Cp4.1LG19g02600 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g02600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptionsigma factor binding protein 1
LocationCp4.1LG19 : 2163376 .. 2163876 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGCGGCGGCGGCGGCGGCAACCGCAACGACCACACATCTCTCGGCGGCGTCCGCCGACGAAAGCCGACGAAGAAAACAAACCAACCCAACAACAAAAAGAAACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACCCCTCTAAGTTCCACTCCTCCGACGTAGACGCCGGAGCCACCCCCGACCTCCTCCACAGCACGGCCGCCGCCGCCGCCCAGGACTATGATAGTCTAACGATGAATAATAATATCCCTACTACACTTGGTGTTGAGCTGCCGGCCGAGGACTACCTTCTTGGTAGCTTTTATGATGACTTTGACGACCTGATTCTTCCTCCTCCACTCATCGGAAACTTCTCCGAATTTCTACCAGCGGCTGAGGCGGCGGCGGCGGCGGTGATGTATGAATCTTATGCAATGTGA

mRNA sequence

ATGGACGGCGGCGGCGGCGGCGGCAACCGCAACGACCACACATCTCTCGGCGGCGTCCGCCGACGAAAGCCGACGAAGAAAACAAACCAACCCAACAACAAAAAGAAACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACCCCTCTAAGTTCCACTCCTCCGACGTAGACGCCGGAGCCACCCCCGACCTCCTCCACAGCACGGCCGCCGCCGCCGCCCAGGACTATGATAGTCTAACGATGAATAATAATATCCCTACTACACTTGGTGTTGAGCTGCCGGCCGAGGACTACCTTCTTGGTAGCTTTTATGATGACTTTGACGACCTGATTCTTCCTCCTCCACTCATCGGAAACTTCTCCGAATTTCTACCAGCGGCTGAGGCGGCGGCGGCGGCGGTGATGTATGAATCTTATGCAATGTGA

Coding sequence (CDS)

ATGGACGGCGGCGGCGGCGGCGGCAACCGCAACGACCACACATCTCTCGGCGGCGTCCGCCGACGAAAGCCGACGAAGAAAACAAACCAACCCAACAACAAAAAGAAACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACCCCTCTAAGTTCCACTCCTCCGACGTAGACGCCGGAGCCACCCCCGACCTCCTCCACAGCACGGCCGCCGCCGCCGCCCAGGACTATGATAGTCTAACGATGAATAATAATATCCCTACTACACTTGGTGTTGAGCTGCCGGCCGAGGACTACCTTCTTGGTAGCTTTTATGATGACTTTGACGACCTGATTCTTCCTCCTCCACTCATCGGAAACTTCTCCGAATTTCTACCAGCGGCTGAGGCGGCGGCGGCGGCGGTGATGTATGAATCTTATGCAATGTGA

Protein sequence

MDGGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDVDAGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPAEDYLLGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYESYAM
Homology
[Close]
BLAST of Cp4.1LG19g02600 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-07
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 1 

Query: 22 RKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDV 81
          RK  K+  +  +  KPIKV YISNPM+V+T ASKF  LVQELTGQDA    P   +S   
Sbjct: 24 RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 82 D 83
          D
Sbjct: 84 D 84

[Close]
BLAST of Cp4.1LG19g02600 vs. Swiss-Prot
Match: SIB2_ARATH (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1 

Query: 22 RKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQD-ADF-PDPSKFHSS 81
          R P K+  +     KPIKV YISNPM+V+T  SKF  LVQELTGQD AD  P P+ F + 
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

[Close]
BLAST of Cp4.1LG19g02600 vs. TrEMBL
Match: A0A0A0L3J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.6e-38
Identity = 105/169 (62.13%), Postives = 124/169 (73.37%), Query Frame = 1 

Query: 1   MDGGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNK-KKPIKVVYISNPMKVKTSASKFMAL 60
           MD G   G+  DH +L  V RRKPTKKT QP N+ KKPIKVVYISNPMKV+TSAS FMAL
Sbjct: 1   MDAGTATGS--DHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMAL 60

Query: 61  VQELTGQDADFPDPSKFHSSDV-DAGATPDLLHSTAAAAAQD--YDSLTMNNNIPTTLGV 120
           VQELTGQDADFPDPSKF  S V D  A+ D L++T ++  +D    +L +N+N  ++L  
Sbjct: 61  VQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSN-NSSLVD 120

