Cp4.1LG20g03610 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g03610
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAutophagy-related protein
LocationCp4.1LG20 : 2021263 .. 2023494 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGGGATTGAGAAGAAAGCCAGGTACGCTTCTTCGTCTTCAAGTCTTCGGCCGTTATTTTATGATCGATCTCTCGCCAACTTGATTTTCCCGTCTCTTTCGCCATTTTCATTTAATTGGCTTTGCCAATCGTTATCTCAGGCACTGATTGCGTCGATTCTGCCTCGGTATGTCGTTTACAGAACTGTTCTTCATGGTTATTCGTATTAAGTTTTGTTCAGTCGTTTTTTTATTTTGTTTTCGTTGAATTTCTGAGTATCCAATTTTGAGTTGTAATGATCTGATGTTTGAATTCGCAGAAAAAAATTGAGATTCGCCATGGCTAAAAGCTCGTTCAAGCTCGAACACCCTCTAGGTTTTCTTTTGACAATTTTGACTCTTTTGACCATTTCCTGAACTTTCGTTTTCCCCCTTGTGATGTGTCATGTCAGTTTTCTTGTACTTTTGATGCTTAATTGATTACTTGCGTTTTAGTTTAAGTTTTTGGGTTGTTGATGTTTGATGCTTTATCCATTTCTGGGATTTTTTCCCCTTGCGCTCATGACTGAAGACCCCTCCCACGTCGGTATTAAATTAGGACTATTCTTATGATTGCGAAAGGGTTTCTTTGAACTCTGTAATTGAGGATTCTTATGGTGAAATCATGTTTCCGTCGTACGTTTGGTTCTCCGGGGTTGATCGAAAGACCAGTCTTTTGATTTTTGAGCTCTCACAGTCTCCTTTTGATATTGTTTCAGTGCGACAATTGATCAAAGTCACTTCCACCCCATTTTTTGCATCTTCTTTATTTTGTTCTAAAACTATTCTCCTATATTCTAGAAAGGAGACAAGCTGAAGCTGTTCGCATCAGGGAGAAATACCCGGATAGGATTCCCGTAAGAATGTTGAACATTCATGATACAGTGTTAAACACGGCGTGCACTCCAATTTTTCTCTGTTAATATGATTTAATAACTGCAGGTGATTGTGGAGAAAGCAGAAAGGAGTGACATTCCTGACATTGATAAGAAGAAGTAAGTTCCATAATGACTTGATTATACATAAACCAGTTCAAATTGGACTTCTTTACTGAAATGAGCTGGTATGAATCTGGAATGGGAGGCCTCTAATTGAGTTATAACTCCAGAACTTGGTTTACATGATTTGGTGCTGGCTTGTTCTTTCATTTCCATAAAAATTGCGTATCGAGATGGTACATGGTATGGTCTTGATTGTCGACAAATATTAAGTGTCGTGGTGATGGTTTATTTTTGTTCTAGTGTTGATAGGAAGAACATACACGGTGGGCAACTGTGAGATCCCACAGGTTGGGGAGGAGAACGAAACATTCTTTATAACTAGCAGACGCATTTTAAGAACCTCGAGGGAAAGCCCAAAGAGGACAATATTTGCTAATAGTGGACTCGGGCCGTTACGAATTACCTATTACTTTTGGCTTTTGGCTGTTCTAGTTCGATCGAACATAATTGGGTGTTGGGTGGGGGCAAAATATAACACTCTAATTGTATTATCTAATTCTCTCAGGTACCTCGTCCCTGCTGATCTGACTGTTGGGCAGTTTGTTTATGTTATCCGGAAAAGGATTAAGCTTAGCTCTGAGAAGGCGATTTTCATCTTTATAAAAAACACACTACCTCCAACTGGTTAGCTGGATTTGTGTTTCTTTTCATATATATTTCACAGCGTAGCCTGAAGAATTTGCATTTGTTTGATATTATCTTATCTGTTCTATTGCCACAGCTGGTTTGATGTCAGCAATCTATGATGAAAACAAGGATGAAGATGGTTTTCTTTACATGACTTACAGTGGGGAGAACACCTTTGGATTCTGATTGCTTCAAATCAAAGTTCATCTCCCTGTAAATAGAGCTTAAAAAGCTGTAAATTCTCCCTGCCTTCTTTCTTTCCCTTTGCCAGTAATGTTAGTGCCATTTAAGACTTAATTTAAGTGTTGGATTCTGGATTTGTTGGTGTTCTCCCCCGCCCCAACTAGAAACAAACGTGGGTGTCTGCTTGGTGAGACTCCATACGTCCAGATTCACCGGTGTCTATTCCATGGAATTATCAGATGTTTCTGGAAATTTTATTTTCACGTTTGCTTCATCAAAATGTTAGCGACATTTAATCATTCACGATAATCTAGTGTTTTAAGTCGATGAGGACGGGAATTTGAACCGAATTGTAGTATTCAATGACGACTAATCGATTAAACTTATTGCACGTTGATTCTCT

