Cp4.1LG20g02310 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g02310
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG20 : 1333193 .. 1336163 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAATTTAAAAGAAGAGAAAAATTAAAAGCAAGTGAAAATCCTGAGATTCGAACACAAGATCTCTGGGTCGTGACCTGATAATTAGGGCGAAAATTTCATATTTGGAAACAATAAAATTTTTCAGTTGGTTCATCTTGTTCGCTCTCTCTCTCGAGTCTTCCCCTTGCTTTTCGTTTCTCTCATCTCCACGTCGCAATTGAACAAAGGTAATCTTCTGTACTGTTCATCTCTAAAATCTAAATCGATTTGCATTCTTGTAATTCTAGGAATCTTTGTTTAGATCTGTAATTTTCTTTGGAGTTCTCAGTAATTTGACTTGCACTCACATATTTCGATTCGGATGTACTGATTCGATGTGTTTGCTATTTCCATCTTTTTGTCCCATTTATGAATGAAGAAGTATTCTATTCACTATGCAATACTTCGTGATTTTTGTTCATCTTTGATTTTAATGTTGACTCTTTTCGAGGCATTTTGTTTCTCTTATGACGTTGATACATGTTTCTTGTGAGGTTCTGCAAAATATTTGACCCAACCCGACCCTCGCAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTGTACTATTGGTTTCTTGTGTGATTGGCATCTTAGATTGGAAAAGTTAGGGTTTCACTAGATTGTACTTTGTTATTTAATTCTAAATTCAATTATAAATTCCTCATTTATAATGAGGCATCTTATTACATTTCCGTCTCGCCGTAAATCAAATTAATCCTCATGCGGAGCATAATTTTGCTTCTGGTTTGAATTTTTTTTTTTTTTTTTTTTTACTTATTAATGTGATTATTGCTGATTTTTGTTGAATAATACATCCGTAGGCAGTTCAAACTTTGTGATGGCAACCGAAACCAAAACCGCGACTGAGGAAGTTAAGATTGACCTCTTTGAAGATGATGATGAGTTCGAAGAGTTTGAGATTAATGAAGGTACAGCTTGAAATCCTCTCCTTATTTATGGCTGGCCGATGGGCATTTACTTGTTTGATGTTCCAGACAAAAGAATGGGAATGCAATAAGGGTTTGCGTAGTCCTGTTACCGACTTGCTAATAACTGATAACTGCTATAGGAATAATAGCATTCACTAATTTGGATCAGCACACCCTAAATATTTCTTGTTCGCCTATAACCTCTATTTTATATCATTTCCATCTGATACAATTAGAATCGTAATGAGCTGGAGTTGTAATACTATACAATTACACTAATAATAATGATCAATAAAAAGAACTTTTAGTAAGAGAGAAAAAAAGGCCAGAGTTACATGCCTTTTGGCTTTAGAGGAATATCCTTCCATGTCTGAGGTTAACATTCTACTGTTAGGATTCGGGAAGTCCATGGGAAGCCTTTATCTGCATTAAAATTTTTCTGGTATTTGGTATGATACACACAAATTGAGAAGCTTTTATTTATTACTGTGTGCTCAAGAATACTAGGAGTTTTAGTTGTATATTAGAAAATTGAAGGGATGATCTTGGTGGGATGGTTGGCAAAATCAATTGGTGGATGTGCATTGACCTTGATCTGCCTTCTAGGGAAGAAGTAGAAGTTTTTGTTAAGTAGGCTCCCACTTTTGCAGGTGGGAGTGAAGAAGCATGCTCTGCTGCTTCATTTGAATCCTCCCATGAGCAATGCAACAGTGCTTTGAGGAAGGAGATTAGAGTCCTGTGGTTTTCTGTTGATATGTTTACACTCTAGCTGATATCTTGTCTCTTTTGTCAGAATCTGAATTTTTTTTATGTCTTGAGCTCTTGAAGATGAACTTGTTAGAGAGCATCTTTGCCACTTGAAGATGAACTTGTTAGCTAACATGAATGGATTATTTCCTAAGCGTCTTTGCCACTTGAAGATGAACTTGTTAGAGAGAGATGGTGGGGGGCACATGTTTTCTTTTTATTGTTTATGGCAGTTAGTTTCTGAGTGATCATAGATATGGGAGAACGCCATGACACTCTATGATATCTCTATAGTTGTTCTTTATGGGTTTGATAGACATTTTTGATGGATGATCATATGAACTGCAGAATGGGAAGTCAAAGAAGAAGGGAAGGAAATTACACAGCAGTGGGAAGACGACTGGGATGATGATGATGTCAATGACGACTTCTCCTTGCAGCTTCGGAGAGAATTGGAGAGCAATACCGAGAAGAAATGAGAAGATTTTTTTGTTGTCTGTATGTTTCTTATCTTTCAAGATCTTATGTTTACTAGGTCTTTTGACCCCAAGGTGGGATTACGACGTCTTCTATCCTTCTTGTAAATCGTGGTATTATGAACATGCTTAGAAGCCTAAAACACTGATACCTTTTCAGATCAGATAATTGGAAAATCGTTGAAACCTTTGGCACCGAAGAAAACAGTGTTCTTTTGTCGTTGTTGTTGTTGTCGTCGTCGTCACAGACCATGAATCCATCGAGATTATCAACATTGCGATGGAGTCTTTTCAAATAGATGTCCGAAATGTTGTTGGAATGTCAAAAATGTTTGAAAGAGTTGGCAGTTGTTGGAATGTTGACAAATTGCCCGACTAGTCACTACAAAAAATGATATCCCTTCATATTTTTACCGAGTCGTGTAAATTTCAGTCTTTATTTGCATACCTTCATAGTCTTAAACTTTTATATTCATCTCTTGCAACTACACAATTCATGTCATGTTT