Query: 121 ELPAEDYLLGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYESYA 166
           E+PAED +LGSFYDDFDDLI P P+IGNFS  LP   A  AAV+YES A
Sbjct: 121 EVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP---APVAAVVYESNA 163

[Close]
BLAST of Cp4.1LG19g02600 vs. TrEMBL
Match: W9R567_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 1 

Query: 9   NRNDHTSLGGVRRRKPTKKT--NQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQ 68
           N N  TSL    +RKPTKKT  N    K +P+KVVYISNPMK+KTSAS+F ALVQELTGQ
Sbjct: 4   NSNVLTSL----QRKPTKKTSANNKTKKTRPVKVVYISNPMKIKTSASEFRALVQELTGQ 63

Query: 69  DADFPDPSKFHSSDVD--AGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPAEDYL 128
           DA+FPDP+KF +++ +   G    +      + +Q+  +   NN+  TT           
Sbjct: 64  DAEFPDPTKFLATNGEDQVGVDSTVKIGGDHSNSQEQGATESNNSSTTTT---------- 123

Query: 129 LGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYES 164
             S Y+  DD +  P ++ +F   +    +A A+V Y+S
Sbjct: 124 --SRYEALDDDVFMPQMMESFEAGI-FPSSATASVWYDS 145

[Close]
BLAST of Cp4.1LG19g02600 vs. TrEMBL
Match: A0A068ULZ1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028988001 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 1 

Query: 26  KKTN-QPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDVDAG 85
           KKTN QP NKKKP+KVVYISNPMKVKTSAS+F ALVQELTGQDAD PDP+K+  +D   G
Sbjct: 10  KKTNKQPKNKKKPVKVVYISNPMKVKTSASEFRALVQELTGQDADMPDPTKYSDTDSVGG 69

Query: 86  ATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPAEDYLLGSFYDDFDDLILPP 140
           +  + + ST     +D D +     +     +   A+  + G+   + DDL+  P
Sbjct: 70  SCQEEV-STELKTMED-DQVVQQPLVQPKNEMPERADCNIYGTCDREDDDLLYMP 122

[Close]
BLAST of Cp4.1LG19g02600 vs. TrEMBL
Match: A0A059DHW1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02242 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 1 

Query: 16  LGGVRRRKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSK 75
           L  +++RKPTK++     K KPIKVVYISNPM+VKTSAS+F ALVQ+LTG+DA+FPDP+K
Sbjct: 5   LCSMQKRKPTKRSKP---KSKPIKVVYISNPMRVKTSASQFRALVQKLTGRDAEFPDPAK 64

Query: 76  FHSSDVDAGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVE--------LPAEDY--LL 135
           FH SD D G       +   AA  D        ++P    V+         P+ D+  L 
Sbjct: 65  FHGSDPD-GVGAAAPRAVVDAADDDVVEPGRRLSLPKVGSVQDLHHHHQNHPSGDHGRLG 124

Query: 136 GSFYDDFDDLILPPPL 142
              Y+ FDD+  P  L
Sbjct: 125 AGNYEPFDDVFTPQML 136

[Close]
BLAST of Cp4.1LG19g02600 vs. TrEMBL
Match: A0A061EVV1_THECC (VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_024241 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 59/143 (41.26%), Postives = 80/143 (55.94%), Query Frame = 1 

Query: 15  SLGGVRRRKPTKK--TNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPD 74
           SLG ++  K  KK  + +  N  KPIKVVYISNPMKVKTSASKF ALVQELTGQDA+ PD
Sbjct: 4   SLGSLQHSKAAKKAKSKKKKNNNKPIKVVYISNPMKVKTSASKFRALVQELTGQDAELPD 63

Query: 75  PSKF-HSSDVDAGA---TPDLLHSTAAAAAQDY----DSLTMNNNIPTTLGVELPAEDY- 134
           P+KF  + D D G+    PD + ++    A +     D    ++  PT    ++P E + 
Sbjct: 64  PTKFTDTDDDDVGSNQKVPDAVKNSTDDHALEVPRVGDQAVHHHEQPTRAHHDVPFETFD 123