mRNA sequence

GGGGGGATTGAGAAGAAAGCCAGGTACGCTTCTTCGTCTTCAAGTCTTCGGCCGTTATTTTATGATCGATCTCTCGCCAACTTGATTTTCCCGTCTCTTTCGCCATTTTCATTTAATTGGCTTTGCCAATCGTTATCTCAGGCACTGATTGCGTCGATTCTGCCTCGAAAAAAATTGAGATTCGCCATGGCTAAAAGCTCGTTCAAGCTCGAACACCCTCTAGAAAGGAGACAAGCTGAAGCTGTTCGCATCAGGGAGAAATACCCGGATAGGATTCCCGTGATTGTGGAGAAAGCAGAAAGGAGTGACATTCCTGACATTGATAAGAAGAAGTACCTCGTCCCTGCTGATCTGACTGTTGGGCAGTTTGTTTATGTTATCCGGAAAAGGATTAAGCTTAGCTCTGAGAAGGCGATTTTCATCTTTATAAAAAACACACTACCTCCAACTGCTGGTTTGATGTCAGCAATCTATGATGAAAACAAGGATGAAGATGGTTTTCTTTACATGACTTACAGTGGGGAGAACACCTTTGGATTCTGATTGCTTCAAATCAAAGTTCATCTCCCTGTAAATAGAGCTTAAAAAGCTGTAAATTCTCCCTGCCTTCTTTCTTTCCCTTTGCCAGTAATGTTAGTGCCATTTAAGACTTAATTTAAGTGTTGGATTCTGGATTTGTTGGTGTTCTCCCCCGCCCCAACTAGAAACAAACGTGGGTGTCTGCTTGGTGAGACTCCATACGTCCAGATTCACCGGTGTCTATTCCATGGAATTATCAGATGTTTCTGGAAATTTTATTTTCACGTTTGCTTCATCAAAATGTTAGCGACATTTAATCATTCACGATAATCTAGTGTTTTAAGTCGATGAGGACGGGAATTTGAACCGAATTGTAGTATTCAATGACGACTAATCGATTAAACTTATTGCACGTTGATTCTCT

Coding sequence (CDS)

GGGGGGATTGAGAAGAAAGCCAGGTACGCTTCTTCGTCTTCAAGTCTTCGGCCGTTATTTTATGATCGATCTCTCGCCAACTTGATTTTCCCGTCTCTTTCGCCATTTTCATTTAATTGGCTTTGCCAATCGTTATCTCAGGCACTGATTGCGTCGATTCTGCCTCGAAAAAAATTGAGATTCGCCATGGCTAAAAGCTCGTTCAAGCTCGAACACCCTCTAGAAAGGAGACAAGCTGAAGCTGTTCGCATCAGGGAGAAATACCCGGATAGGATTCCCGTGATTGTGGAGAAAGCAGAAAGGAGTGACATTCCTGACATTGATAAGAAGAAGTACCTCGTCCCTGCTGATCTGACTGTTGGGCAGTTTGTTTATGTTATCCGGAAAAGGATTAAGCTTAGCTCTGAGAAGGCGATTTTCATCTTTATAAAAAACACACTACCTCCAACTGCTGGTTTGATGTCAGCAATCTATGATGAAAACAAGGATGAAGATGGTTTTCTTTACATGACTTACAGTGGGGAGAACACCTTTGGATTCTGA

Protein sequence

GGIEKKARYASSSSSLRPLFYDRSLANLIFPSLSPFSFNWLCQSLSQALIASILPRKKLRFAMAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFGF
Homology
[Close]
BLAST of Cp4.1LG20g03610 vs. Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-56
Identity = 110/117 (94.02%), Postives = 115/117 (98.29%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MA+SSFKLEHPLERRQAEA RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFG 180
           FVYV+RKRIKLS+EKAIFIF+KNTLPPTA LMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]
BLAST of Cp4.1LG20g03610 vs. Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-56
Identity = 110/117 (94.02%), Postives = 115/117 (98.29%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MA+SSFKLEHPLERRQAEA RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFG 180
           FVYV+RKRIKLS+EKAIFIF+KNTLPPTA LMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]
BLAST of Cp4.1LG20g03610 vs. Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-54
Identity = 104/117 (88.89%), Postives = 113/117 (96.58%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MA SSFKLEHPLERRQ E+ RIREKYPDRIPVIVE+AERSD+P+IDKKKYLVPADLTVGQ
Sbjct: 1   MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFG 180
           FVYV+RKRIKLS+EKAIF+F+KNTLPPTA +MSAIYDENKDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117

