Cp4.1LG20g08430 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g08430
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG20 : 7457971 .. 7460000 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCCCTTCGTACTTATGGCCTTTACGCTACTACTACTGTGATGTGAGTGGTTCAAATTGATTTGGCCTTTCCCAATTATCTTGGCCGTAACTTGTTAAAGTTTTGGAATGATGATAAAAAGTTTCAAATAGGGAGTAATTAGGGTAGGTTTAAGCCCTTGCGACGACTTTTGGAAGGATGAAAGTGATTTACCCCATTAAATTCTTTTTCTAGGATTTAATATCCTACCATTTTAACTTAATATATATAGTAAAGAATTTAGAGAGAATTAGTTCAAACTATCTGACACCATACCTAGGATTTAACATCCAACCAGTTTAACCAAATGTAGCATGGTCAAATAGTTGTCTTGTGAGAATAGTCAAGGGTGTTCTAGCTCAAATACTCATGGACATAAAAGAAAAAGTGTGGAAAGCGGCCTAAGTAACAGATACACAATGAAGGAAATGGATGGCTTCAGCCGTTTTGTGTTATAGGAATGGCTCTTTGGCTGACTGTTTTTCTTGCTACCTTCTGTAATATTTAGCTTGAGAAAAAATAAGAGATCAGTAGTGATAGCAGGTGTTTTTCTTGGATACTATATGGGCATTGGACTAGACAGTTTGGCATATACTCAGGAAACTCAAGACACTAACCCACCTCCGACAAGAACATGAAAACATGGGGTGGGTCCAAATTTTGGTTTACAATTACAAAACTTGTTGTTAAGACATAGTGTTAGATCCCACATCGGTTGGAGAGGAGAATGAAGCATTCTTTATAAGGGTGTGGAAACCTCCCCCTAGTAGACGCGTTTTAAAAACCTTGAGGGAAGCCCAAAAGGTAAAACTCAAAGTGGATATCTGCTAGCGGTGAGCTTTGGGGCTAGGGAATAGTACAAAGTGTGGGAATGACAATGTCGAAGAATAGACAGATTGCTTGAGGAATGTGTGTTAGTGCTAATAAAGTGGCATTGTTTGATTTCATTAGCCTATCCAAAATTTCCTCTTCTCCACTTGAAATTAACAAAAACAATAGTTGTATTTCAATTATTCTAGATGTATTTGAGACTAAATGCTAACAGCTACATTTATTTTCTTTTGTCGATATCGTTTCTAGGTTCGTCACTCTACTGGACTACGGTTCTATGGGGAAAGGACGTGTTCGTGGCATGAAGTTAGGACCCACCCCCACCATAGTGTTCAAGTCTACACCACGTCAATTTACCGAGATTGAGATTCATAATGAGGCCAACAATATGGAAGATTACGAAAACGTAGATGCTAGACTTTCGATATTAGAGTTGAAAATGGCCAACATGCTCTCGATTTTGGAACAAAATGGTTTCATGCAATCCAATAATCTGACTGCTGCACATACAAATGGTGATTCGCCATACTGTATATACAAGAATCCTGGACGTGTCTGTGGCATGAGATTACAACCTACATCGACTCAAGTGTTCAGATCTATCTCACACCGTAATATTCGTAATGAGGCTCGTATGGATCAAAATGTAGATACTAGACTTTCAATATTAGAGGCTCAAATGACCAAGGTAGTTTCGATTTTACGACGAAATGGTCTGATGCAAGGCAACATATGAAGAGGACCACCACAGAAGTTTCAAGACATCACTAGGTATGACCCACCCTTTTCATGTTTTATAATGTTTTTATTTTGGAAGTAAATTTAATAATTGTTATTTATATATGATTATTTGTTATTAGGAACTGGGAGTTAACACACTAATGGTGCATCAAGTTTGTGAAGTGAATTCAAGATGTTTCATAATGTTCTAGCAGTCTGTAATGGTAAAACAATTTGATCTCCCAACTCTTAGGCTTAAATATTGTTATATTGGGATGATATGAAGTATGTATTAGAGCATTCTTCCATTTTCAACCTCTTGTGTTGAAATTTCTGGAGGTGGTAGTATTAGTGTATTAACAAAAAAAAAAAAAAAAAAAAANTTCAATGATATTAAAGAAAATAGTACCAAGCTAGTTCAGAGAGATGTCGATGGGGTGGGGACGACATCCCCAT

