Cp4.1LG20g07070 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG20g07070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEpidermal patterning factor-like protein 6
LocationCp4.1LG20 : 5881508 .. 5882398 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTAAATGAAGAGGGAGGTGGTGACAGCTGAAAATTTAAATTGTAAGTTTAAAAAAGAGGTAGTAGCAGTTGGTCGTATGCTGTGGCTAGCGGCCTCCATAGTAAAAAGAATACACATAAAAGGATAGAGGATTGATAGAGGAAGGAGATGGGTCGGCCACCTACTCGAATTCGTTCATCACTTCGATAGATCTTGGGACGATTGGATAGTGACATACGCATGTGCCACAAGGTAGCTCGCTTAGACCACAGGGTCTAGAGGTGGTGGAGAGTTGACACCATGTCATCCCTTAAGGTACATTTTCAGACATTTCCAATCATTTTTGGGTAGACGTCATTATTAACTAAGGGAGAGAAAACCAATGGAATAAAAAAATTTAAAATAAAAGATAAATAATAGGAGAAAATGTCCTTTTTTAAAAAATTTCCTTCCCTCTTTATAGCATATTTTAAACCTAAACCTAAACCCATCTTCTTCTTATTGTTTTTCATTATCTTCATATTGTCCTCGGACAACACTAGACGTTGCTCATCTACTGAATCCATGCACATATCTAGGTAAATTTATTTTAGTTCCACTATTATAATGGCTTATTCATCACCTTCCTCATATATTTTCTTACAAATACCTATTTTTGCACCCAAAAAATTTAATGCTAATATACTATGCAAGCCCATAACTAATCATGAAGATTAGGAGTTGACCTTGCCAAGAAGAGGATTGGGTGGGCCGGGATCGTCGCCGCCAAACTGCAGCTCAAAGTGTGGGAGCTGCACGCCCTGCACTACTGTTCTTGTGTCGGTGCTGCCGGGACCTCCAGGCATCGATGATGATTTCCCGGAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA

mRNA sequence

ATGGTTGAGTTGACCTTGCCAAGAAGAGGATTGGGTGGGCCGGGATCGTCGCCGCCAAACTGCAGCTCAAAGTGTGGGAGCTGCACGCCCTGCACTACTGTTCTTGTGTCGGTGCTGCCGGGACCTCCAGGCATCGATGATGATTTCCCGGAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA

Coding sequence (CDS)

ATGGTTGAGTTGACCTTGCCAAGAAGAGGATTGGGTGGGCCGGGATCGTCGCCGCCAAACTGCAGCTCAAAGTGTGGGAGCTGCACGCCCTGCACTACTGTTCTTGTGTCGGTGCTGCCGGGACCTCCAGGCATCGATGATGATTTCCCGGAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA

Protein sequence

MVELTLPRRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYMP
BLAST of Cp4.1LG20g07070 vs. Swiss-Prot
Match: EPFL6_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.6e-17
Identity = 39/57 (68.42%), Postives = 41/57 (71.93%), Query Frame = 1

Query: 8   RRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYMP 65
           RR L G GSSPP CSSKCG CTPC  V V V PG P   + +PE WRCKCGNKLYMP
Sbjct: 100 RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

BLAST of Cp4.1LG20g07070 vs. Swiss-Prot
Match: EPFL4_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.7e-15
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1

Query: 12  GGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYMP 65
           GGPGSSPP C SKCG C PC  V V + PG     + +PE WRCKCGNKL+MP
Sbjct: 57  GGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

BLAST of Cp4.1LG20g07070 vs. Swiss-Prot
Match: EPFL5_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-13
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1

Query: 8   RRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYMP 65
           ++ LGGPGS PP C  KCG C PC  V V + PG     + +PE WRCKCGNKL+MP
Sbjct: 51  QKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

BLAST of Cp4.1LG20g07070 vs. Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-08
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 1

Query: 16  SSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYMP 65
           SSPPNC +KC  C PC   L+ V P  P  +D +P+ W C C NK+Y P
Sbjct: 461 SSPPNCKNKCKGCQPCKPKLIIVHPNQP--EDYYPQRWVCSCHNKIYNP 507

BLAST of Cp4.1LG20g07070 vs. Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-08
Identity = 24/49 (48.98%), Postives = 29/49 (59.18%), Query Frame = 1

Query: 16  SSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYMP 65
           SSPPNC +KC  C PC   L+ V P  P   D +P+ W C C NK+Y P
Sbjct: 468 SSPPNCKNKCKGCQPCKPKLIIVHPNKP--QDYYPQKWVCSCHNKIYNP 514

BLAST of Cp4.1LG20g07070 vs. TrEMBL
Match: A0A0A0LXR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533610 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-20
Identity = 44/61 (72.13%), Postives = 48/61 (78.69%), Query Frame = 1

Query: 4   LTLPRRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYM 63
           + LPRRGLGGPGSSPP C+SKCG CTPCT V V V PG P   + +PE WRCKCGNKLYM
Sbjct: 85  MRLPRRGLGGPGSSPPRCASKCGKCTPCTAVHVPVPPGTPVTAEYYPEAWRCKCGNKLYM 144