[Close]
BLAST of Cp4.1LG20g03610 vs. Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-54
Identity = 108/117 (92.31%), Postives = 112/117 (95.73%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MAKSSFKL+H LERRQAEA RIREKY DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFG 180
           FVYV+RKRIKLS EKAIFIF+KNTLPPTA LMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]
BLAST of Cp4.1LG20g03610 vs. Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-54
Identity = 108/117 (92.31%), Postives = 112/117 (95.73%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MAKSSFKL+H LERRQAEA RIREKY DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFG 180
           FVYV+RKRIKLS EKAIFIF+KNTLPPTA LMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]
BLAST of Cp4.1LG20g03610 vs. TrEMBL
Match: E5GC57_CUCME (Autophagy-related protein OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.5e-56
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MAKSSFKLEHPLERRQAEA RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFGF 181
           FVYV+RKRIKLSSEKAIFIFIKNTLPPTA LMS+IY+ENKDEDGFLYMTYSGENTFGF
Sbjct: 61  FVYVVRKRIKLSSEKAIFIFIKNTLPPTAALMSSIYEENKDEDGFLYMTYSGENTFGF 118

[Close]
BLAST of Cp4.1LG20g03610 vs. TrEMBL
Match: A0A0A0LU79_CUCSA (Autophagy-related protein OS=Cucumis sativus GN=Csa_1G062890 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.5e-56
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MAKSSFKLEHPLERRQAEA RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFGF 181
           FVYV+RKRIKLSSEKAIFIFIKNTLPPTA LMS+IY+ENKDEDGFLYMTYSGENTFGF
Sbjct: 61  FVYVVRKRIKLSSEKAIFIFIKNTLPPTAALMSSIYEENKDEDGFLYMTYSGENTFGF 118

[Close]
BLAST of Cp4.1LG20g03610 vs. TrEMBL
Match: A0A0E0LS36_ORYPU (Autophagy-related protein OS=Oryza punctata PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.2e-55
Identity = 115/136 (84.56%), Postives = 122/136 (89.71%), Query Frame = 1 

Query: 44  SLSQALIASILPRKKLRFAMAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSD 103
           S + A I   + RK     MA+SSFKLEHPLERRQAEA RIREKYPDRIPVIVEKAERSD
Sbjct: 155 SSAMAFIRGSVGRKARSRVMARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSD 214

Query: 104 IPDIDKKKYLVPADLTVGQFVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKD 163
           IPDIDKKKYLVPADLTVGQFVYV+RKRIKLS+EKAIFIF+KNTLPPTA LMSAIY+ENKD
Sbjct: 215 IPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKD 274

Query: 164 EDGFLYMTYSGENTFG 180
           EDGFLYMTYSGENTFG
Sbjct: 275 EDGFLYMTYSGENTFG 290

[Close]
BLAST of Cp4.1LG20g03610 vs. TrEMBL
Match: A0A068U7C0_COFCA (Autophagy-related protein OS=Coffea canephora GN=GSCOC_T00017785001 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.9e-55
Identity = 110/118 (93.22%), Postives = 116/118 (98.31%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MAKSSFKLEHPLERRQAE+ RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQAESSRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFGF 181
           FVYV+RKRIKLS+EKAIF+F+KNTLPPTA LMSAIY+ENKDEDGFLYMTYSGENTFGF
Sbjct: 61  FVYVVRKRIKLSAEKAIFVFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGF 118

[Close]
BLAST of Cp4.1LG20g03610 vs. TrEMBL
Match: J3MR15_ORYBR (Autophagy-related protein OS=Oryza brachyantha PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-54
Identity = 110/117 (94.02%), Postives = 115/117 (98.29%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MA+SSFKLEHPLERRQAEA RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFG 180
           FVYV+RKRIKLS+EKAIFIF+KNTLPPTA LMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]
BLAST of Cp4.1LG20g03610 vs. TAIR10
Match: AT1G62040.2 (AT1G62040.2 Ubiquitin-like superfamily protein)

