Cp4.1LG20g03560 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g03560
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ankyrin repeat-containing protein
Location	Cp4.1LG20 : 1978438 .. 1978917 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGTAGCAACCTTGATAGCCACCGTAGTTTTTGCTGCAGCCTTCACCGTACCCGGTGGCAACGATGAAAACAATGGCTCGCCCATGTTTCTTAGCCACAAATGGTTCACGGTGTTCGTCGTCTCAGATGCAATAGCCTTGATCTCATCTTCGACTTCGATTCTACTGTTTTTGTCGATCTTGACGTCGCGGTGTGCAGAAACAGATTTTCTGTTTTGGTTGCCATTGGAGTTGGTTCTTGGCCTTGGTTTCCTGTTCGTTTCTGTGCTGGGAATGGTGCTGGCTTTCAGTGCCTGCTTCTTCCTGCACTATGGAAGCCATATTTCATGCATTCCATTGCTGATTACTGGGATGGCTATTGTTCCTGTTTACTGGTTCTGTGTGCTGCAATGGAAGCTTTGGGCTGATGCTTTAGCAGCATTGCATGCTAGTGGGATGTCATGTTTATTAAAATGTAGGCAGAACAAATGGTTCTGA

mRNA sequence

ATGCTAGTAGCAACCTTGATAGCCACCGTAGTTTTTGCTGCAGCCTTCACCGTACCCGGTGGCAACGATGAAAACAATGGCTCGCCCATGTTTCTTAGCCACAAATGGTTCACGGTGTTCGTCGTCTCAGATGCAATAGCCTTGATCTCATCTTCGACTTCGATTCTACTGTTTTTGTCGATCTTGACGTCGCGGTGTGCAGAAACAGATTTTCTGTTTTGGTTGCCATTGGAGTTGGTTCTTGGCCTTGGTTTCCTGTTCGTTTCTGTGCTGGGAATGGTGCTGGCTTTCAGTGCCTGCTTCTTCCTGCACTATGGAAGCCATATTTCATGCATTCCATTGCTGATTACTGGGATGGCTATTGTTCCTGTTTACTGGTTCTGTGTGCTGCAATGGAAGCTTTGGGCTGATGCTTTAGCAGCATTGCATGCTAGTGGGATGTCATGTTTATTAAAATGTAGGCAGAACAAATGGTTCTGA

Coding sequence (CDS)

ATGCTAGTAGCAACCTTGATAGCCACCGTAGTTTTTGCTGCAGCCTTCACCGTACCCGGTGGCAACGATGAAAACAATGGCTCGCCCATGTTTCTTAGCCACAAATGGTTCACGGTGTTCGTCGTCTCAGATGCAATAGCCTTGATCTCATCTTCGACTTCGATTCTACTGTTTTTGTCGATCTTGACGTCGCGGTGTGCAGAAACAGATTTTCTGTTTTGGTTGCCATTGGAGTTGGTTCTTGGCCTTGGTTTCCTGTTCGTTTCTGTGCTGGGAATGGTGCTGGCTTTCAGTGCCTGCTTCTTCCTGCACTATGGAAGCCATATTTCATGCATTCCATTGCTGATTACTGGGATGGCTATTGTTCCTGTTTACTGGTTCTGTGTGCTGCAATGGAAGCTTTGGGCTGATGCTTTAGCAGCATTGCATGCTAGTGGGATGTCATGTTTATTAAAATGTAGGCAGAACAAATGGTTCTGA

Protein sequence

MLVATLIATVVFAAAFTVPGGNDENNGSPMFLSHKWFTVFVVSDAIALISSSTSILLFLSILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGSHISCIPLLITGMAIVPVYWFCVLQWKLWADALAALHASGMSCLLKCRQNKWF

Homology

[Close]

BLAST of Cp4.1LG20g03560 vs. TrEMBL
Match: A0A0A0LRT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058080 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-37
Identity = 93/159 (58.49%), Postives = 116/159 (72.96%), Query Frame = 1