mRNA sequence

GTAATTTAAAAGAAGAGAAAAATTAAAAGCAAGTGAAAATCCTGAGATTCGAACACAAGATCTCTGGGTCGTGACCTGATAATTAGGGCGAAAATTTCATATTTGGAAACAATAAAATTTTTCAGTTGGTTCATCTTGTTCGCTCTCTCTCTCGAGTCTTCCCCTTGCTTTTCGTTTCTCTCATCTCCACGTCGCAATTGAACAAAGGCAGTTCAAACTTTGTGATGGCAACCGAAACCAAAACCGCGACTGAGGAAGTTAAGATTGACCTCTTTGAAGATGATGATGAGTTCGAAGAGTTTGAGATTAATGAAGAATGGGAAGTCAAAGAAGAAGGGAAGGAAATTACACAGCAGTGGGAAGACGACTGGGATGATGATGATGTCAATGACGACTTCTCCTTGCAGCTTCGGAGAGAATTGGAGAGCAATACCGAGAAGAAATGAGAAGATTTTTTTGTTGTCTGTATGTTTCTTATCTTTCAAGATCTTATGTTTACTAGGTCTTTTGACCCCAAGGTGGGATTACGACGTCTTCTATCCTTCTTGTAAATCGTGGTATTATGAACATGCTTAGAAGCCTAAAACACTGATACCTTTTCAGATCAGATAATTGGAAAATCGTTGAAACCTTTGGCACCGAAGAAAACAGTGTTCTTTTGTCGTTGTTGTTGTTGTCGTCGTCGTCACAGACCATGAATCCATCGAGATTATCAACATTGCGATGGAGTCTTTTCAAATAGATGTCCGAAATGTTGTTGGAATGTCAAAAATGTTTGAAAGAGTTGGCAGTTGTTGGAATGTTGACAAATTGCCCGACTAGTCACTACAAAAAATGATATCCCTTCATATTTTTACCGAGTCGTGTAAATTTCAGTCTTTATTTGCATACCTTCATAGTCTTAAACTTTTATATTCATCTCTTGCAACTACACAATTCATGTCATGTTT

Coding sequence (CDS)

ATGATGATGAGTTCGAAGAGTTTGAGATTAATGAAGAATGGGAAGTCAAAGAAGAAGGGAAGGAAATTACACAGCAGTGGGAAGACGACTGGGATGATGATGATGTCAATGACGACTTCTCCTTGCAGCTTCGGAGAGAATTGGAGAGCAATACCGAGAAGAAATGAGAAGATTTTTTTGTTGTCTGTATGTTTCTTATCTTTCAAGATCTTATGTTTACTAGGTCTTTTGACCCCAAGGTGGGATTACGACGTCTTCTATCCTTCTTGTAAATCGTGGTATTATGAACATGCTTAG

