CsGy1G002110 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G002110
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr1 : 1344135 .. 1344932 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCACCCCATATTGGTATTACTCTCACTAAGCATTTTACTTCTTCTACTTGTTGTGTGCTGCAGAGTGTCCACGGATCAGCTGCTGATCCATCTGATTTGAATTTGTCTTCTGAGGTTATGATTGCTGCCTTGTCGAAGAAGCTGCATGCAATAAAGGGGTTTTTGTTTTAGCTTTTAAGGTTTGTTTAAAACTTAAAAGCTTTGAAAGTGGAAGTCTACCTGAATTGATTAGTGTAAGGAAGCTTGGAATTGATGGAGTTTGATGGAATGTGGTTAAAAAGAGATGGCCATTGCTGGTCTGGCAATGGCAGTTGTCTTTTCTTGAGAGCAGCCATTAGAACTCGCATCACACTAGTGAAGGGACTCCCATCAGGTTCTAATTTGACGTAAATCCAGGAACCCATGAAGAAAAGTGCACAGGATAGGAACATGAGGAATGCAGGAATGGCTAATCCCCAAGCCCAGCTTACTTCAGTTTGGACATATACAATGATGGTTAAAGATATCATCATGGCAAATGTGAAGGTGAAGTAGTACCAGTTGAAGAAGCTGTTTATTCCTAACTTCCCGGAGGCTGTGTTTGGATTGAATTGGTCTGCTCCAAAAGCTAAGTTGCATGGTCTGATTCCACCAGCTCCAATTACAAGCAATCCTAATCCAAATAACAGAAATGCTATCTGCCATGACGTTGGCTCTAGGCAAGCCCCACCTGCACTGCCCTTTCCACAATCTGGTGGGTGCAATTTCTCAATTGTTGCTGTCAGTGTTAGCACAACCATCCCCTGCGAGTGA

mRNA sequence

ATGGCTGCACCCCATATTGGTATTACTCTCACTAAGCATTTTACTTCTTCTACTTGTTGTGTGCTGCAGAGTGTCCACGGATCAGCTGCTGATCCATCTGATTTGAATTTGTCTTCTGAGGAACCCATGAAGAAAAGTGCACAGGATAGGAACATGAGGAATGCAGGAATGGCTAATCCCCAAGCCCAGCTTACTTCAGTTTGGACATATACAATGATGGTTAAAGATATCATCATGGCAAATGTGAAGTACCAGTTGAAGAAGCTGTTTATTCCTAACTTCCCGGAGGCTGTGTTTGGATTGAATTGGTCTGCTCCAAAAGCTAAGTTGCATGGTCTGATTCCACCAGCTCCAATTACAAGCAATCCTAATCCAAATAACAGAAATGCTATCTGCCATGACGTTGGCTCTAGGCAAGCCCCACCTGCACTGCCCTTTCCACAATCTGGTGGGTGCAATTTCTCAATTGTTGCTGTCAGTGTTAGCACAACCATCCCCTGCGAGTGA

Coding sequence (CDS)

ATGGCTGCACCCCATATTGGTATTACTCTCACTAAGCATTTTACTTCTTCTACTTGTTGTGTGCTGCAGAGTGTCCACGGATCAGCTGCTGATCCATCTGATTTGAATTTGTCTTCTGAGGAACCCATGAAGAAAAGTGCACAGGATAGGAACATGAGGAATGCAGGAATGGCTAATCCCCAAGCCCAGCTTACTTCAGTTTGGACATATACAATGATGGTTAAAGATATCATCATGGCAAATGTGAAGTACCAGTTGAAGAAGCTGTTTATTCCTAACTTCCCGGAGGCTGTGTTTGGATTGAATTGGTCTGCTCCAAAAGCTAAGTTGCATGGTCTGATTCCACCAGCTCCAATTACAAGCAATCCTAATCCAAATAACAGAAATGCTATCTGCCATGACGTTGGCTCTAGGCAAGCCCCACCTGCACTGCCCTTTCCACAATCTGGTGGGTGCAATTTCTCAATTGTTGCTGTCAGTGTTAGCACAACCATCCCCTGCGAGTGA

Protein sequence

MAAPHIGITLTKHFTSSTCCVLQSVHGSAADPSDLNLSSEEPMKKSAQDRNMRNAGMANPQAQLTSVWTYTMMVKDIIMANVKYQLKKLFIPNFPEAVFGLNWSAPKAKLHGLIPPAPITSNPNPNNRNAICHDVGSRQAPPALPFPQSGGCNFSIVAVSVSTTIPCE
Homology
[Close]
BLAST of CsGy1G002110 vs. TrEMBL
Match: tr|A0A2P2IZ49|A0A2P2IZ49_RHIMU (Proton-dependent oligopeptide transport family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-06
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 114 IPPAPITSNPNPNNRNAICHDVGSRQAPPALPFPQSGGCNFSIVAVSVSTTIP 167
           +PPAPIT NP+P +RNAICH VGS Q   A   PQ  GC+  I AVSVS++IP
Sbjct: 1   MPPAPITRNPSPPSRNAICHGVGSGQL-LASAAPQCEGCSLEIAAVSVSSSIP 52