Query: 1   MLVATLIATVVFAAAFTVPGGNDENNGSPMFLSHKWFTVFVVSDAIALISSSTSILLFLS 60
           MLVATLI+TVVFAAAFTVPGG++ N G+P+F    WFTVF +SDA+AL SSSTSIL+F+S
Sbjct: 486 MLVATLISTVVFAAAFTVPGGSNNNEGTPVFQQKFWFTVFAMSDAVALFSSSTSILMFMS 545

Query: 61  ILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGSHISCIPLLITGMA 120
           ILTSR AE DF+  LP  L+ GL  LF+S++ MV+AFSA FF+ Y     CIP +++ MA
Sbjct: 546 ILTSRYAEDDFMHSLPSRLLFGLATLFISIVCMVVAFSATFFILYHKANICIPTIVSAMA 605

Query: 121 IVPVYWFCVLQWKLWADALAALHASGMSCLLKCRQNKWF 160
           I+PV  FCVLQ KLWAD     ++S    L K R+ K F
Sbjct: 606 ILPVICFCVLQCKLWADIFHNTYSSRF--LFKPRRGKLF 642

[Close]

BLAST of Cp4.1LG20g03560 vs. TrEMBL
Match: A0A0A0LU19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058090 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-34
Identity = 88/159 (55.35%), Postives = 112/159 (70.44%), Query Frame = 1


Query: 1   MLVATLIATVVFAAAFTVPGGNDENNGSPMFLSHKWFTVFVVSDAIALISSSTSILLFLS 60
           MLV+TLIATVVFAAAFTVPGGND N+G+P+F    WFT+FV+SDA  L+SSSTSIL+FLS
Sbjct: 517 MLVSTLIATVVFAAAFTVPGGNDGNSGTPIFQHEFWFTIFVISDAFGLVSSSTSILMFLS 576

Query: 61  ILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGSHISCIPLLITGMA 120
           ILTSR AE DFL  LP +L++G+  LF+S++ MV+AFSA FF+ Y      IP  +T +A
Sbjct: 577 ILTSRYAEDDFLHSLPSKLLVGIASLFISIVCMVIAFSATFFMLYNKKNMWIPATVTAIA 636

Query: 121 IVPVYWFCVLQWKLWADALAALHASGMSCLLKCRQNKWF 160
           IVP+  F  L + LW D     + S +  L +  Q K F
Sbjct: 637 IVPISCFFALHFGLWIDTFHNTYLSRL--LFRPHQRKLF 673

[Close]

BLAST of Cp4.1LG20g03560 vs. TrEMBL
Match: A0A0A0LUL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058070 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 84/137 (61.31%), Postives = 103/137 (75.18%), Query Frame = 1


Query: 1   MLVATLIATVVFAAAFTVPGGNDENNGSPMFLSHKWFTVFVVSDAIALISSSTSILLFLS 60
           M+VA LI TVVFAAAFTVPGG D+N G+P+F    WFTVFV+SDA AL+SSSTSIL+F+S
Sbjct: 558 MIVAALITTVVFAAAFTVPGGCDDNTGNPIFQHKPWFTVFVISDAAALVSSSTSILMFMS 617

Query: 61  ILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGSHISCIPLLITGMA 120
           ILTSR AE DFL  LP  L++GL  LFVS++ MV+ F+A FFL Y +    +PL +  M 
Sbjct: 618 ILTSRYAEDDFLHSLPSRLLIGLTSLFVSIVCMVVTFTATFFLLYQNAKLWVPLTVAVMT 677

Query: 121 IVPVYWFCVLQWKLWAD 138
           I+PV  FC LQ+KLW D
Sbjct: 678 ILPVCCFCRLQFKLWVD 694

[Close]

BLAST of Cp4.1LG20g03560 vs. TrEMBL
Match: A0A0A0KRV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174620 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-32
Identity = 88/158 (55.70%), Postives = 114/158 (72.15%), Query Frame = 1


Query: 1   MLVATLIATVVFAAAFTVPGGNDENNGSPMFLSHKWFTVFVVSDAIALISSSTSILLFLS 60
           MLV+TLIATV+FAAAFTVPGG D+  G+P+F    WFT+FV+SDA+ LISSS+SIL+FLS
Sbjct: 425 MLVSTLIATVIFAAAFTVPGG-DDIEGTPIFRRKFWFTIFVISDAVGLISSSSSILVFLS 484