Protein sequence

MMMSSKSLRLMKNGKSKKKGRKLHSSGKTTGMMMMSMTTSPCSFGENWRAIPRRNEKIFLLSVCFLSFKILCLLGLLTPRWDYDVFYPSCKSWYYEHA
Homology
[Close]
BLAST of Cp4.1LG20g02310 vs. TrEMBL
Match: A0A0Q3K076_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_2g12001 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-06
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 1  MMMSSKSLRLMKNGKSKKKGRKLHSSGKTTGMMMMSMTTSPCSFGENWRAIPRRNEKIFL 60
          M  SS+SLR  K+G ++K G K  S+G+ TG MMMSM TSPCS G++WRA  +R      
Sbjct: 1  MTTSSRSLRSTKSGMTRKMGMKQFSNGRMTGTMMMSMMTSPCSSGKSWRATRQRTR---- 60

Query: 61 LSVCFLSF 69
            +C L+F
Sbjct: 61 --ICGLAF 62

[Close]
BLAST of Cp4.1LG20g02310 vs. TrEMBL
Match: J3KZ99_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-06
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 1 

Query: 3  MSSKSLRLMKNGKSKKKGRKLHSSGKTTGMMMMSMTTSPCSFGENWRAIPRRNEKIFLLS 62
          MSS+SLR  KNG ++KK  +  ++G+ T MMMMSMTTS C+  ++WRA  RR     + S
Sbjct: 23 MSSRSLRSTKNGTTRKKAMRQFNNGRMTRMMMMSMTTSLCNSRKSWRATYRRTR---ICS 82

Query: 63 VCFLSFKI 71
          V F SF+I
Sbjct: 83 VAFSSFRI 87

[Close]
BLAST of Cp4.1LG20g02310 vs. TrEMBL
Match: B7E359_ORYSJ (Os01g0316800 protein OS=Oryza sativa subsp. japonica GN=Os01g0316800 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.8e-06
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1 

Query: 4  SSKSLRLMKNGKSKKKGRKLHSSGKTTGMMMMSMTTSPCSFGENWRAIPRRNEKIFLLSV 63
          SS+SLR  KNG ++KK  +  S+G+ TGM MMSMTTS CS G++WRA  RR     L+  
Sbjct: 17 SSRSLRSTKNGMTRKKATRQFSNGRMTGMTMMSMTTSLCSSGKSWRASHRRTRTCGLVFS 76

Query: 64 CF 66
           F
Sbjct: 77 TF 78

[Close]
BLAST of Cp4.1LG20g02310 vs. TrEMBL
Match: I1NMK6_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.8e-06
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1 

Query: 4  SSKSLRLMKNGKSKKKGRKLHSSGKTTGMMMMSMTTSPCSFGENWRAIPRRNEKIFLLSV 63
          SS+SLR  KNG ++KK  +  S+G+ TGM MMSMTTS CS G++WRA  RR     L+  
Sbjct: 17 SSRSLRSTKNGMTRKKATRQFSNGRMTGMTMMSMTTSLCSSGKSWRASHRRTRTCGLVFS 76

Query: 64 CF 66
           F
Sbjct: 77 TF 78

[Close]
BLAST of Cp4.1LG20g02310 vs. TrEMBL
Match: A6N0Q2_ORYSI (Deleted in split hand/splt foot protein (Fragment) OS=Oryza sativa subsp. indica PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.8e-06
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1 

Query: 4  SSKSLRLMKNGKSKKKGRKLHSSGKTTGMMMMSMTTSPCSFGENWRAIPRRNEKIFLLSV 63
          SS+SLR  KNG ++KK  +  S+G+ TGM MMSMTTS CS G++WRA  RR     L+  
Sbjct: 7  SSRSLRSTKNGMTRKKATRQFSNGRMTGMTMMSMTTSLCSSGKSWRASHRRTRTCGLVFS 66

Query: 64 CF 66
           F
Sbjct: 67 TF 68

[Close]
BLAST of Cp4.1LG20g02310 vs. NCBI nr
Match: gi|944068669|gb|KQK04153.1| (hypothetical protein BRADI_2g12001 [Brachypodium distachyon])

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-06
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 1  MMMSSKSLRLMKNGKSKKKGRKLHSSGKTTGMMMMSMTTSPCSFGENWRAIPRRNEKIFL 60
          M  SS+SLR  K+G ++K G K  S+G+ TG MMMSM TSPCS G++WRA  +R      
Sbjct: 1  MTTSSRSLRSTKSGMTRKMGMKQFSNGRMTGTMMMSMMTSPCSSGKSWRATRQRTR---- 60