HSP 1 Score: 215.7 bits (548), Expect = 2.3e-56
Identity = 105/118 (88.98%), Postives = 114/118 (96.61%), Query Frame = 1 

Query: 62  AMAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVG 121
           AMA SSFKLEHPLERRQ E+ RIREKYPDRIPVIVE+AERSD+P+IDKKKYLVPADLTVG
Sbjct: 14  AMANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVG 73

Query: 122 QFVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFG 180
           QFVYV+RKRIKLS+EKAIF+F+KNTLPPTA +MSAIYDENKDEDGFLYMTYSGENTFG
Sbjct: 74  QFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 131

[Close]
BLAST of Cp4.1LG20g03610 vs. TAIR10
Match: AT4G21980.2 (AT4G21980.2 Ubiquitin-like superfamily protein)

HSP 1 Score: 205.3 bits (521), Expect = 3.2e-53
Identity = 100/120 (83.33%), Postives = 112/120 (93.33%), Query Frame = 1 

Query: 60  RFAMAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLT 119
           R AMAKSSFK+ +PLE R +E+ RIREKYPDRIPVIVEKA +SD+PDIDKKKYLVPADLT
Sbjct: 13  RIAMAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLT 72

Query: 120 VGQFVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFG 179
           VGQFVYV+RKRIKL +EKAIF+F+KNTLPPTA LMSAIY+E+KDEDGFLYMTYSGENTFG
Sbjct: 73  VGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 132

[Close]
BLAST of Cp4.1LG20g03610 vs. TAIR10
Match: AT4G16520.1 (AT4G16520.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 1.7e-51
Identity = 98/118 (83.05%), Postives = 108/118 (91.53%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MAKSSFK EH LE+R+AEA RIREKYPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFGF 181
           FVYVIRKRIKLS+EKAIFIF+ N LPP   LMS++Y+E KD+DGFLY+TYSGENTFGF
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGF 118

[Close]
BLAST of Cp4.1LG20g03610 vs. TAIR10
Match: AT4G04620.1 (AT4G04620.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-50
Identity = 94/117 (80.34%), Postives = 108/117 (92.31%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           M K+SFKL +PLE R AE+ RIR KYP+R+PVIVEKA +SD+PDIDKKKYLVPADLT+GQ
Sbjct: 1   MEKNSFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFG 180
           FVYV+RKRIKL +EKAIF+F+KNTLPPTA LMSAIY+E+KDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117

[Close]
BLAST of Cp4.1LG20g03610 vs. TAIR10
Match: AT2G05630.2 (AT2G05630.2 Ubiquitin-like superfamily protein)

HSP 1 Score: 188.0 bits (476), Expect = 5.2e-48
Identity = 90/106 (84.91%), Postives = 102/106 (96.23%), Query Frame = 1 

Query: 74  LERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKL 133
           L++RQAEA RIREKYPDRIPVIVE+AE+SD+PDID+KKYLVPADLTVGQFVYV+RKRIKL
Sbjct: 56  LKKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIKL 115

Query: 134 SSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFG 180
           S EKAIFIF+KN LPPTA +MSAIY+E+KDEDGFLYM+YSGENTFG
Sbjct: 116 SPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 161

[Close]
BLAST of Cp4.1LG20g03610 vs. NCBI nr
Match: gi|659067728|ref|XP_008441000.1| (PREDICTED: autophagy-related protein 8C [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 6.4e-56
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MAKSSFKLEHPLERRQAEA RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFGF 181
           FVYV+RKRIKLSSEKAIFIFIKNTLPPTA LMS+IY+ENKDEDGFLYMTYSGENTFGF
Sbjct: 61  FVYVVRKRIKLSSEKAIFIFIKNTLPPTAALMSSIYEENKDEDGFLYMTYSGENTFGF 118

[Close]
BLAST of Cp4.1LG20g03610 vs. NCBI nr
Match: gi|743793136|ref|XP_010923850.1| (PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis])

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 1 

Query: 56  RKKLRFAMAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVP 115
           R++   AMAKSSFKLEHPLERRQAEA RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVP
Sbjct: 8   RRRNYHAMAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVP 67

Query: 116 ADLTVGQFVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGE 175
           ADLTVGQFVYV+RKRIKLS+EKAIFIF+KNTLPPTA +MSAIY+ENKDEDGFLYMTYSGE
Sbjct: 68  ADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAAMMSAIYEENKDEDGFLYMTYSGE 127