Query: 64  P 65
           P
Sbjct: 145 P 145

BLAST of Cp4.1LG20g07070 vs. TrEMBL
Match: A0A151U159_CAJCA (Polygalacturonase OS=Cajanus cajan GN=KK1_005584 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-18
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 1

Query: 1   MVELTLPRRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNK 60
           M  +  PRR LGGPGSSPP C+SKCG CTPC  V V V PG P   + +PE WRCKCGNK
Sbjct: 50  MSSMVRPRRLLGGPGSSPPRCTSKCGKCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNK 109

Query: 61  LYMP 65
           LYMP
Sbjct: 110 LYMP 113

BLAST of Cp4.1LG20g07070 vs. TrEMBL
Match: A0A061GXY6_THECC (Allergen-related OS=Theobroma cacao GN=TCM_042272 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.0e-18
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 1

Query: 4   LTLPRRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYM 63
           LTL RR L GPGSSPP C+SKCG+CTPC  V V V PG P   + +PE WRCKCGNKLYM
Sbjct: 83  LTLARRFLSGPGSSPPRCTSKCGNCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYM 142

Query: 64  P 65
           P
Sbjct: 143 P 143

BLAST of Cp4.1LG20g07070 vs. TrEMBL
Match: A0A0D2MH03_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G152400 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.5e-18
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 1

Query: 5   TLPRRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYMP 64
           +LPRR L GPGSSPP C+SKCG CTPC  V V V PG P   + +PE WRCKCGNKLYMP
Sbjct: 75  SLPRRVLSGPGSSPPRCASKCGKCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 134

BLAST of Cp4.1LG20g07070 vs. TrEMBL
Match: A0A0B0MS25_GOSAR (Epidermal patterning factor-like protein 6 OS=Gossypium arboreum GN=F383_21220 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.5e-18
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 1

Query: 5   TLPRRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYMP 64
           +LPRR L GPGSSPP C+SKCG CTPC  V V V PG P   + +PE WRCKCGNKLYMP
Sbjct: 76  SLPRRVLSGPGSSPPRCASKCGKCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 135

BLAST of Cp4.1LG20g07070 vs. TAIR10
Match: AT2G30370.1 (AT2G30370.1 allergen-related)

HSP 1 Score: 88.2 bits (217), Expect = 2.0e-18
Identity = 39/57 (68.42%), Postives = 41/57 (71.93%), Query Frame = 1

Query: 8   RRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYMP 65
           RR L G GSSPP CSSKCG CTPC  V V V PG P   + +PE WRCKCGNKLYMP
Sbjct: 174 RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 230

BLAST of Cp4.1LG20g07070 vs. TAIR10
Match: AT4G14723.1 (AT4G14723.1 BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1))

HSP 1 Score: 80.1 bits (196), Expect = 5.5e-16
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1

Query: 12  GGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYMP 65
           GGPGSSPP C SKCG C PC  V V + PG     + +PE WRCKCGNKL+MP
Sbjct: 57  GGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

BLAST of Cp4.1LG20g07070 vs. TAIR10
Match: AT3G22820.1 (AT3G22820.1 allergen-related)

HSP 1 Score: 76.6 bits (187), Expect = 6.0e-15
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1

Query: 8   RRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYMP 65
           ++ LGGPGS PP C  KCG C PC  V V + PG     + +PE WRCKCGNKL+MP
Sbjct: 51  QKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

BLAST of Cp4.1LG20g07070 vs. TAIR10
Match: AT2G20875.1 (AT2G20875.1 epidermal patterning factor 1)

HSP 1 Score: 48.1 bits (113), Expect = 2.3e-06
Identity = 20/48 (41.67%), Postives = 27/48 (56.25%), Query Frame = 1

Query: 15  GSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLY 63
           GS  P+CS  CGSC+PC  V+VS +       +  P  ++C C NK Y
Sbjct: 54  GSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSY 101

BLAST of Cp4.1LG20g07070 vs. NCBI nr
Match: gi|778661835|ref|XP_011658830.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-20
Identity = 44/61 (72.13%), Postives = 48/61 (78.69%), Query Frame = 1

Query: 4   LTLPRRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYM 63
           + LPRRGLGGPGSSPP C+SKCG CTPCT V V V PG P   + +PE WRCKCGNKLYM
Sbjct: 85  MRLPRRGLGGPGSSPPRCASKCGKCTPCTAVHVPVPPGTPVTAEYYPEAWRCKCGNKLYM 144

Query: 64  P 65
           P
Sbjct: 145 P 145

BLAST of Cp4.1LG20g07070 vs. NCBI nr
Match: gi|659114962|ref|XP_008457315.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-20
Identity = 44/61 (72.13%), Postives = 48/61 (78.69%), Query Frame = 1

Query: 4   LTLPRRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNKLYM 63
           + LPRRGLGGPGSSPP C+SKCG CTPCT V V V PG P   + +PE WRCKCGNKLYM
Sbjct: 81  MRLPRRGLGGPGSSPPRCTSKCGKCTPCTAVHVPVPPGTPVTAEYYPEAWRCKCGNKLYM 140

