BVJ6|A0A1S3BVJ6_CUCME (protein YLS3 OS=Cucumis melo OX=3656 GN=LOC103494119 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 3.6e-97
Identity = 187/198 (94.44%), Postives = 193/198 (97.47%), Query Frame = 0


Query: 1   MASLPHLPLPQQAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG 60
           MASLP+LPLPQ AISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG
Sbjct: 1   MASLPYLPLPQLAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG 60

Query: 61  VTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTCS 120
           VTPTPPMGCCDNLKQLYN+VPNCLCLLLN TNLSSFPINTTRALQLPD+CSLQVNISTCS
Sbjct: 61  VTPTPPMGCCDNLKQLYNIVPNCLCLLLNDTNLSSFPINTTRALQLPDLCSLQVNISTCS 120

Query: 121 ALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGI 180
           ALLG PSPPSSHVPPRVHINSTISNATVLASP+TQPTPKPSIVGLGLGKISASFKL+GGI
Sbjct: 121 ALLGSPSPPSSHVPPRVHINSTISNATVLASPVTQPTPKPSIVGLGLGKISASFKLRGGI 180

Query: 181 QLTVVITISTFLFLVVLY 199
           QLT VI I+TFLFLVVLY
Sbjct: 181 QLTAVIAITTFLFLVVLY 198

[Close]

BLAST of CsGy1G003650 vs. TrEMBL
Match: tr|A0A0A0LSN1|A0A0A0LSN1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G022510 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 9.0e-96
Identity = 185/196 (94.39%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MASLPHLPLPQQAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG 60
           MASLPHLPLPQQAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG
Sbjct: 1   MASLPHLPLPQQAISYLSLLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPFVQG 60

Query: 61  VTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTCS 120
           VTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTCS
Sbjct: 61  VTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTCS 120

Query: 121 ALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGI 180
           ALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGI
Sbjct: 121 ALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKISASFKLKGGI 180

Query: 181 QLTVVITISTFLFLVV 197
           QLT +  +  F+ L++
Sbjct: 181 QLTQLAVMFFFIRLLL 196

[Close]

BLAST of CsGy1G003650 vs. TrEMBL
Match: tr|M5WTE9|M5WTE9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa025857mg PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.7e-44
Identity = 112/188 (59.57%), Postives = 134/188 (71.28%), Query Frame = 0


Query: 1   MASLPHLPLPQQ--AISYLS-LLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPF 60
           MASL H  L Q   A+S L+ LLFL+ + P  +SQ P+ S+PTIAQCTT +LPLASCA F
Sbjct: 1   MASL-HSSLLQHPFALSSLTLLLFLISLPPSILSQDPSSSSPTIAQCTTRLLPLASCASF 60

Query: 61  VQGVTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNIS 120
           VQG + +P   CCDNLK LY+  P+CLCLLLN T LSSFPINTTRALQLP +CSLQV+IS
Sbjct: 61  VQGTSQSPAQSCCDNLKLLYSQQPDCLCLLLNSTTLSSFPINTTRALQLPALCSLQVDIS 120

Query: 121 TCSALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKI-SASFKL 180
            CS +  PPS PSS V    + NST  N+T+ ASPM    P+PS++GLG G+  SA  KL
Sbjct: 121 ACSGVHVPPSTPSSQVSFGTNTNSTAVNSTIAASPMPLNAPRPSMMGLGFGRTSSAGTKL 180

Query: 181 KGGIQLTV 185
           K G  LTV
Sbjct: 181 KMGSYLTV 187

[Close]

BLAST of CsGy1G003650 vs. TrEMBL
Match: tr|A0A251PC38|A0A251PC38_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G220400 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.8e-43
Identity = 116/203 (57.14%), Postives = 141/203 (69.46%), Query Frame = 0


Query: 1   MASLPHLPLPQQ--AISYLS-LLFLLHVLPITISQGPTISTPTIAQCTTSILPLASCAPF 60
           MASL H  L Q   A+S L+ LLFL+ + P  +SQ P+ S+PTIAQCTT +LPLASCA F
Sbjct: 1   MASL-HSSLLQHPFALSSLTLLLFLISLPPSILSQDPSSSSPTIAQCTTRLLPLASCASF 60

Query: 61  VQGVTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNIS 120
           VQG + +P   CCDNLK LY+  P+CLCLLLN T LSSFPINTTRALQLP +CSLQV+IS
Sbjct: 61  VQGTSQSPAQSCCDNLKLLYSQQPDCLCLLLNSTTLSSFPINTTRALQLPALCSLQVDIS 120