Query: 61  ILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGSHISC-IPLLITGM 120
           ILTSR AE DFL  LP  L++G   LFVS++ MV+AFSA FF+HY ++ +  +P ++   
Sbjct: 485 ILTSRYAEHDFLHSLPSRLLIGFTSLFVSIVCMVVAFSATFFIHYHNNANIWVPTIVATT 544

Query: 121 AIVPVYWFCVLQWKLWADALAALHASGMSCLLKCRQNK 158
            IVPV  FC+LQ+KLW D     + S    L + RQ K
Sbjct: 545 TIVPVCCFCMLQFKLWVDIYYNTYLS--KFLFRPRQRK 579

[Close]

BLAST of Cp4.1LG20g03560 vs. TrEMBL
Match: A0A0A0LWX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058110 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 90/159 (56.60%), Postives = 112/159 (70.44%), Query Frame = 1


Query: 1   MLVATLIATVVFAAAFTVPGGNDENNGSPMFLSHKWFTVFVVSDAIALISSSTSILLFLS 60
           MLVATLIATVVFAAAFT+PGG +E+ G+P+     WFTVFV+SDA  LI+SS+SILLFLS
Sbjct: 508 MLVATLIATVVFAAAFTIPGGGNESTGTPIHRQEVWFTVFVMSDAAGLITSSSSILLFLS 567

Query: 61  ILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGSHISCIPLLITGMA 120
           +LTSR AE DFL  LPL L+ GL  LF S++ MV+AF+A FFL Y      +P+ I  MA
Sbjct: 568 MLTSRYAEDDFLHSLPLRLLFGLTMLFFSIVCMVIAFTAAFFLIYHEANIGVPITIAAMA 627

Query: 121 IVPVYWFCVLQWKLWADALAALHASGMS-CLLKCRQNKW 159
           I+P+   C LQ+KLW D     H + +S  L K RQ K+
Sbjct: 628 IIPI-GCCALQFKLWID---TFHNTFLSRFLFKPRQRKF 662

[Close]

BLAST of Cp4.1LG20g03560 vs. TAIR10
Match: AT5G35810.1 (AT5G35810.1 Ankyrin repeat family protein)

HSP 1 Score: 117.9 bits (294), Expect = 5.9e-27
Identity = 74/150 (49.33%), Postives = 97/150 (64.67%), Query Frame = 1


Query: 1   MLVATLIATVVFAAAFTVPGGNDENN-----GSPMFLSHKWFTVFVVSDAIALISSSTSI 60
           +LV+TLIATVVFAAAFT+PGGND +      G P F    WF VF++SD++AL+SS TSI
Sbjct: 185 ILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSSVTSI 244

Query: 61  LLFLSILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGSHISCIPLL 120
           ++FLSILTSR AE  F   LP +L+LGL  LFVS++ MVLAF+A   L          +L
Sbjct: 245 MIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRDQEPKWSLIL 304

Query: 121 ITGMAIVPVYWFCVLQWKLWADALAALHAS 146
           +  +A      F VL ++LW D L + + S
Sbjct: 305 LVYVASATALSFVVLHFQLWFDTLRSAYLS 334

[Close]

BLAST of Cp4.1LG20g03560 vs. TAIR10
Match: AT3G54070.1 (AT3G54070.1 Ankyrin repeat family protein)

HSP 1 Score: 104.8 bits (260), Expect = 5.1e-23
Identity = 67/151 (44.37%), Postives = 93/151 (61.59%), Query Frame = 1


Query: 1   MLVATLIATVVFAAAFTVPGGNDENN------GSPMFLSHKWFTVFVVSDAIALISSSTS 60
           ML ATLIATVVFAAA T+PGGND++       G P F     F +F +SD++AL SS  S
Sbjct: 409 MLGATLIATVVFAAAITIPGGNDDSGDKANTLGFPNFRKRLLFDIFTLSDSVALFSSMMS 468