Query: 135 --LLGSFYDDFDDLILPPPLIGN 145
                    +FD ++   P + N
Sbjct: 124 EVFTPQMLREFDRVLASEPFLMN 146

[Close]
BLAST of Cp4.1LG19g02600 vs. TAIR10
Match: AT3G56710.1 (AT3G56710.1 sigma factor binding protein 1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 1 

Query: 22 RKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDV 81
          RK  K+  +  +  KPIKV YISNPM+V+T ASKF  LVQELTGQDA    P   +S   
Sbjct: 24 RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 82 D 83
          D
Sbjct: 84 D 84

[Close]
BLAST of Cp4.1LG19g02600 vs. TAIR10
Match: AT2G41180.1 (AT2G41180.1 VQ motif-containing protein)

HSP 1 Score: 54.7 bits (130), Expect = 6.4e-08
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1 

Query: 22 RKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQD-ADF-PDPSKFHSS 81
          R P K+  +     KPIKV YISNPM+V+T  SKF  LVQELTGQD AD  P P+ F + 
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

[Close]
BLAST of Cp4.1LG19g02600 vs. NCBI nr
Match: gi|778694743|ref|XP_011653858.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 9.5e-38
Identity = 105/169 (62.13%), Postives = 124/169 (73.37%), Query Frame = 1 

Query: 1   MDGGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNK-KKPIKVVYISNPMKVKTSASKFMAL 60
           MD G   G+  DH +L  V RRKPTKKT QP N+ KKPIKVVYISNPMKV+TSAS FMAL
Sbjct: 1   MDAGTATGS--DHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMAL 60

Query: 61  VQELTGQDADFPDPSKFHSSDV-DAGATPDLLHSTAAAAAQD--YDSLTMNNNIPTTLGV 120
           VQELTGQDADFPDPSKF  S V D  A+ D L++T ++  +D    +L +N+N  ++L  
Sbjct: 61  VQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSN-NSSLVD 120

Query: 121 ELPAEDYLLGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYESYA 166
           E+PAED +LGSFYDDFDDLI P P+IGNFS  LP   A  AAV+YES A
Sbjct: 121 EVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP---APVAAVVYESNA 163

[Close]
BLAST of Cp4.1LG19g02600 vs. NCBI nr
Match: gi|659111355|ref|XP_008455708.1| (PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 3.4e-35
Identity = 102/169 (60.36%), Postives = 119/169 (70.41%), Query Frame = 1 

Query: 1   MDGGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNK-KKPIKVVYISNPMKVKTSASKFMAL 60
           MD G   GN N  T L  V RRKP KKT Q N K KKPIKVVYISNPMKV+TSAS+FMAL
Sbjct: 20  MDAGAATGN-NPRT-LDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMAL 79

Query: 61  VQELTGQDADFPDPSKFHSSDV-DAGATPDLLHSTAAAAAQD--YDSLTMNNNIPTTLGV 120
           VQELTGQDADFPDPSKF  S V D  A+ D L++T +    D    +L +N+N P+ +  
Sbjct: 80  VQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVD- 139

Query: 121 ELPAEDYLLGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYESYA 166
           ++PAED +LGSFYDDFDDLI PPP++GN S  LP      AAV+YES A
Sbjct: 140 DVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP---GPMAAVVYESNA 182

[Close]
BLAST of Cp4.1LG19g02600 vs. NCBI nr
Match: gi|703074146|ref|XP_010089743.1| (hypothetical protein L484_013937 [Morus notabilis])

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 1 

Query: 9   NRNDHTSLGGVRRRKPTKKT--NQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQ 68
           N N  TSL    +RKPTKKT  N    K +P+KVVYISNPMK+KTSAS+F ALVQELTGQ
Sbjct: 4   NSNVLTSL----QRKPTKKTSANNKTKKTRPVKVVYISNPMKIKTSASEFRALVQELTGQ 63

Query: 69  DADFPDPSKFHSSDVD--AGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPAEDYL 128
           DA+FPDP+KF +++ +   G    +      + +Q+  +   NN+  TT           
Sbjct: 64  DAEFPDPTKFLATNGEDQVGVDSTVKIGGDHSNSQEQGATESNNSSTTTT---------- 123

Query: 129 LGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYES 164
             S Y+  DD +  P ++ +F   +    +A A+V Y+S
Sbjct: 124 --SRYEALDDDVFMPQMMESFEAGI-FPSSATASVWYDS 145