mRNA sequence

ATGACTGCCCTTCGTACTTATGGCCTTTACGCTACTACTACTGTGATGTTCGTCACTCTACTGGACTACGGTTCTATGGGGAAAGGACGTGTTCGTGGCATGAAGTTAGGACCCACCCCCACCATAGTGTTCAAGTCTACACCACGTCAATTTACCGAGATTGAGATTCATAATGAGGCCAACAATATGGAAGATTACGAAAACGTAGATGCTAGACTTTCGATATTAGAGTTGAAAATGGCCAACATGCTCTCGATTTTGGAACAAAATGGTTTCATGCAATCCAATAATCTGACTGCTGCACATACAAATGGTGATTCGCCATACTGTATATACAAGAATCCTGGACGTGTCTGTGGCATGAGATTACAACCTACATCGACTCAAGTGTTCAGATCTATCTCACACCGTAATATTCGTAATGAGGCTCGTATGGATCAAAATGTAGATACTAGACTTTCAATATTAGAGGCTCAAATGACCAAGGTAGTTTCGATTTTACGACGAAATGGTCTGATGCAAGGCAACATATGAAGAGGACCACCACAGAAGTTTCAAGACATCACTAGGAACTGGGAGTTAACACACTAATGGTGCATCAAGTTTGTGAAGTGAATTCAAGATGTTTCATAATGTTCTAGCAGTCTGTAATGGTAAAACAATTTGATCTCCCAACTCTTAGGCTTAAATATTGTTATATTGGGATGATATGAAGTATGTATTAGAGCATTCTTCCATTTTCAACCTCTTGTGTTGAAATTTCTGGAGGTGGTAGTATTAGTGTATTAACAAAAAAAAAAAAAAAAAAAAANTTCAATGATATTAAAGAAAATAGTACCAAGCTAGTTCAGAGAGATGTCGATGGGGTGGGGACGACATCCCCAT

Coding sequence (CDS)

ATGACTGCCCTTCGTACTTATGGCCTTTACGCTACTACTACTGTGATGTTCGTCACTCTACTGGACTACGGTTCTATGGGGAAAGGACGTGTTCGTGGCATGAAGTTAGGACCCACCCCCACCATAGTGTTCAAGTCTACACCACGTCAATTTACCGAGATTGAGATTCATAATGAGGCCAACAATATGGAAGATTACGAAAACGTAGATGCTAGACTTTCGATATTAGAGTTGAAAATGGCCAACATGCTCTCGATTTTGGAACAAAATGGTTTCATGCAATCCAATAATCTGACTGCTGCACATACAAATGGTGATTCGCCATACTGTATATACAAGAATCCTGGACGTGTCTGTGGCATGAGATTACAACCTACATCGACTCAAGTGTTCAGATCTATCTCACACCGTAATATTCGTAATGAGGCTCGTATGGATCAAAATGTAGATACTAGACTTTCAATATTAGAGGCTCAAATGACCAAGGTAGTTTCGATTTTACGACGAAATGGTCTGATGCAAGGCAACATATGA

Protein sequence

MTALRTYGLYATTTVMFVTLLDYGSMGKGRVRGMKLGPTPTIVFKSTPRQFTEIEIHNEANNMEDYENVDARLSILELKMANMLSILEQNGFMQSNNLTAAHTNGDSPYCIYKNPGRVCGMRLQPTSTQVFRSISHRNIRNEARMDQNVDTRLSILEAQMTKVVSILRRNGLMQGNI
Homology
[Close]
BLAST of Cp4.1LG20g08430 vs. TrEMBL
Match: A0A0A0LUW6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G523050 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 8.3e-71
Identity = 139/152 (91.45%), Postives = 143/152 (94.08%), Query Frame = 1 

Query: 26  MGKGRVRGMKLGPTPTIVFKSTPRQFTEIEIHNEANNMEDYENVDARLSILELKMANMLS 85
           MGKGRVRGMKLGPT TIVFKSTPRQFTE EIH+EAN +EDY+NVDARLSILELKMANM+S
Sbjct: 1   MGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEAN-LEDYQNVDARLSILELKMANMIS 60

Query: 86  ILEQNGFMQSNNLTAAHTNGDSPYCIYKNPGRVCGMRLQPTSTQVFRSISHRNIRNEARM 145
           ILEQNGFMQSNN TA HTNGD PYCIYKNPGRVC MRLQP STQVFRSISHRNIRNEARM
Sbjct: 61  ILEQNGFMQSNNPTATHTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHRNIRNEARM 120

Query: 146 DQNVDTRLSILEAQMTKVVSILRRNGLMQGNI 178
           DQNVDTRLSILE QMTKVVSILRRNGLMQGNI
Sbjct: 121 DQNVDTRLSILETQMTKVVSILRRNGLMQGNI 151

[Close]
BLAST of Cp4.1LG20g08430 vs. NCBI nr
Match: gi|700210634|gb|KGN65730.1| (hypothetical protein Csa_1G523050 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 1.2e-70
Identity = 139/152 (91.45%), Postives = 143/152 (94.08%), Query Frame = 1 

Query: 26  MGKGRVRGMKLGPTPTIVFKSTPRQFTEIEIHNEANNMEDYENVDARLSILELKMANMLS 85
           MGKGRVRGMKLGPT TIVFKSTPRQFTE EIH+EAN +EDY+NVDARLSILELKMANM+S
Sbjct: 1   MGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEAN-LEDYQNVDARLSILELKMANMIS 60