Query: 61  ILLFLSILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGSHISCIPL 120
           I++FLSI TSR AE DF + LP +L+ GL  LF+S++ M+LAF+    L      S   +
Sbjct: 469 IVIFLSIFTSRYAEEDFRYDLPTKLMFGLSALFISIISMILAFTFSMILIRVEKASLSLV 528

Query: 121 LITGMAIVPVYWFCVLQWKLWADALAALHAS 146
           LI+ +A +    F  L + LW + L +++ S
Sbjct: 529 LISCLASLTALTFAYLYFHLWFNTLRSVYIS 559

[Close]

BLAST of Cp4.1LG20g03560 vs. TAIR10
Match: AT5G04700.1 (AT5G04700.1 Ankyrin repeat family protein)

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-22
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = 1


Query: 2   LVATLIATVVFAAAFTVPGGNDENN-GSPMFLSHKWFTVFVVSDAIALISSSTSILLFLS 61
           LVA LI TV FAA FTVPGG D+N+ G P  L  + F +F+VSD I+  +S TS+L+FL 
Sbjct: 514 LVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISCFASCTSVLIFLG 573

Query: 62  ILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGSHISCIPLLITGMA 121
           ILT+R +  DFL +LP +++ GL  LFVS+  M++AFS+  F   G     I       A
Sbjct: 574 ILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKEGKWIVAPTILFA 633

Query: 122 IVPVYWFCVLQWKLWADALAALHASGM 148
            +P   F +LQ+ L  + + + +  G+
Sbjct: 634 CLPALLFVLLQYPLLKEMIFSTYGKGI 660

[Close]

BLAST of Cp4.1LG20g03560 vs. TAIR10
Match: AT5G04690.1 (AT5G04690.1 Ankyrin repeat family protein)

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-20
Identity = 60/134 (44.78%), Postives = 82/134 (61.19%), Query Frame = 1


Query: 2   LVATLIATVVFAAAFTVPGGNDENNGSPMFLSH-KWFTVFVVSDAIALISSSTSILLFLS 61
           LVA LI TV FAA FTVPGG D+N+G   F  H + F +F+VSD I+  ++ TS+L+FL 
Sbjct: 472 LVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAACTSVLIFLG 531

Query: 62  ILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGSHISCIPLLITGMA 121
           ILT+R A  DFLF LP  ++ GL  LFVS+  M++AFS+  F  +       P +    A
Sbjct: 532 ILTARYAFDDFLFSLPANMIAGLSTLFVSIAAMLVAFSSALFTIFNDPWIVAPTIF--FA 591

Query: 122 IVPVYWFCVLQWKL 135
             P   F ++Q+ L
Sbjct: 592 CFPALLFVMIQYPL 603

[Close]

BLAST of Cp4.1LG20g03560 vs. TAIR10
Match: AT3G18670.1 (AT3G18670.1 Ankyrin repeat family protein)

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-18
Identity = 55/142 (38.73%), Postives = 88/142 (61.97%), Query Frame = 1


Query: 2   LVATLIATVVFAAAFTVPGGNDENNGSPMFLSHKWFTVFVVSDAIALISSSTSILLFLSI 61
           +VA LI T++F++AFTVPGG   ++G P+++    F +F++SDAI+L +S  S+L+FL I
Sbjct: 444 VVAALITTMMFSSAFTVPGGY-RSDGMPLYIHQHRFKIFLISDAISLFTSCMSLLMFLGI 503

Query: 62  LTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGSHISCIPLLITGMAI 121
           L SR  E DFL  LP +L++GL  LF+S+  M++ F        G  IS +      +A+
Sbjct: 504 LKSRYREEDFLRSLPTKLIVGLLALFLSMATMIVTFVVTLMTLVGEKISWVSAQFMFLAV 563

Query: 122 VPVYWFCVLQWKLWADALAALH 144
           +P+  F VLQ+ +  +   A +
Sbjct: 564 IPLGMFVVLQFPVLLEIFRATY 584

[Close]

BLAST of Cp4.1LG20g03560 vs. NCBI nr
Match: gi|778664857|ref|XP_011648419.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 5.1e-65
Identity = 131/160 (81.88%), Postives = 144/160 (90.00%), Query Frame = 1


