Cp4.1LG20g01220 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g01220
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG20 : 617683 .. 621180 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCTTTGTCTTGGTTATTACTCAGTTTAGCTTCAAAACCCACTCTTCTTTCCCTCCTCGAACTTCGCATATCTTTACGTCAACTTCTTCCATTACTGCGTCGATATCTACTTCCTCGCGTCCGATCACCGATCATCTGGCTGTAGATGACAAGAAGCCCACGCCGCCGCCAAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTATGATCGCACGCGCCATAATGTCCGTATGCTCCTATCTCTGCTATATGAAATCGAAATTTCTCTTTTCGTAACTATACCGAACGAAAAGATTATGATTTACTTTCTGTTTAATTAATGAAGTATGCGTGGGAAACCTCTTAGGGCTGTTTCCCGAGCATGAACTTACGATTATCTCGAGAAAATTAGGATTTAAGATTGATTATTAGTGTTATCTGGATGGCCTTTATGAAGACGAATTGAAACACTAGCAGTAGCTATTGCTATGGCTAAATTTCCAGCTAGGTTTTGAGATAGTGGATCCTGTAGCTGAAGCTGAAGGGATTTCCAGGTAGGTCTTGTGGGCATTCATCTTAATACCAGGAGCTACAGCGGTAGGTTCTCATGTAGTATCTGTCTGGTCCTGTTTCATACCCTCTGCCTTTTCTTTATATTTTTTTTATATATATCAACAGAAGTTGCATTCATGATGAACAGTTTGTGTGGTCATTTTGGCCCAATCTATTCTAAGCTTCGTATCTGAACAATGCTGTTTTTTATTTTCTATTATCTGTGAGGCATCTCAGCAGTGCATGTGTTGTCCATCCTGAAAAAAAGAAGCATATTCCATTTTAATGGACTTCTGGTTGAAAGGCTGTGCTTCTGCAGAATTTTGTCTCACAAGGAACAATATACTTTCTTTGAATATGAATTTTGCTTGAAATTTGACTGTAGAAGTTTGTCTTACTGAAAAGCGTACTTTCTTCAGATCTGAACACAGATTTTATATTTGTGAACTTTTGTAGCTTTTCAGAGGAGAAAATAGAATTTACTTGGTTTGACTGAATAATAGTAAATGTATTAAAAGACACCATGTGCGCCTGATCCAAGAATTTAAGCTCAGTAAAAGATTCTAGGATTACGAGTTTTGATTGTATGATTTAAGTTTGTAAATAGAATAAACATTAAGAAGAACAACAGGCTGAGAGAGATGAATTTTAATTGCTTATTTGCTACCCGTGGCAGGATGAGGAGTGTCATTGATCACTTGAAAGGCAGTCGAGATTACCCACGCCGGTTCTATATGATATCAGCTGATAAATGGGTGAAAGCATTCTAGGCATCATATGGCGCCCTCCCGGGAAAATGGATGCTTCAATAAACAAGAACGAGATGAGGTGTGTAAAATGCTATCATATTTCCTGCTATATGAAGCTTTTTGATAATCGAACTGAGTTTAGTTTTAACCATCCAAGTGGTTGGAATCTCTTGTCAGTTAAAGTTTTTACATTGCAAGTTGACTCAAACACAATACGGATTCTTTTGGTCGAGGAGTTCAGCAAAAGTGCAACTTTTGTCCAACTCCCACAAACCTCGGGAACAAATAGGTTGAAAACGTTCAATATTTTAACCCTTTTATGGACCTTGAAGGGTTCCTTTTTGTTTACTGTGTGCATCAAATTGCTTTATACATGGGCGGCATTCGCTACAGTTTCGGCTACCAACTTCCTTGAAATCTCTGAATGGGTCTGAATTTGAATGGGATTGTTAGGAAACACCACTCTTCTCGACAATAGTATGATATTGTTCTTTGAGCACAAGCTCTCATGACTTTGCTTTTGGTTTCCTAAAAAGTCTCGTACCAATAGAGATGTATTATAAGTAACTTATGAACTCATGATTAACCTCTTGATTAGCCGATGTTGGACTCCTCCCCCAACAATCCTCCCCTCGAACAAAGTACATTATAGAGCCTCTCTAGAGGCTTATGGAGTCTAGACAACCTCCCCTTAATTGAGACTCGACTCTTTTTCTTTGAACCCCTCTAACAAAGTACACAATTTGTTTGACACTTGAGTCATTTTTACTACACCTTCGAGGCTCACAACTTCTTTGTTCAACATTTGAGGATTCTATTGAGATGGCTAAATTAAGAGTGTGACTCTATACCATATTGGGAATTACGCCTCTTCCCAATGTTATGATATTGTTCACTTTGAGCATAAAAATAACTCTAAGAGTGTATTCCTTACCTACAAATGTGATCAAGCTTTTAATTAGTGGAAGGGACTCATCTCTTAACCATCCTCTTCATTATTGAGTGGAAGAAGTATTGAACCCCATCTATCGTAATCACACTGAATCCTCTCTCTCTCTCGGATCGAAATCTCTTAGGCATAAAGTTCTGATCTTTGAAGAGATCAATAAAGCTAAAAGCCTCACCCACCATGCAGCAAACCAAGCGATAAAAGTTGAGAAGGACAGGAATTGATAGAAGGGAGCTACCTCTACCTAACTTTAATTGCTTTAATTATCTCATCTTAGCAAATCACCTACGGAGGTTCTGTCTTTGCGCGTCTTGTCATCTTCTTCTCTATGCATTTCCTCTGTTGGGTGGCCCATGTTTTGTGTGTAATTTAACGGTTTGTCTGCCTGTGTTTTCAGGTTTCTGGTGAACACCTTCCCCATGGAATTGCCTCATACCAAGACGATTTCATGTAGCTTTGAACAACAAACCTTCATCGTCTTCCTTTGATTCAATTCGCCTCTCCCATAAAATATTTTCTTTAAACGTCGATTAACACCCACCCAGTTGTCGTTGTAAGCAGTGATATCAGGAAGCGGTGTGGGGTTGAAGAATCGAGGGAGAACTGATTGTCATAAAATCTGCAGATAAGGCTTAGTTAGACACTTGTTGTGCAGCGCTCTGTTTCCATGGCCGCCCTCAACTTCCTCCATAAATGCAAAACCATCCTCAACTCCAACGCTTTACTCCCTTCTTACGTCTGCTTGTCCTCTTCTTTCTTCTCCCTCTTATTTATTGTTATGGTTGAGTGGGAACTAACCATTCTAGGTAAGAGTAAGAGTGTAAAAACCACTCCCCTGATGTTGAAGACATACATAACCAGTCAAAATAGATAATATCGGCTAGTAATGGGTTTTGGTTGTTACATATGGTATTAGAGCCAGACACGGGTCTTGTACCAGCGAGGACACTGACCTCCAAACGAGTGGATTGCAAGATCTCATATCAGTTGGAGAGAAGAACACAACATTCCTTATAATGATGTGAAAACTCTCTCTAATAGACGAATTTTAAAGTTGTAAGACTGACGGCAAATATATCGTGACAGGAGACGATTGAAGTTCAAAAAAGGGAGTAATGTCCCATTCAATTCAAACATTCACATGAAGGCACCGTCCCCATTGTTGTCTTTTCTTTTTTGTATTTATTTATTCCTATTCATAATAAGAATTTCCATGTGCCCTCGTATTAAATCAAATCAATCCAATCTAATTTAATTTA

