Cp4.1LG19g03350 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g03350
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA polymerase, beta-like region
LocationCp4.1LG19 : 2947131 .. 2947385 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATAAACTCTACAATCGTCACAGCCGTACACCCAAAAAGAAGAACAATCAGCTTTGCAAACGGAACAGCAGCCAGCAGAGAGCTTGTGGAGCCTCAACTTATGGGTGGGGTCAATGACATGGCGCAGGCTCTTGGGGAGGTGGGTGCAATATGGATGGACGTGGAAATGGCAGTGGTTGCAGCCGTAGAAATCGCCGTCGATGGATTCACGGCAAACGTCACAAATCCGATGCGTACGCGACGGAACTAG

mRNA sequence

ATGAACATAAACTCTACAATCGTCACAGCCGTACACCCAAAAAGAAGAACAATCAGCTTTGCAAACGGAACAGCAGCCAGCAGAGAGCTTGTGGAGCCTCAACTTATGGGTGGGGTCAATGACATGGCGCAGGCTCTTGGGGAGGTGGGTGCAATATGGATGGACGTGGAAATGGCAGTGGTTGCAGCCGTAGAAATCGCCGTCGATGGATTCACGGCAAACGTCACAAATCCGATGCGTACGCGACGGAACTAG

Coding sequence (CDS)

ATGAACATAAACTCTACAATCGTCACAGCCGTACACCCAAAAAGAAGAACAATCAGCTTTGCAAACGGAACAGCAGCCAGCAGAGAGCTTGTGGAGCCTCAACTTATGGGTGGGGTCAATGACATGGCGCAGGCTCTTGGGGAGGTGGGTGCAATATGGATGGACGTGGAAATGGCAGTGGTTGCAGCCGTAGAAATCGCCGTCGATGGATTCACGGCAAACGTCACAAATCCGATGCGTACGCGACGGAACTAG

Protein sequence

MNINSTIVTAVHPKRRTISFANGTAASRELVEPQLMGGVNDMAQALGEVGAIWMDVEMAVVAAVEIAVDGFTANVTNPMRTRRN
Homology
[Close]
BLAST of Cp4.1LG19g03350 vs. TrEMBL
Match: A0A0A0KXM9_CUCSA (DNA polymerase, beta-like region OS=Cucumis sativus GN=Csa_4G297430 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-14
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 1   MNINSTIVTAVHPKRRTISFANGTAASRELVEPQLMGGVNDMAQALGEVGAIWMDVEMAV 60
           MNI+ST V A++P+RRTI FAN  +A  EL E + M  V+++A+ L E+GA WMD+E+AV
Sbjct: 60  MNIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAV 119

Query: 61  VAAVEIAVDGFTANVTNPM 80
           +AAVE AVDGFTA++   M
Sbjct: 120 IAAVEHAVDGFTADIAAAM 138

[Close]
BLAST of Cp4.1LG19g03350 vs. NCBI nr
Match: gi|700199135|gb|KGN54293.1| (DNA polymerase, beta-like region [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 6.3e-14
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 1   MNINSTIVTAVHPKRRTISFANGTAASRELVEPQLMGGVNDMAQALGEVGAIWMDVEMAV 60
           MNI+ST V A++P+RRTI FAN  +A  EL E + M  V+++A+ L E+GA WMD+E+AV
Sbjct: 60  MNIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAV 119

Query: 61  VAAVEIAVDGFTANVTNPM 80
           +AAVE AVDGFTA++   M
Sbjct: 120 IAAVEHAVDGFTADIAAAM 138

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g03350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g03350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXM9_CUCSA4.4e-1455.70DNA polymerase, beta-like region OS=Cucumis sativus GN=Csa_4G297430 PE=4 SV=1[more]
BLAST of Cp4.1LG19g03350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g03350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199135|gb|KGN54293.1|6.3e-1455.70DNA polymerase, beta-like region [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g03350.1Cp4.1LG19g03350.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g03350Cucurbita pepo (Zucchini)cpecpeB084
Cp4.1LG19g03350Cucurbita pepo (Zucchini)cpecpeB382
Cp4.1LG19g03350Cucurbita pepo (Zucchini)cpecpeB416
Cp4.1LG19g03350Cucurbita pepo (Zucchini)cpecpeB429
Cp4.1LG19g03350Cucumber (Gy14) v1cgycpeB0099
Cp4.1LG19g03350Cucumber (Gy14) v1cgycpeB0486
Cp4.1LG19g03350Cucurbita maxima (Rimu)cmacpeB278
Cp4.1LG19g03350Cucurbita maxima (Rimu)cmacpeB668
Cp4.1LG19g03350Cucurbita maxima (Rimu)cmacpeB829
Cp4.1LG19g03350Cucurbita maxima (Rimu)cmacpeB880
Cp4.1LG19g03350Cucurbita moschata (Rifu)cmocpeB240
Cp4.1LG19g03350Cucurbita moschata (Rifu)cmocpeB619
Cp4.1LG19g03350Cucurbita moschata (Rifu)cmocpeB782
Cp4.1LG19g03350Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g03350Wild cucumber (PI 183967)cpecpiB481
Cp4.1LG19g03350Wild cucumber (PI 183967)cpecpiB497
Cp4.1LG19g03350Cucumber (Chinese Long) v2cpecuB480
Cp4.1LG19g03350Cucumber (Chinese Long) v2cpecuB496
Cp4.1LG19g03350Bottle gourd (USVL1VR-Ls)cpelsiB396
Cp4.1LG19g03350Bottle gourd (USVL1VR-Ls)cpelsiB404
Cp4.1LG19g03350Watermelon (Charleston Gray)cpewcgB422
Cp4.1LG19g03350Watermelon (Charleston Gray)cpewcgB432
Cp4.1LG19g03350Watermelon (97103) v1cpewmB474
Cp4.1LG19g03350Watermelon (97103) v1cpewmB485
Cp4.1LG19g03350Melon (DHL92) v3.5.1cpemeB442
Cp4.1LG19g03350Melon (DHL92) v3.5.1cpemeB460
Cp4.1LG19g03350Cucumber (Gy14) v2cgybcpeB373
Cp4.1LG19g03350Cucumber (Gy14) v2cgybcpeB532
Cp4.1LG19g03350Cucumber (Gy14) v2cgybcpeB812
Cp4.1LG19g03350Melon (DHL92) v3.6.1cpemedB522
Cp4.1LG19g03350Melon (DHL92) v3.6.1cpemedB525
Cp4.1LG19g03350Melon (DHL92) v3.6.1cpemedB541
Cp4.1LG19g03350Silver-seed gourdcarcpeB0227
Cp4.1LG19g03350Silver-seed gourdcarcpeB0790
Cp4.1LG19g03350Silver-seed gourdcarcpeB0830
Cp4.1LG19g03350Silver-seed gourdcarcpeB1390
Cp4.1LG19g03350Cucumber (Chinese Long) v3cpecucB0594
Cp4.1LG19g03350Cucumber (Chinese Long) v3cpecucB0611
Cp4.1LG19g03350Cucumber (Chinese Long) v3cpecucB0621
Cp4.1LG19g03350Wax gourdcpewgoB0591
Cp4.1LG19g03350Wax gourdcpewgoB0608