Query: 176 NTFG 180
           NTFG
Sbjct: 128 NTFG 131

[Close]
BLAST of Cp4.1LG20g03610 vs. NCBI nr
Match: gi|672176722|ref|XP_008808434.1| (PREDICTED: autophagy-related protein 8C-like [Phoenix dactylifera])

HSP 1 Score: 223.8 bits (569), Expect = 2.4e-55
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MAKSSFKLEHPLERRQAEA RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFG 180
           FVYV+RKRIKLS+EKAIFIF+KNTLPPTA +MSAIYDENKDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117

[Close]
BLAST of Cp4.1LG20g03610 vs. NCBI nr
Match: gi|661892180|emb|CDP04406.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 223.0 bits (567), Expect = 4.2e-55
Identity = 110/118 (93.22%), Postives = 116/118 (98.31%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MAKSSFKLEHPLERRQAE+ RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQAESSRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFGF 181
           FVYV+RKRIKLS+EKAIF+F+KNTLPPTA LMSAIY+ENKDEDGFLYMTYSGENTFGF
Sbjct: 61  FVYVVRKRIKLSAEKAIFVFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGF 118

[Close]
BLAST of Cp4.1LG20g03610 vs. NCBI nr
Match: gi|720073327|ref|XP_010278666.1| (PREDICTED: autophagy-related protein 8C [Nelumbo nucifera])

HSP 1 Score: 222.6 bits (566), Expect = 5.4e-55
Identity = 110/118 (93.22%), Postives = 115/118 (97.46%), Query Frame = 1 

Query: 63  MAKSSFKLEHPLERRQAEAVRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 122
           MAKSSFKLEHPLERRQAEA RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 123 FVYVIRKRIKLSSEKAIFIFIKNTLPPTAGLMSAIYDENKDEDGFLYMTYSGENTFGF 181
           FVYV+RKRIKLS+EKAIFIF+KN LPPTA +MSAIY+ENKDEDGFLYMTYSGENTFGF
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNVLPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGF 118