mRNA sequence

GCCTTTGTCTTGGTTATTACTCAGTTTAGCTTCAAAACCCACTCTTCTTTCCCTCCTCGAACTTCGCATATCTTTACGTCAACTTCTTCCATTACTGCGTCGATATCTACTTCCTCGCGTCCGATCACCGATCATCTGGCTGTAGATGACAAGAAGCCCACGCCGCCGCCAAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTATGATCGCACGCGCCATAATGTCCCTAGGTTTTGAGATAGTGGATCCTGTAGCTGAAGCTGAAGGGATTTCCAGGTTTCTGGTGAACACCTTCCCCATGGAATTGCCTCATACCAAGACGATTTCATGTAGCTTTGAACAACAAACCTTCATCGTCTTCCTTTGATTCAATTCGCCTCTCCCATAAAATATTTTCTTTAAACGTCGATTAACACCCACCCAGTTGTCGTTGTAAGCAGTGATATCAGGAAGCGGTGTGGGGTTGAAGAATCGAGGGAGAACTGATTGTCATAAAATCTGCAGATAAGGCTTAGTTAGACACTTGTTGTGCAGCGCTCTGTTTCCATGGCCGCCCTCAACTTCCTCCATAAATGCAAAACCATCCTCAACTCCAACGCTTTACTCCCTTCTTACGTCTGCTTGTCCTCTTCTTTCTTCTCCCTCTTATTTATTGTTATGGTTGAGTGGGAACTAACCATTCTAGGTAAGAGTAAGAGTGTAAAAACCACTCCCCTGATGTTGAAGACATACATAACCAGTCAAAATAGATAATATCGGCTAGTAATGGGTTTTGGTTGTTACATATGGTATTAGAGCCAGACACGGGTCTTGTACCAGCGAGGACACTGACCTCCAAACGAGTGGATTGCAAGATCTCATATCAGTTGGAGAGAAGAACACAACATTCCTTATAATGATGTGAAAACTCTCTCTAATAGACGAATTTTAAAGTTGTAAGACTGACGGCAAATATATCGTGACAGGAGACGATTGAAGTTCAAAAAAGGGAGTAATGTCCCATTCAATTCAAACATTCACATGAAGGCACCGTCCCCATTGTTGTCTTTTCTTTTTTGTATTTATTTATTCCTATTCATAATAAGAATTTCCATGTGCCCTCGTATTAAATCAAATCAATCCAATCTAATTTAATTTA