Query: 121 TCSALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQPTPKPSIVGLGLGKI-SASFKL 180
            CS +  PPS PSS V    + NST  N+T+ ASPM    P+PS++GLG G+  SA  KL
Sbjct: 121 ACSGVHVPPSTPSSQVSFGTNTNSTAVNSTIAASPMPLNAPRPSMMGLGFGRTSSAGTKL 180

Query: 181 KGGIQLTV-VITISTFLFLVVLY 199
           K G  LTV  + +  FL   VL+
Sbjct: 181 KMGSYLTVAALAMGGFLVSGVLF 202

[Close]

BLAST of CsGy1G003650 vs. TrEMBL
Match: tr|A0A2P6P3P4|A0A2P6P3P4_ROSCH (Putative bifunctional inhibitor/plant lipid transfer protein/seed storage helical OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0185251 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.1e-40
Identity = 103/201 (51.24%), Postives = 130/201 (64.68%), Query Frame = 0


Query: 1   MASLPHLPLPQQAISYLSLLFLLHVLP-ITISQGPTISTPTIAQCTTSILPLASCAPFVQ 60
           MASLP       AIS L+LLFL+ + P  T+SQ P  S PT+AQC   +LPLA+CAPFVQ
Sbjct: 1   MASLPF------AISSLTLLFLISLFPSSTLSQDPNSSIPTVAQCAPQLLPLATCAPFVQ 60

Query: 61  GVTPTPPMGCCDNLKQLYNVVPNCLCLLLNGTNLSSFPINTTRALQLPDICSLQVNISTC 120
           G  P+P   CCDNL  +Y+  P CLCLLLN T LSSFPINTT ALQLP +C+L V+ S C
Sbjct: 61  GTAPSPAKSCCDNLNLVYSQQPRCLCLLLNSTTLSSFPINTTLALQLPALCTLPVDASAC 120

Query: 121 SALLGPPSPPSSHVPPRVHINSTISNATVLASPMTQ-PTPKPSIVGLGLGK-ISASFKLK 180
           S    PPS PSS V    +  S  +N TV ASPM Q P P+P+++G+G G+  S   K K
Sbjct: 121 SRAQVPPSTPSSQVSFGANNTSPATNTTVAASPMVQAPPPRPTMMGVGFGRNASTGLKSK 180

Query: 181 GGIQLTVVITISTFLFLVVLY 199
            G  L V++ ++ FL   +L+
Sbjct: 181 TGSYLAVMLIMAGFLMPGILF 195

The following BLAST results are available for this feature:

BLAST of CsGy1G003650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138342.2	8.8e-103	100.00	PREDICTED: protein YLS3 [Cucumis sativus]	[more]
XP_008453387.1	5.5e-97	94.44	PREDICTED: protein YLS3 [Cucumis melo]	[more]
KGN63812.1	1.4e-95	94.39	hypothetical protein Csa_1G022510 [Cucumis sativus]	[more]
XP_022987249.1	1.2e-70	75.38	protein YLS3 [Cucurbita maxima]	[more]
XP_022134615.1	3.9e-50	64.53	protein YLS3 isoform X2 [Momordica charantia]	[more]

BLAST of CsGy1G003650 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73890.1	6.0e-21	41.56	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT2G44300.1	1.6e-10	35.11	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT2G44290.1	1.6e-10	35.11	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G22600.1	4.9e-07	30.93	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G09370.1	4.9e-07	32.69	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

BLAST of CsGy1G003650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O64864\|YLS3_ARATH	2.9e-09	35.11	Protein YLS3 OS=Arabidopsis thaliana OX=3702 GN=YLS3 PE=2 SV=1	[more]

BLAST of CsGy1G003650 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BVJ6\|A0A1S3BVJ6_CUCME	3.6e-97	94.44	protein YLS3 OS=Cucumis melo OX=3656 GN=LOC103494119 PE=4 SV=1	[more]
tr\|A0A0A0LSN1\|A0A0A0LSN1_CUCSA	9.0e-96	94.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G022510 PE=4 SV=1	[more]
tr\|M5WTE9\|M5WTE9_PRUPE	2.7e-44	59.57	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa025857m...	[more]
tr\|A0A251PC38\|A0A251PC38_PRUPE	1.8e-43	57.14	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G220400 PE=4 SV=1	[more]
tr\|A0A2P6P3P4\|A0A2P6P3P4_ROSCH	9.1e-40	51.24	Putative bifunctional inhibitor/plant lipid transfer protein/seed storage helica...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036312	Bifun_inhib/LTP/seed_sf
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G003650.1	CsGy1G003650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 44..119 e-value: 3.2E-4 score: 30.0
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 36..119 e-value: 1.7E-15 score: 56.8
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 40..119 e-value: 7.0E-15 score: 56.6
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 16..195
None	No IPR available	PANTHER	PTHR33044:SF5	PROTEASE INHIBITOR/SEED STORAGE/LIPID TRANSFER PROTEIN FAMILY PROTEIN	coord: 16..195
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 51..112 e-value: 1.56398E-13 score: 61.2887
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 43..119