Query: 1   MLVATLIATVVFAAAFTVPGGNDENNGSPMFLSHKWFTVFVVSDAIALISSSTSILLFLS 60
           MLVATLIATVVF AAFTVPGGN++NNG P+FL HKWF VFV+SD+IALISSST+ILLFLS
Sbjct: 472 MLVATLIATVVFTAAFTVPGGNNDNNGFPLFLHHKWFIVFVISDSIALISSSTAILLFLS 531

Query: 61  ILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYG-SHISCIPLLITGM 120
           ILTSRC ETDFLFWLPLELV GLGFLF+SVLGMVLAFSAC FLHYG  H S IPLLI+GM
Sbjct: 532 ILTSRCVETDFLFWLPLELVFGLGFLFLSVLGMVLAFSACLFLHYGKDHFSWIPLLISGM 591

Query: 121 AIVPVYWFCVLQWKLWADALAALHASGMSCLLKCRQNKWF 160
            IVP++WFC+LQWKLWAD LAALHA+GMS LLK R+NK F
Sbjct: 592 TIVPIFWFCMLQWKLWADGLAALHATGMSYLLKDRKNKVF 631

[Close]

BLAST of Cp4.1LG20g03560 vs. NCBI nr
Match: gi|659067708|ref|XP_008440886.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 6.7e-65
Identity = 132/160 (82.50%), Postives = 145/160 (90.62%), Query Frame = 1


Query: 1   MLVATLIATVVFAAAFTVPGGNDENNGSPMFLSHKWFTVFVVSDAIALISSSTSILLFLS 60
           MLVATLIATVVF AAFTVPGGN++NNG P+FL HKWFTVFV+SD+IALISSST+ILLFLS
Sbjct: 488 MLVATLIATVVFTAAFTVPGGNNDNNGVPLFLHHKWFTVFVISDSIALISSSTAILLFLS 547

Query: 61  ILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYG-SHISCIPLLITGM 120
           ILTSRC ETDFLFWLPLELV GLGFLF+SVLGMVLAFSAC FLHYG  + S IPLLI+GM
Sbjct: 548 ILTSRCVETDFLFWLPLELVFGLGFLFLSVLGMVLAFSACLFLHYGKDYFSWIPLLISGM 607

Query: 121 AIVPVYWFCVLQWKLWADALAALHASGMSCLLKCRQNKWF 160
           AIVP+ WFC+LQWKLWAD LAALHA+GMS LLK R+NK F
Sbjct: 608 AIVPISWFCMLQWKLWADGLAALHATGMSYLLKDRKNKVF 647

[Close]

BLAST of Cp4.1LG20g03560 vs. NCBI nr
Match: gi|659067706|ref|XP_008440873.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 2.6e-61
Identity = 124/157 (78.98%), Postives = 142/157 (90.45%), Query Frame = 1


Query: 1   MLVATLIATVVFAAAFTVPGGNDENNGSPMFLSHKWFTVFVVSDAIALISSSTSILLFLS 60
           M+VATLIATVVF AAFTVPGGN+ NNG P+FL H+WFTVFV+SD+IALISSST+ILLF+S
Sbjct: 484 MVVATLIATVVFTAAFTVPGGNNGNNGVPLFLHHEWFTVFVISDSIALISSSTAILLFMS 543

Query: 61  ILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGSHISCIPLLITGMA 120
           +LTSR A+ DFLFWLPL+LVLGLGFLF+SVLGMVLAF AC FLH+  +IS IPL+IT MA
Sbjct: 544 MLTSRRAKRDFLFWLPLQLVLGLGFLFLSVLGMVLAFGACLFLHFEKNISWIPLVITWMA 603

Query: 121 IVPVYWFCVLQWKLWADALAALHASGMSCLLKCRQNK 158
           IVP+YWFCVLQWKLWAD LAALHA+GMS LLK R+NK
Sbjct: 604 IVPIYWFCVLQWKLWADGLAALHATGMSVLLKRRKNK 640

[Close]