The following BLAST results are available for this feature:
BLAST of CsGy1G002110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsGy1G002110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G002110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G002110 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P2IZ49|A0A2P2IZ49_RHIMU1.5e-0660.38Proton-dependent oligopeptide transport family protein OS=Rhizophora mucronata O... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G002110.1CsGy1G002110.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..58

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G002110Lsi06G014890Bottle gourd (USVL1VR-Ls)cgyblsiB067
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G002110Melon (DHL92) v3.6.1cgybmedB043
CsGy1G002110Cucumber (Gy14) v2cgybcgybB006
CsGy1G002110Cucumber (Gy14) v2cgybcgybB029
CsGy1G002110Cucurbita maxima (Rimu)cgybcmaB004
CsGy1G002110Cucurbita maxima (Rimu)cgybcmaB040
CsGy1G002110Cucurbita maxima (Rimu)cgybcmaB066
CsGy1G002110Cucurbita maxima (Rimu)cgybcmaB103
CsGy1G002110Cucurbita maxima (Rimu)cgybcmaB130
CsGy1G002110Cucurbita moschata (Rifu)cgybcmoB005
CsGy1G002110Cucurbita moschata (Rifu)cgybcmoB028
CsGy1G002110Cucurbita moschata (Rifu)cgybcmoB062
CsGy1G002110Cucurbita moschata (Rifu)cgybcmoB093
CsGy1G002110Cucurbita moschata (Rifu)cgybcmoB119
CsGy1G002110Cucurbita pepo (Zucchini)cgybcpeB012
CsGy1G002110Cucurbita pepo (Zucchini)cgybcpeB014
CsGy1G002110Cucurbita pepo (Zucchini)cgybcpeB053
CsGy1G002110Cucurbita pepo (Zucchini)cgybcpeB061
CsGy1G002110Cucurbita pepo (Zucchini)cgybcpeB085
CsGy1G002110Cucurbita pepo (Zucchini)cgybcpeB108
CsGy1G002110Cucurbita pepo (Zucchini)cgybcpeB126
CsGy1G002110Cucumber (Chinese Long) v2cgybcuB001
CsGy1G002110Cucumber (Chinese Long) v2cgybcuB010
CsGy1G002110Bottle gourd (USVL1VR-Ls)cgyblsiB032
CsGy1G002110Bottle gourd (USVL1VR-Ls)cgyblsiB040
CsGy1G002110Melon (DHL92) v3.5.1cgybmeB007
CsGy1G002110Melon (DHL92) v3.5.1cgybmeB015
CsGy1G002110Melon (DHL92) v3.5.1cgybmeB048
CsGy1G002110Melon (DHL92) v3.6.1cgybmedB013
CsGy1G002110Melon (DHL92) v3.6.1cgybmedB005
CsGy1G002110Melon (DHL92) v3.6.1cgybmedB055
CsGy1G002110Watermelon (Charleston Gray)cgybwcgB003
CsGy1G002110Watermelon (Charleston Gray)cgybwcgB015
CsGy1G002110Watermelon (Charleston Gray)cgybwcgB060
CsGy1G002110Watermelon (Charleston Gray)cgybwcgB078
CsGy1G002110Watermelon (97103) v1cgybwmB004
CsGy1G002110Watermelon (97103) v1cgybwmB055
CsGy1G002110Watermelon (97103) v1cgybwmB094
CsGy1G002110Wild cucumber (PI 183967)cgybcpiB001
CsGy1G002110Wild cucumber (PI 183967)cgybcpiB009
CsGy1G002110Wild cucumber (PI 183967)cgybcpiB031
CsGy1G002110Silver-seed gourdcarcgybB0371
CsGy1G002110Silver-seed gourdcarcgybB0501
CsGy1G002110Silver-seed gourdcarcgybB0611
CsGy1G002110Silver-seed gourdcarcgybB0990
CsGy1G002110Cucumber (Chinese Long) v3cgybcucB002
CsGy1G002110Cucumber (Chinese Long) v3cgybcucB009
CsGy1G002110Cucumber (Chinese Long) v3cgybcucB039
CsGy1G002110Watermelon (97103) v2cgybwmbB076
CsGy1G002110Watermelon (97103) v2cgybwmbB005
CsGy1G002110Watermelon (97103) v2cgybwmbB058
CsGy1G002110Watermelon (97103) v2cgybwmbB088
CsGy1G002110Wax gourdcgybwgoB009
CsGy1G002110Wax gourdcgybwgoB057
CsGy1G002110Wax gourdcgybwgoB067
CsGy1G002110Wax gourdcgybwgoB092