Coding sequence (CDS)

ATGACAAGAAGCCCACGCCGCCGCCAAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTATGATCGCACGCGCCATAATGTCCCTAGGTTTTGAGATAGTGGATCCTGTAGCTGAAGCTGAAGGGATTTCCAGGTTTCTGGTGAACACCTTCCCCATGGAATTGCCTCATACCAAGACGATTTCATGTAGCTTTGAACAACAAACCTTCATCGTCTTCCTTTGA

Protein sequence

MTRSPRRRQSHGSSWASGIPGRSMIARAIMSLGFEIVDPVAEAEGISRFLVNTFPMELPHTKTISCSFEQQTFIVFL
Homology
[Close]
BLAST of Cp4.1LG20g01220 vs. NCBI nr
Match: gi|778657221|ref|XP_011650491.1| (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 7.8e-11
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1 

Query: 1  MTRSPRRRQSHGSSWASGIPGRSMIARAIMSLGFEIVDPVAEAEGIS 48
          MTRSPRRR+SHGSS AS IPGRS I RAIMS+GFE+VD VAEAEGIS
Sbjct: 1  MTRSPRRRRSHGSSSASEIPGRSTIVRAIMSVGFEMVDAVAEAEGIS 47

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g01220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g01220 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g01220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g01220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778657221|ref|XP_011650491.1|7.8e-1182.98PREDICTED: peptidyl-tRNA hydrolase, chloroplastic isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g01220.1Cp4.1LG20g01220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g01220Wax gourdcpewgoB0626
Cp4.1LG20g01220Wax gourdcpewgoB0635
Cp4.1LG20g01220Wax gourdcpewgoB0663
Cp4.1LG20g01220Cucurbita pepo (Zucchini)cpecpeB049
Cp4.1LG20g01220Cucurbita pepo (Zucchini)cpecpeB349
Cp4.1LG20g01220Cucurbita pepo (Zucchini)cpecpeB442
Cp4.1LG20g01220Cucumber (Gy14) v1cgycpeB0257
Cp4.1LG20g01220Cucumber (Gy14) v1cgycpeB0558
Cp4.1LG20g01220Cucurbita maxima (Rimu)cmacpeB084
Cp4.1LG20g01220Cucurbita maxima (Rimu)cmacpeB139
Cp4.1LG20g01220Cucurbita maxima (Rimu)cmacpeB234
Cp4.1LG20g01220Cucurbita maxima (Rimu)cmacpeB439
Cp4.1LG20g01220Cucurbita moschata (Rifu)cmocpeB059
Cp4.1LG20g01220Cucurbita moschata (Rifu)cmocpeB116
Cp4.1LG20g01220Cucurbita moschata (Rifu)cmocpeB201
Cp4.1LG20g01220Cucurbita moschata (Rifu)cmocpeB404
Cp4.1LG20g01220Wild cucumber (PI 183967)cpecpiB505
Cp4.1LG20g01220Wild cucumber (PI 183967)cpecpiB509
Cp4.1LG20g01220Cucumber (Chinese Long) v2cpecuB505
Cp4.1LG20g01220Cucumber (Chinese Long) v2cpecuB509
Cp4.1LG20g01220Bottle gourd (USVL1VR-Ls)cpelsiB418
Cp4.1LG20g01220Bottle gourd (USVL1VR-Ls)cpelsiB432
Cp4.1LG20g01220Watermelon (Charleston Gray)cpewcgB471
Cp4.1LG20g01220Watermelon (Charleston Gray)cpewcgB475
Cp4.1LG20g01220Watermelon (97103) v1cpewmB523
Cp4.1LG20g01220Watermelon (97103) v1cpewmB529
Cp4.1LG20g01220Melon (DHL92) v3.5.1cpemeB478
Cp4.1LG20g01220Melon (DHL92) v3.5.1cpemeB483
Cp4.1LG20g01220Cucumber (Gy14) v2cgybcpeB069
Cp4.1LG20g01220Cucumber (Gy14) v2cgybcpeB073
Cp4.1LG20g01220Melon (DHL92) v3.6.1cpemedB560
Cp4.1LG20g01220Melon (DHL92) v3.6.1cpemedB568
Cp4.1LG20g01220Silver-seed gourdcarcpeB0544
Cp4.1LG20g01220Silver-seed gourdcarcpeB0647
Cp4.1LG20g01220Silver-seed gourdcarcpeB0725
Cp4.1LG20g01220Silver-seed gourdcarcpeB0846
Cp4.1LG20g01220Cucumber (Chinese Long) v3cpecucB0623
Cp4.1LG20g01220Cucumber (Chinese Long) v3cpecucB0627