BLAST of Cp4.1LG20g03560 vs. NCBI nr
Match: gi|778664851|ref|XP_011648416.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 4.8e-47
Identity = 109/158 (68.99%), Postives = 124/158 (78.48%), Query Frame = 1


Query: 1   MLVATLIATVVFAAAFTVPGG-------------NDENNGSPMFLSHKWFTVFVVSDAIA 60
           MLVATLI TVVFAA FTVPGG             N+ N G+P+FL HKWFTVFV+SDA A
Sbjct: 391 MLVATLITTVVFAAIFTVPGGYTNTTSTTGSVIENNNNTGTPLFLYHKWFTVFVISDATA 450

Query: 61  LISSSTSILLFLSILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHYGS 120
           LISSST+ILLFLSILTSRCAE DFL WLPL+LV GLG LF+SV+ MVLAFSA FFL YG 
Sbjct: 451 LISSSTAILLFLSILTSRCAEEDFLLWLPLKLVFGLGTLFLSVVTMVLAFSATFFLFYGK 510

Query: 121 HISCIPLLITGMAIVPVYWFCVLQWKLWADALAALHAS 146
             + +PLL+ GMAIVPVY F VLQ++LWADA+AAL A+
Sbjct: 511 DTAWVPLLVAGMAIVPVYCFGVLQFRLWADAIAALRAT 548

[Close]

BLAST of Cp4.1LG20g03560 vs. NCBI nr
Match: gi|659067701|ref|XP_008440848.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Cucumis melo])

HSP 1 Score: 193.7 bits (491), Expect = 2.4e-46
Identity = 108/160 (67.50%), Postives = 123/160 (76.88%), Query Frame = 1


Query: 1   MLVATLIATVVFAAAFTVPGG---------------NDENNGSPMFLSHKWFTVFVVSDA 60
           MLVATLI TVVFAA FTVPGG               N+ N G+P+FL HKWFTVFV+SDA
Sbjct: 391 MLVATLITTVVFAAIFTVPGGYTNTTTTSTTGSVIENNNNTGTPLFLYHKWFTVFVISDA 450

Query: 61  IALISSSTSILLFLSILTSRCAETDFLFWLPLELVLGLGFLFVSVLGMVLAFSACFFLHY 120
            ALISSST+ILLFLSILTSRCAE DFL WLPL+LV GLG LF+SV+ MVLAFSA FFL Y
Sbjct: 451 TALISSSTAILLFLSILTSRCAEEDFLLWLPLKLVFGLGTLFLSVVTMVLAFSATFFLFY 510

Query: 121 GSHISCIPLLITGMAIVPVYWFCVLQWKLWADALAALHAS 146
           G   + +PLL+ GMAIVPVY F VLQ++LWAD +AAL A+
Sbjct: 511 GKDTAWVPLLVAGMAIVPVYCFGVLQFRLWADTIAALRAT 550

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g03560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG20g03560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRT6_CUCSA	1.4e-37	58.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058080 PE=4 SV=1	[more]
A0A0A0LU19_CUCSA	1.5e-34	55.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058090 PE=4 SV=1	[more]
A0A0A0LUL7_CUCSA	1.6e-33	61.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058070 PE=4 SV=1	[more]
A0A0A0KRV4_CUCSA	1.0e-32	55.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174620 PE=4 SV=1	[more]
A0A0A0LWX0_CUCSA	1.8e-32	56.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058110 PE=4 SV=1	[more]

BLAST of Cp4.1LG20g03560 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35810.1	5.9e-27	49.33	Ankyrin repeat family protein	[more]
AT3G54070.1	5.1e-23	44.37	Ankyrin repeat family protein	[more]
AT5G04700.1	1.5e-22	42.18	Ankyrin repeat family protein	[more]
AT5G04690.1	3.1e-20	44.78	Ankyrin repeat family protein	[more]
AT3G18670.1	2.9e-18	38.73	Ankyrin repeat family protein	[more]

