Cp4.1LG20g08890 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g08890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG20 : 7027628 .. 7027840 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCAGCTCCTTCCACGGGCTTAAAGGCGAACATCTCTAGCCTTCCTCCGAGACGGGGTCGAATCAAGGCTCGTATTTTTGAGAGCCTTGTCAATTCAGTAGCCTTGATACTCTTCAAAGTCATTCGATACCTCGTCAGCGATGCTCGAATCCGCGCTGTTCCGCTGCCTCCTCCTCTTCGTTACGATGGAGGCTCCGTCGTCACGTGA

mRNA sequence

ATGGCTGCAGCTCCTTCCACGGGCTTAAAGGCGAACATCTCTAGCCTTCCTCCGAGACGGGGTCGAATCAAGGCTCGTATTTTTGAGAGCCTTGTCAATTCAGTAGCCTTGATACTCTTCAAAGTCATTCGATACCTCGTCAGCGATGCTCGAATCCGCGCTGTTCCGCTGCCTCCTCCTCTTCGTTACGATGGAGGCTCCGTCGTCACGTGA

Coding sequence (CDS)

ATGGCTGCAGCTCCTTCCACGGGCTTAAAGGCGAACATCTCTAGCCTTCCTCCGAGACGGGGTCGAATCAAGGCTCGTATTTTTGAGAGCCTTGTCAATTCAGTAGCCTTGATACTCTTCAAAGTCATTCGATACCTCGTCAGCGATGCTCGAATCCGCGCTGTTCCGCTGCCTCCTCCTCTTCGTTACGATGGAGGCTCCGTCGTCACGTGA

Protein sequence

MAAAPSTGLKANISSLPPRRGRIKARIFESLVNSVALILFKVIRYLVSDARIRAVPLPPPLRYDGGSVVT
Homology
[Close]
BLAST of Cp4.1LG20g08890 vs. TrEMBL
Match: A0A0A0LS06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-06
Identity = 41/79 (51.90%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 1  MAAAPSTGLKANISSLPPRRGRIKARIFESLVNSVAL-------ILFKVIRYLVSDARIR 60
          MAAA ST  K  I +LPP+RGRIKA+I ESLVNS AL       IL + IR LV+ AR  
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 AVP-----LPPPLRYDGGS 68
            P      PPPL + G S
Sbjct: 61 DAPPPYPAPPPPLIFHGVS 79

[Close]
BLAST of Cp4.1LG20g08890 vs. NCBI nr
Match: gi|700209619|gb|KGN64715.1| (hypothetical protein Csa_1G077160 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-06
Identity = 41/79 (51.90%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 1  MAAAPSTGLKANISSLPPRRGRIKARIFESLVNSVAL-------ILFKVIRYLVSDARIR 60
          MAAA ST  K  I +LPP+RGRIKA+I ESLVNS AL       IL + IR LV+ AR  
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 AVP-----LPPPLRYDGGS 68
            P      PPPL + G S
Sbjct: 61 DAPPPYPAPPPPLIFHGVS 79

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g08890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g08890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS06_CUCSA2.8e-0651.90Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077160 PE=4 SV=1[more]
BLAST of Cp4.1LG20g08890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g08890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209619|gb|KGN64715.1|4.0e-0651.90hypothetical protein Csa_1G077160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g08890.1Cp4.1LG20g08890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g08890MELO3C026843.2Melon (DHL92) v3.6.1cpemedB561
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g08890Silver-seed gourdcarcpeB0469
Cp4.1LG20g08890Silver-seed gourdcarcpeB0620
Cp4.1LG20g08890Silver-seed gourdcarcpeB1022
Cp4.1LG20g08890Cucumber (Chinese Long) v3cpecucB0651
Cp4.1LG20g08890Wax gourdcpewgoB0628
Cp4.1LG20g08890Wax gourdcpewgoB0636
Cp4.1LG20g08890Cucurbita pepo (Zucchini)cpecpeB296
Cp4.1LG20g08890Cucurbita pepo (Zucchini)cpecpeB386
Cp4.1LG20g08890Cucurbita pepo (Zucchini)cpecpeB388
Cp4.1LG20g08890Cucurbita pepo (Zucchini)cpecpeB413
Cp4.1LG20g08890Cucurbita pepo (Zucchini)cpecpeB432
Cp4.1LG20g08890Cucurbita pepo (Zucchini)cpecpeB439
Cp4.1LG20g08890Cucurbita maxima (Rimu)cmacpeB235
Cp4.1LG20g08890Cucurbita maxima (Rimu)cmacpeB483
Cp4.1LG20g08890Cucurbita moschata (Rifu)cmocpeB202
Cp4.1LG20g08890Cucurbita moschata (Rifu)cmocpeB441
Cp4.1LG20g08890Bottle gourd (USVL1VR-Ls)cpelsiB422
Cp4.1LG20g08890Watermelon (Charleston Gray)cpewcgB462
Cp4.1LG20g08890Watermelon (Charleston Gray)cpewcgB467
Cp4.1LG20g08890Watermelon (97103) v1cpewmB507
Cp4.1LG20g08890Melon (DHL92) v3.5.1cpemeB469
Cp4.1LG20g08890Melon (DHL92) v3.5.1cpemeB479
Cp4.1LG20g08890Cucumber (Gy14) v2cgybcpeB071
Cp4.1LG20g08890Cucumber (Gy14) v2cgybcpeB669
Cp4.1LG20g08890Cucumber (Gy14) v2cgybcpeB817