Query: 86  ILEQNGFMQSNNLTAAHTNGDSPYCIYKNPGRVCGMRLQPTSTQVFRSISHRNIRNEARM 145
           ILEQNGFMQSNN TA HTNGD PYCIYKNPGRVC MRLQP STQVFRSISHRNIRNEARM
Sbjct: 61  ILEQNGFMQSNNPTATHTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHRNIRNEARM 120

Query: 146 DQNVDTRLSILEAQMTKVVSILRRNGLMQGNI 178
           DQNVDTRLSILE QMTKVVSILRRNGLMQGNI
Sbjct: 121 DQNVDTRLSILETQMTKVVSILRRNGLMQGNI 151

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g08430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g08430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUW6_CUCSA8.3e-7191.45Uncharacterized protein OS=Cucumis sativus GN=Csa_1G523050 PE=4 SV=1[more]
BLAST of Cp4.1LG20g08430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g08430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210634|gb|KGN65730.1|1.2e-7091.45hypothetical protein Csa_1G523050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g08430.1Cp4.1LG20g08430.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g08430Cucsa.117830Cucumber (Gy14) v1cgycpeB0283
Cp4.1LG20g08430CmaCh13G001210Cucurbita maxima (Rimu)cmacpeB235
Cp4.1LG20g08430CmoCh13G001180Cucurbita moschata (Rifu)cmocpeB202
Cp4.1LG20g08430Cla008233Watermelon (97103) v1cpewmB507
Cp4.1LG20g08430Csa1G523050Cucumber (Chinese Long) v2cpecuB507
Cp4.1LG20g08430MELO3C020624Melon (DHL92) v3.5.1cpemeB479
Cp4.1LG20g08430ClCG03G001430Watermelon (Charleston Gray)cpewcgB467
Cp4.1LG20g08430CSPI01G23160Wild cucumber (PI 183967)cpecpiB507
Cp4.1LG20g08430Lsi02G013510Bottle gourd (USVL1VR-Ls)cpelsiB422
Cp4.1LG20g08430MELO3C020624.2Melon (DHL92) v3.6.1cpemedB561
Cp4.1LG20g08430CsaV3_1G034340Cucumber (Chinese Long) v3cpecucB0625
Cp4.1LG20g08430Bhi08G000509Wax gourdcpewgoB0650
Cp4.1LG20g08430Carg20651Silver-seed gourdcarcpeB0531
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g08430Wax gourdcpewgoB0628
Cp4.1LG20g08430Cucurbita pepo (Zucchini)cpecpeB296
Cp4.1LG20g08430Cucurbita pepo (Zucchini)cpecpeB386
Cp4.1LG20g08430Cucurbita pepo (Zucchini)cpecpeB388
Cp4.1LG20g08430Cucurbita pepo (Zucchini)cpecpeB432
Cp4.1LG20g08430Cucurbita pepo (Zucchini)cpecpeB439
Cp4.1LG20g08430Cucurbita pepo (Zucchini)cpecpeB444
Cp4.1LG20g08430Cucurbita pepo (Zucchini)cpecpeB447
Cp4.1LG20g08430Cucumber (Gy14) v1cgycpeB0376
Cp4.1LG20g08430Cucurbita maxima (Rimu)cmacpeB483
Cp4.1LG20g08430Cucurbita maxima (Rimu)cmacpeB636
Cp4.1LG20g08430Cucurbita moschata (Rifu)cmocpeB441
Cp4.1LG20g08430Cucurbita moschata (Rifu)cmocpeB586
Cp4.1LG20g08430Bottle gourd (USVL1VR-Ls)cpelsiB412
Cp4.1LG20g08430Bottle gourd (USVL1VR-Ls)cpelsiB414
Cp4.1LG20g08430Watermelon (Charleston Gray)cpewcgB462
Cp4.1LG20g08430Watermelon (97103) v1cpewmB526
Cp4.1LG20g08430Melon (DHL92) v3.5.1cpemeB468
Cp4.1LG20g08430Cucumber (Gy14) v2cgybcpeB071
Cp4.1LG20g08430Cucumber (Gy14) v2cgybcpeB536
Cp4.1LG20g08430Cucumber (Gy14) v2cgybcpeB669
Cp4.1LG20g08430Cucumber (Gy14) v2cgybcpeB817
Cp4.1LG20g08430Cucumber (Gy14) v2cgybcpeB818
Cp4.1LG20g08430Melon (DHL92) v3.6.1cpemedB551
Cp4.1LG20g08430Melon (DHL92) v3.6.1cpemedB571
Cp4.1LG20g08430Silver-seed gourdcarcpeB0228
Cp4.1LG20g08430Silver-seed gourdcarcpeB0469
Cp4.1LG20g08430Silver-seed gourdcarcpeB0620
Cp4.1LG20g08430Cucumber (Chinese Long) v3cpecucB0645
Cp4.1LG20g08430Cucumber (Chinese Long) v3cpecucB0653