Query: 64  P 65
           P
Sbjct: 141 P 141

BLAST of Cp4.1LG20g07070 vs. NCBI nr
Match: gi|694431848|ref|XP_009343315.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Pyrus x bretschneideri])

HSP 1 Score: 101.7 bits (252), Expect = 5.0e-19
Identity = 43/64 (67.19%), Postives = 49/64 (76.56%), Query Frame = 1

Query: 1  MVELTLPRRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNK 60
          M+ L+L RR L GPGSSPP C+SKCG CTPC  V VSV PG P + + +PE WRCKCGNK
Sbjct: 14 MMTLSLARRYLSGPGSSPPRCTSKCGRCTPCKPVHVSVPPGTPVMSEYYPEAWRCKCGNK 73

Query: 61 LYMP 65
          LYMP
Sbjct: 74 LYMP 77

BLAST of Cp4.1LG20g07070 vs. NCBI nr
Match: gi|694398360|ref|XP_009374360.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 [Pyrus x bretschneideri])

HSP 1 Score: 100.9 bits (250), Expect = 8.5e-19
Identity = 43/64 (67.19%), Postives = 49/64 (76.56%), Query Frame = 1

Query: 1   MVELTLPRRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNK 60
           M+ L+L RR L GPGSSPP C+SKCG CTPC  V VSV PG P + + +PE WRCKCGNK
Sbjct: 64  MMTLSLARRYLSGPGSSPPRCTSKCGRCTPCKPVHVSVPPGTPVMAEYYPEAWRCKCGNK 123

Query: 61  LYMP 65
           LYMP
Sbjct: 124 LYMP 127

BLAST of Cp4.1LG20g07070 vs. NCBI nr
Match: gi|694310757|ref|XP_009354667.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 [Pyrus x bretschneideri])

HSP 1 Score: 100.9 bits (250), Expect = 8.5e-19
Identity = 43/64 (67.19%), Postives = 49/64 (76.56%), Query Frame = 1

Query: 1   MVELTLPRRGLGGPGSSPPNCSSKCGSCTPCTTVLVSVLPGPPGIDDDFPEVWRCKCGNK 60
           M+ L+L RR L GPGSSPP C+SKCG CTPC  V VSV PG P + + +PE WRCKCGNK
Sbjct: 64  MMPLSLARRYLSGPGSSPPRCTSKCGRCTPCKPVHVSVPPGTPVMAEYYPEAWRCKCGNK 123

Query: 61  LYMP 65
           LYMP
Sbjct: 124 LYMP 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EPFL6_ARATH3.6e-1768.42EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana GN=EPFL6 PE=1... [more]
EPFL4_ARATH9.7e-1562.26EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana GN=EPFL4 PE=1... [more]
EPFL5_ARATH1.1e-1356.14EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana GN=EPFL5 PE=1... [more]
PGLR2_JUNAS1.8e-0848.98Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1[more]
PGLR2_CHAOB2.3e-0848.98Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LXR9_CUCSA1.8e-2072.13Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533610 PE=4 SV=1[more]
A0A151U159_CAJCA1.7e-1865.63Polygalacturonase OS=Cajanus cajan GN=KK1_005584 PE=4 SV=1[more]
A0A061GXY6_THECC5.0e-1868.85Allergen-related OS=Theobroma cacao GN=TCM_042272 PE=4 SV=1[more]
A0A0D2MH03_GOSRA8.5e-1868.33Uncharacterized protein OS=Gossypium raimondii GN=B456_003G152400 PE=4 SV=1[more]
A0A0B0MS25_GOSAR8.5e-1868.33Epidermal patterning factor-like protein 6 OS=Gossypium arboreum GN=F383_21220 P... [more]
Match NameE-valueIdentityDescription
AT2G30370.12.0e-1868.42 allergen-related[more]
AT4G14723.15.5e-1662.26 BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:A... [more]
AT3G22820.16.0e-1556.14 allergen-related[more]
AT2G20875.12.3e-0641.67 epidermal patterning factor 1[more]
Match NameE-valueIdentityDescription
gi|778661835|ref|XP_011658830.1|2.6e-2072.13PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 [Cucumis sativus][more]
gi|659114962|ref|XP_008457315.1|2.6e-2072.13PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 [Cucumis melo][more]
gi|694431848|ref|XP_009343315.1|5.0e-1967.19PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Pyrus x bretschn... [more]
gi|694398360|ref|XP_009374360.1|8.5e-1967.19PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 [Pyrus x bretschneideri][more]
gi|694310757|ref|XP_009354667.1|8.5e-1967.19PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g07070.1Cp4.1LG20g07070.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33109FAMILY NOT NAMEDcoord: 8..64
score: 3.2
NoneNo IPR availablePANTHERPTHR33109:SF2EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 6coord: 8..64
score: 3.2
NoneNo IPR availablePFAMPF17181EPFcoord: 14..64
score: 1.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None