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G003650	Cla018982	Watermelon (97103) v1	cgybwmB095
CsGy1G003650	Csa1G022510	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G003650	MELO3C017299	Melon (DHL92) v3.5.1	cgybmeB050
CsGy1G003650	ClCG06G014900	Watermelon (Charleston Gray)	cgybwcgB079
CsGy1G003650	CSPI01G03720	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G003650	CmaCh10G002410	Cucurbita maxima (Rimu)	cgybcmaB018
CsGy1G003650	CmoCh10G002550	Cucurbita moschata (Rifu)	cgybcmoB017
CsGy1G003650	Lsi06G013390	Bottle gourd (USVL1VR-Ls)	cgyblsiB068
CsGy1G003650	Cp4.1LG18g07420	Cucurbita pepo (Zucchini)	cgybcpeB041
CsGy1G003650	Bhi01G002712	Wax gourd	cgybwgoB011
CsGy1G003650	Carg17916	Silver-seed gourd	carcgybB0468

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G003650	Cucumber (Gy14) v2	cgybcgybB002
CsGy1G003650	Cucumber (Gy14) v2	cgybcgybB028
CsGy1G003650	Cucurbita maxima (Rimu)	cgybcmaB029
CsGy1G003650	Cucurbita maxima (Rimu)	cgybcmaB077
CsGy1G003650	Cucurbita maxima (Rimu)	cgybcmaB088
CsGy1G003650	Cucurbita maxima (Rimu)	cgybcmaB098
CsGy1G003650	Cucurbita maxima (Rimu)	cgybcmaB131
CsGy1G003650	Cucurbita moschata (Rifu)	cgybcmoB028
CsGy1G003650	Cucurbita moschata (Rifu)	cgybcmoB071
CsGy1G003650	Cucurbita moschata (Rifu)	cgybcmoB091
CsGy1G003650	Cucurbita moschata (Rifu)	cgybcmoB123
CsGy1G003650	Cucurbita pepo (Zucchini)	cgybcpeB010
CsGy1G003650	Cucurbita pepo (Zucchini)	cgybcpeB020
CsGy1G003650	Cucurbita pepo (Zucchini)	cgybcpeB063
CsGy1G003650	Cucurbita pepo (Zucchini)	cgybcpeB073
CsGy1G003650	Cucurbita pepo (Zucchini)	cgybcpeB096
CsGy1G003650	Cucurbita pepo (Zucchini)	cgybcpeB127
CsGy1G003650	Cucumber (Chinese Long) v2	cgybcuB004
CsGy1G003650	Cucumber (Chinese Long) v2	cgybcuB033
CsGy1G003650	Bottle gourd (USVL1VR-Ls)	cgyblsiB021
CsGy1G003650	Bottle gourd (USVL1VR-Ls)	cgyblsiB049
CsGy1G003650	Melon (DHL92) v3.5.1	cgybmeB006
CsGy1G003650	Melon (DHL92) v3.5.1	cgybmeB026
CsGy1G003650	Melon (DHL92) v3.6.1	cgybmedB006
CsGy1G003650	Melon (DHL92) v3.6.1	cgybmedB025
CsGy1G003650	Melon (DHL92) v3.6.1	cgybmedB044
CsGy1G003650	Watermelon (Charleston Gray)	cgybwcgB054
CsGy1G003650	Watermelon (Charleston Gray)	cgybwcgB059
CsGy1G003650	Watermelon (97103) v1	cgybwmB038
CsGy1G003650	Watermelon (97103) v1	cgybwmB065
CsGy1G003650	Wild cucumber (PI 183967)	cgybcpiB003
CsGy1G003650	Wild cucumber (PI 183967)	cgybcpiB030
CsGy1G003650	Silver-seed gourd	carcgybB0394
CsGy1G003650	Silver-seed gourd	carcgybB0519
CsGy1G003650	Silver-seed gourd	carcgybB0594
CsGy1G003650	Silver-seed gourd	carcgybB0830
CsGy1G003650	Silver-seed gourd	carcgybB1025
CsGy1G003650	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G003650	Cucumber (Chinese Long) v3	cgybcucB004
CsGy1G003650	Cucumber (Chinese Long) v3	cgybcucB038
CsGy1G003650	Watermelon (97103) v2	cgybwmbB054
CsGy1G003650	Watermelon (97103) v2	cgybwmbB059
CsGy1G003650	Watermelon (97103) v2	cgybwmbB077
CsGy1G003650	Wax gourd	cgybwgoB036
CsGy1G003650	Wax gourd	cgybwgoB068