Query: 61 LSVCFLSF 69
            +C L+F
Sbjct: 61 --ICGLAF 62

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g02310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g02310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0Q3K076_BRADI3.9e-0648.53Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_2g12001 PE=4 SV=1[more]
J3KZ99_ORYBR5.1e-0650.00Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1[more]
B7E359_ORYSJ8.8e-0651.61Os01g0316800 protein OS=Oryza sativa subsp. japonica GN=Os01g0316800 PE=2 SV=1[more]
I1NMK6_ORYGL8.8e-0651.61Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1[more]
A6N0Q2_ORYSI8.8e-0651.61Deleted in split hand/splt foot protein (Fragment) OS=Oryza sativa subsp. indica... [more]
BLAST of Cp4.1LG20g02310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g02310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|944068669|gb|KQK04153.1|5.7e-0648.53hypothetical protein BRADI_2g12001 [Brachypodium distachyon][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g02310.1Cp4.1LG20g02310.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g02310Cucurbita pepo (Zucchini)cpecpeB049
Cp4.1LG20g02310Cucurbita pepo (Zucchini)cpecpeB350
Cp4.1LG20g02310Cucurbita pepo (Zucchini)cpecpeB440
Cp4.1LG20g02310Cucumber (Gy14) v1cgycpeB0203
Cp4.1LG20g02310Cucumber (Gy14) v1cgycpeB0559
Cp4.1LG20g02310Cucurbita maxima (Rimu)cmacpeB083
Cp4.1LG20g02310Cucurbita maxima (Rimu)cmacpeB234
Cp4.1LG20g02310Cucurbita maxima (Rimu)cmacpeB439
Cp4.1LG20g02310Cucurbita moschata (Rifu)cmocpeB058
Cp4.1LG20g02310Cucurbita moschata (Rifu)cmocpeB118
Cp4.1LG20g02310Cucurbita moschata (Rifu)cmocpeB201
Cp4.1LG20g02310Cucurbita moschata (Rifu)cmocpeB404
Cp4.1LG20g02310Cucurbita moschata (Rifu)cmocpeB696
Cp4.1LG20g02310Wild cucumber (PI 183967)cpecpiB505
Cp4.1LG20g02310Wild cucumber (PI 183967)cpecpiB522
Cp4.1LG20g02310Cucumber (Chinese Long) v2cpecuB505
Cp4.1LG20g02310Cucumber (Chinese Long) v2cpecuB520
Cp4.1LG20g02310Bottle gourd (USVL1VR-Ls)cpelsiB418
Cp4.1LG20g02310Bottle gourd (USVL1VR-Ls)cpelsiB431
Cp4.1LG20g02310Watermelon (Charleston Gray)cpewcgB452
Cp4.1LG20g02310Watermelon (Charleston Gray)cpewcgB474
Cp4.1LG20g02310Watermelon (97103) v1cpewmB528
Cp4.1LG20g02310Watermelon (97103) v1cpewmB502
Cp4.1LG20g02310Watermelon (97103) v1cpewmB512
Cp4.1LG20g02310Melon (DHL92) v3.5.1cpemeB467
Cp4.1LG20g02310Melon (DHL92) v3.5.1cpemeB478
Cp4.1LG20g02310Melon (DHL92) v3.5.1cpemeB482
Cp4.1LG20g02310Cucumber (Gy14) v2cgybcpeB069
Cp4.1LG20g02310Cucumber (Gy14) v2cgybcpeB085
Cp4.1LG20g02310Melon (DHL92) v3.6.1cpemedB560
Cp4.1LG20g02310Melon (DHL92) v3.6.1cpemedB567
Cp4.1LG20g02310Silver-seed gourdcarcpeB0511
Cp4.1LG20g02310Silver-seed gourdcarcpeB0696
Cp4.1LG20g02310Silver-seed gourdcarcpeB0872
Cp4.1LG20g02310Silver-seed gourdcarcpeB1401
Cp4.1LG20g02310Cucumber (Chinese Long) v3cpecucB0623
Cp4.1LG20g02310Cucumber (Chinese Long) v3cpecucB0638
Cp4.1LG20g02310Wax gourdcpewgoB0625
Cp4.1LG20g02310Wax gourdcpewgoB0638
Cp4.1LG20g02310Wax gourdcpewgoB0665