CsGy1G003190 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTTTGTTTCCCCTCACATTCTGAAGTTTATAGTACAATTTTATACATTGGTTTAATAATTTAATTGCGGATGGAACAGGTAGTTATCTTAAAACACACGATTTCCTACAACCACAAGAGCGCATAAGGAAGGCCAGTACAAAGGAAGAGACGGATGTGGAGAGGCCACCGCCACCTGCACCACCACCCTCCGTCGAGCATATTCTCCCGGGAGGAATCGGGACTTATAGTATAAGTCACGTTTCGTATTTTGACCAGAGGGTGGTTCTGCCGAAGCCAGAAGGTTCGGTTTTCACTGGTGTTCGATCCAGTAGCAGTGCCGAGAGAAACGATGAGAACTCCAACTGCAGTTCTTTCGCAGCGGCCGGAAGTGGATTCACTCTTTGGGAAGAATCTTCAGTGAAAAAGGGAAAGACAGGGAAGGAGAATAATGTGGGAGATAGACCCCATGGTATGATACTTACAAAACCTTCTCATTTGCATTGTCGCATGCAAAATTAA ATGAGTAGTTATCTTAAAACACACGATTTCCTACAACCACAAGAGCGCATAAGGAAGGCCAGTACAAAGGAAGAGACGGATGTGGAGAGGCCACCGCCACCTGCACCACCACCCTCCGTCGAGCATATTCTCCCGGGAGGAATCGGGACTTATAGTATAAGTCACGTTTCGTATTTTGACCAGAGGGTGGTTCTGCCGAAGCCAGAAGGTTCGGTTTTCACTGGTGTTCGATCCAGTAGCAGTGCCGAGAGAAACGATGAGAACTCCAACTGCAGTTCTTTCGCAGCGGCCGGAAGTGGATTCACTCTTTGGGAAGAATCTTCAGTGAAAAAGGGAAAGACAGGGAAGGAGAATAATGTGGGAGATAGACCCCATGGTATGATACTTACAAAACCTTCTCATTTGCATTGTCGCATGCAAAATTAA ATGAGTAGTTATCTTAAAACACACGATTTCCTACAACCACAAGAGCGCATAAGGAAGGCCAGTACAAAGGAAGAGACGGATGTGGAGAGGCCACCGCCACCTGCACCACCACCCTCCGTCGAGCATATTCTCCCGGGAGGAATCGGGACTTATAGTATAAGTCACGTTTCGTATTTTGACCAGAGGGTGGTTCTGCCGAAGCCAGAAGGTTCGGTTTTCACTGGTGTTCGATCCAGTAGCAGTGCCGAGAGAAACGATGAGAACTCCAACTGCAGTTCTTTCGCAGCGGCCGGAAGTGGATTCACTCTTTGGGAAGAATCTTCAGTGAAAAAGGGAAAGACAGGGAAGGAGAATAATGTGGGAGATAGACCCCATGGTATGATACTTACAAAACCTTCTCATTTGCATTGTCGCATGCAAAATTAA MSSYLKTHDFLQPQERIRKASTKEETDVERPPPPAPPPSVEHILPGGIGTYSISHVSYFDQRVVLPKPEGSVFTGVRSSSSAERNDENSNCSSFAAAGSGFTLWEESSVKKGKTGKENNVGDRPHGMILTKPSHLHCRMQN
BLAST of CsGy1G003190 vs. NCBI nr
Match: XP_011648566.1 (PREDICTED: transcription factor BIM1 [Cucumis sativus] >KGN63762.1 hypothetical protein Csa_1G015080 [Cucumis sativus]) HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
BLAST of CsGy1G003190 vs. NCBI nr
Match: XP_008453321.1 (PREDICTED: transcription factor BIM1 [Cucumis melo]) HSP 1 Score: 216.1 bits (549), Expect = 7.7e-53 Identity = 118/123 (95.93%), Postives = 119/123 (96.75%), Query Frame = 0
BLAST of CsGy1G003190 vs. NCBI nr
Match: XP_023516932.1 (transcription factor BIM1-like [Cucurbita pepo subsp. pepo] >XP_023516933.1 transcription factor BIM1-like [Cucurbita pepo subsp. pepo] >XP_023516934.1 transcription factor BIM1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 194.9 bits (494), Expect = 1.8e-46 Identity = 109/122 (89.34%), Postives = 111/122 (90.98%), Query Frame = 0
BLAST of CsGy1G003190 vs. NCBI nr
Match: XP_022921452.1 (transcription factor BIM1-like [Cucurbita moschata] >XP_022921453.1 transcription factor BIM1-like [Cucurbita moschata]) HSP 1 Score: 192.6 bits (488), Expect = 9.2e-46 Identity = 109/122 (89.34%), Postives = 111/122 (90.98%), Query Frame = 0
BLAST of CsGy1G003190 vs. NCBI nr
Match: XP_022987923.1 (transcription factor BIM1-like [Cucurbita maxima] >XP_022987924.1 transcription factor BIM1-like [Cucurbita maxima]) HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44 Identity = 107/122 (87.70%), Postives = 109/122 (89.34%), Query Frame = 0
BLAST of CsGy1G003190 vs. TAIR10
Match: AT5G08130.5 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 90.1 bits (222), Expect = 1.2e-18 Identity = 72/137 (52.55%), Postives = 89/137 (64.96%), Query Frame = 0
BLAST of CsGy1G003190 vs. Swiss-Prot
Match: sp|Q9LEZ3|BIM1_ARATH (Transcription factor BIM1 OS=Arabidopsis thaliana OX=3702 GN=BIM1 PE=1 SV=2) HSP 1 Score: 90.1 bits (222), Expect = 2.1e-17 Identity = 72/137 (52.55%), Postives = 89/137 (64.96%), Query Frame = 0
BLAST of CsGy1G003190 vs. TrEMBL
Match: tr|A0A0A0LSI8|A0A0A0LSI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015080 PE=4 SV=1) HSP 1 Score: 225.3 bits (573), Expect = 8.4e-56 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
BLAST of CsGy1G003190 vs. TrEMBL
Match: tr|A0A1S3BX43|A0A1S3BX43_CUCME (transcription factor BIM1 OS=Cucumis melo OX=3656 GN=LOC103494074 PE=4 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 5.1e-53 Identity = 118/123 (95.93%), Postives = 119/123 (96.75%), Query Frame = 0
BLAST of CsGy1G003190 vs. TrEMBL
Match: tr|A0A2P5BCC9|A0A2P5BCC9_PARAD (Basic helix-loop-helix transcription factor OS=Parasponia andersonii OX=3476 GN=PanBHLH6 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 1.9e-31 Identity = 87/125 (69.60%), Postives = 100/125 (80.00%), Query Frame = 0
BLAST of CsGy1G003190 vs. TrEMBL
Match: tr|A0A2P4MB75|A0A2P4MB75_QUESU (Transcription factor bim1 OS=Quercus suber OX=58331 GN=CFP56_62325 PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 4.2e-31 Identity = 85/128 (66.41%), Postives = 98/128 (76.56%), Query Frame = 0
BLAST of CsGy1G003190 vs. TrEMBL
Match: tr|W9RRJ1|W9RRJ1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016664 PE=4 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 7.2e-31 Identity = 89/120 (74.17%), Postives = 99/120 (82.50%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
|