BLAST of Cp4.1LG20g03560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664857\|ref\|XP_011648419.1\|	5.1e-65	81.88	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]	[more]
gi\|659067708\|ref\|XP_008440886.1\|	6.7e-65	82.50	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo]	[more]
gi\|659067706\|ref\|XP_008440873.1\|	2.6e-61	78.98	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo]	[more]
gi\|778664851\|ref\|XP_011648416.1\|	4.8e-47	68.99	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]	[more]
gi\|659067701\|ref\|XP_008440848.1\|	2.4e-46	67.50	PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Cucumis ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026961	PGG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g03560.1	Cp4.1LG20g03560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026961	PGG domain	PFAM	PF13962	PGG	coord: 1..102 score: 8.3
None	No IPR available	PANTHER	PTHR24177	FAMILY NOT NAMED	coord: 1..137 score: 5.9
None	No IPR available	PANTHER	PTHR24177:SF42	ANKYRIN REPEAT FAMILY PROTEIN	coord: 1..137 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG20g03560	Wild cucumber (PI 183967)	cpecpiB506
Cp4.1LG20g03560	Wild cucumber (PI 183967)	cpecpiB527
Cp4.1LG20g03560	Cucumber (Chinese Long) v2	cpecuB506
Cp4.1LG20g03560	Cucumber (Chinese Long) v2	cpecuB525
Cp4.1LG20g03560	Bottle gourd (USVL1VR-Ls)	cpelsiB415
Cp4.1LG20g03560	Bottle gourd (USVL1VR-Ls)	cpelsiB417
Cp4.1LG20g03560	Watermelon (Charleston Gray)	cpewcgB450
Cp4.1LG20g03560	Watermelon (Charleston Gray)	cpewcgB463
Cp4.1LG20g03560	Watermelon (97103) v1	cpewmB503
Cp4.1LG20g03560	Watermelon (97103) v1	cpewmB513
Cp4.1LG20g03560	Melon (DHL92) v3.5.1	cpemeB485
Cp4.1LG20g03560	Melon (DHL92) v3.5.1	cpemeB477
Cp4.1LG20g03560	Cucumber (Gy14) v2	cgybcpeB070
Cp4.1LG20g03560	Cucumber (Gy14) v2	cgybcpeB814
Cp4.1LG20g03560	Melon (DHL92) v3.6.1	cpemedB559
Cp4.1LG20g03560	Melon (DHL92) v3.6.1	cpemedB573
Cp4.1LG20g03560	Silver-seed gourd	carcpeB0697
Cp4.1LG20g03560	Silver-seed gourd	carcpeB0916
Cp4.1LG20g03560	Silver-seed gourd	carcpeB1291
Cp4.1LG20g03560	Silver-seed gourd	carcpeB1401
Cp4.1LG20g03560	Cucumber (Chinese Long) v3	cpecucB0624
Cp4.1LG20g03560	Cucumber (Chinese Long) v3	cpecucB0650
Cp4.1LG20g03560	Wax gourd	cpewgoB0637
Cp4.1LG20g03560	Wax gourd	cpewgoB0655
Cp4.1LG20g03560	Cucurbita pepo (Zucchini)	cpecpeB048
Cp4.1LG20g03560	Cucurbita pepo (Zucchini)	cpecpeB086
Cp4.1LG20g03560	Cucurbita pepo (Zucchini)	cpecpeB412
Cp4.1LG20g03560	Cucumber (Gy14) v1	cgycpeB0040
Cp4.1LG20g03560	Cucumber (Gy14) v1	cgycpeB0159
Cp4.1LG20g03560	Cucurbita maxima (Rimu)	cmacpeB234
Cp4.1LG20g03560	Cucurbita maxima (Rimu)	cmacpeB442
Cp4.1LG20g03560	Cucurbita maxima (Rimu)	cmacpeB677
Cp4.1LG20g03560	Cucurbita maxima (Rimu)	cmacpeB881
Cp4.1LG20g03560	Cucurbita moschata (Rifu)	cmocpeB201
Cp4.1LG20g03560	Cucurbita moschata (Rifu)	cmocpeB403
Cp4.1LG20g03560	Cucurbita moschata (Rifu)	cmocpeB631
Cp4.1LG20g03560	Cucurbita moschata (Rifu)	cmocpeB818