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g03610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATG8C_ORYSJ1.3e-5694.02Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1[more]
ATG8C_ORYSI1.3e-5694.02Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2[more]
ATG8C_ARATH1.2e-5488.89Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=1 SV=1[more]
ATG8B_ORYSI1.6e-5492.31Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1[more]
ATG8B_ORYSJ1.6e-5492.31Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2[more]
BLAST of Cp4.1LG20g03610 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC57_CUCME4.5e-5695.76Autophagy-related protein OS=Cucumis melo subsp. melo PE=3 SV=1[more]
A0A0A0LU79_CUCSA4.5e-5695.76Autophagy-related protein OS=Cucumis sativus GN=Csa_1G062890 PE=3 SV=1[more]
A0A0E0LS36_ORYPU2.2e-5584.56Autophagy-related protein OS=Oryza punctata PE=3 SV=1[more]
A0A068U7C0_COFCA2.9e-5593.22Autophagy-related protein OS=Coffea canephora GN=GSCOC_T00017785001 PE=3 SV=1[more]
J3MR15_ORYBR1.4e-5494.02Autophagy-related protein OS=Oryza brachyantha PE=3 SV=1[more]
BLAST of Cp4.1LG20g03610 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G62040.22.3e-5688.98 Ubiquitin-like superfamily protein[more]
AT4G21980.23.2e-5383.33 Ubiquitin-like superfamily protein[more]
AT4G16520.11.7e-5183.05 Ubiquitin-like superfamily protein[more]
AT4G04620.11.1e-5080.34 Ubiquitin-like superfamily protein[more]
AT2G05630.25.2e-4884.91 Ubiquitin-like superfamily protein[more]
BLAST of Cp4.1LG20g03610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659067728|ref|XP_008441000.1|6.4e-5695.76PREDICTED: autophagy-related protein 8C [Cucumis melo][more]
gi|743793136|ref|XP_010923850.1|1.4e-5590.32PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis][more]
gi|672176722|ref|XP_008808434.1|2.4e-5594.87PREDICTED: autophagy-related protein 8C-like [Phoenix dactylifera][more]
gi|661892180|emb|CDP04406.1|4.2e-5593.22unnamed protein product [Coffea canephora][more]
gi|720073327|ref|XP_010278666.1|5.4e-5593.22PREDICTED: autophagy-related protein 8C [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004241Atg8-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006914 autophagy
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
biological_process GO:0006486 protein glycosylation
biological_process GO:0008150 biological_process
cellular_component GO:0000421 autophagosome membrane
cellular_component GO:0033110 Cvt vesicle membrane
cellular_component GO:0005874 microtubule
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0008378 galactosyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g03610.1Cp4.1LG20g03610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004241Autophagy protein Atg8 ubiquitin-likePANTHERPTHR10969MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATEDcoord: 62..180
score: 2.8
IPR004241Autophagy protein Atg8 ubiquitin-likePFAMPF02991Atg8coord: 76..179
score: 4.4
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 64..179
score: 1.5
NoneNo IPR availablePANTHERPTHR10969:SF43AUTOPHAGY-RELATED PROTEIN 8A-RELATEDcoord: 62..180
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g03610Cucsa.045200Cucumber (Gy14) v1cgycpeB0040
Cp4.1LG20g03610Cucsa.085770Cucumber (Gy14) v1cgycpeB0159
Cp4.1LG20g03610CmaCh03G005400Cucurbita maxima (Rimu)cmacpeB677
Cp4.1LG20g03610CmaCh07G003120Cucurbita maxima (Rimu)cmacpeB881
Cp4.1LG20g03610CmaCh18G002630Cucurbita maxima (Rimu)cmacpeB442
Cp4.1LG20g03610CmoCh18G002690Cucurbita moschata (Rifu)cmocpeB403
Cp4.1LG20g03610CmoCh07G003010Cucurbita moschata (Rifu)cmocpeB818
Cp4.1LG20g03610CmoCh03G005610Cucurbita moschata (Rifu)cmocpeB631
Cp4.1LG20g03610Cla014449Watermelon (97103) v1cpewmB513
Cp4.1LG20g03610Cla019376Watermelon (97103) v1cpewmB503
Cp4.1LG20g03610Csa1G062890Cucumber (Chinese Long) v2cpecuB506
Cp4.1LG20g03610Csa6G513730Cucumber (Chinese Long) v2cpecuB525
Cp4.1LG20g03610MELO3C002452Melon (DHL92) v3.5.1cpemeB477
Cp4.1LG20g03610MELO3C007393Melon (DHL92) v3.5.1cpemeB485
Cp4.1LG20g03610ClCG01G021950Watermelon (Charleston Gray)cpewcgB450
Cp4.1LG20g03610ClCG03G004680Watermelon (Charleston Gray)cpewcgB463
Cp4.1LG20g03610CSPI01G10640Wild cucumber (PI 183967)cpecpiB506
Cp4.1LG20g03610CSPI06G33540Wild cucumber (PI 183967)cpecpiB527
Cp4.1LG20g03610MELO3C007393.2Melon (DHL92) v3.6.1cpemedB573
Cp4.1LG20g03610MELO3C002452.2Melon (DHL92) v3.6.1cpemedB559
Cp4.1LG20g03610CsaV3_1G010710Cucumber (Chinese Long) v3cpecucB0624
Cp4.1LG20g03610CsaV3_6G049010Cucumber (Chinese Long) v3cpecucB0650
Cp4.1LG20g03610Bhi08G001500Wax gourdcpewgoB0637
Cp4.1LG20g03610Bhi03G000445Wax gourdcpewgoB0632
Cp4.1LG20g03610CsGy6G033100Cucumber (Gy14) v2cgybcpeB814
Cp4.1LG20g03610CsGy1G010530Cucumber (Gy14) v2cgybcpeB070
Cp4.1LG20g03610Carg07551Silver-seed gourdcarcpeB1401
Cp4.1LG20g03610Carg06846Silver-seed gourdcarcpeB0697
Cp4.1LG20g03610Carg07841Silver-seed gourdcarcpeB0916
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g03610Cp4.1LG09g09180Cucurbita pepo (Zucchini)cpecpeB048
Cp4.1LG20g03610Cp4.1LG19g07810Cucurbita pepo (Zucchini)cpecpeB412
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g03610Wax gourdcpewgoB0655
Cp4.1LG20g03610Cucurbita pepo (Zucchini)cpecpeB086
Cp4.1LG20g03610Cucurbita maxima (Rimu)cmacpeB234
Cp4.1LG20g03610Cucurbita moschata (Rifu)cmocpeB201
Cp4.1LG20g03610Cucumber (Chinese Long) v2cpecuB526
Cp4.1LG20g03610Bottle gourd (USVL1VR-Ls)cpelsiB415
Cp4.1LG20g03610Bottle gourd (USVL1VR-Ls)cpelsiB417
Cp4.1LG20g03610Silver-seed gourdcarcpeB1291