[Close]
BLAST of Cp4.1LG19g02600 vs. NCBI nr
Match: gi|661886847|emb|CDP09565.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 1 

Query: 26  KKTN-QPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDVDAG 85
           KKTN QP NKKKP+KVVYISNPMKVKTSAS+F ALVQELTGQDAD PDP+K+  +D   G
Sbjct: 10  KKTNKQPKNKKKPVKVVYISNPMKVKTSASEFRALVQELTGQDADMPDPTKYSDTDSVGG 69

Query: 86  ATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPAEDYLLGSFYDDFDDLILPP 140
           +  + + ST     +D D +     +     +   A+  + G+   + DDL+  P
Sbjct: 70  SCQEEV-STELKTMED-DQVVQQPLVQPKNEMPERADCNIYGTCDREDDDLLYMP 122

[Close]
BLAST of Cp4.1LG19g02600 vs. NCBI nr
Match: gi|702247028|ref|XP_010056024.1| (PREDICTED: uncharacterized protein LOC104444112 [Eucalyptus grandis])

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 1 

Query: 16  LGGVRRRKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSK 75
           L  +++RKPTK++     K KPIKVVYISNPM+VKTSAS+F ALVQ+LTG+DA+FPDP+K
Sbjct: 5   LCSMQKRKPTKRSKP---KSKPIKVVYISNPMRVKTSASQFRALVQKLTGRDAEFPDPAK 64

Query: 76  FHSSDVDAGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVE--------LPAEDY--LL 135
           FH SD D G       +   AA  D        ++P    V+         P+ D+  L 
Sbjct: 65  FHGSDPD-GVGAAAPRAVVDAADDDVVEPGRRLSLPKVGSVQDLHHHHQNHPSGDHGRLG 124

Query: 136 GSFYDDFDDLILPPPL 142
              Y+ FDD+  P  L
Sbjct: 125 AGNYEPFDDVFTPQML 136

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g02600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SIB1_ARATH2.3e-0754.10Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE... [more]
SIB2_ARATH1.1e-0654.84Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE... [more]
BLAST of Cp4.1LG19g02600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3J8_CUCSA6.6e-3862.13Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431960 PE=4 SV=1[more]
W9R567_9ROSA1.3e-1440.88Uncharacterized protein OS=Morus notabilis GN=L484_013937 PE=4 SV=1[more]
A0A068ULZ1_COFCA1.8e-1448.70Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028988001 PE=4 SV=1[more]
A0A059DHW1_EUCGR2.3e-1444.12Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02242 PE=4 SV=1[more]
A0A061EVV1_THECC1.9e-1341.26VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_024241 PE=4 SV=1[more]
BLAST of Cp4.1LG19g02600 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G56710.11.3e-0854.10 sigma factor binding protein 1[more]
AT2G41180.16.4e-0854.84 VQ motif-containing protein[more]
BLAST of Cp4.1LG19g02600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778694743|ref|XP_011653858.1|9.5e-3862.13PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis sativus][more]
gi|659111355|ref|XP_008455708.1|3.4e-3560.36PREDICTED: sigma factor binding protein 2, chloroplastic-like [Cucumis melo][more]
gi|703074146|ref|XP_010089743.1|1.9e-1440.88hypothetical protein L484_013937 [Morus notabilis][more]
gi|661886847|emb|CDP09565.1|2.5e-1448.70unnamed protein product [Coffea canephora][more]
gi|702247028|ref|XP_010056024.1|3.3e-1444.12PREDICTED: uncharacterized protein LOC104444112 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008889VQ
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g02600.1Cp4.1LG19g02600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 43..68
score: 4.3
NoneNo IPR availablePANTHERPTHR33624FAMILY NOT NAMEDcoord: 8..151
score: 2.6
NoneNo IPR availablePANTHERPTHR33624:SF2SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATEDcoord: 8..151
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g02600Cucumber (Gy14) v2cgybcpeB521
Cp4.1LG19g02600Melon (DHL92) v3.6.1cpemedB545
Cp4.1LG19g02600Silver-seed gourdcarcpeB0830
Cp4.1LG19g02600Cucumber (Chinese Long) v3cpecucB0599
Cp4.1LG19g02600Wax gourdcpewgoB0612
Cp4.1LG19g02600Cucumber (Gy14) v1cgycpeB0106
Cp4.1LG19g02600Cucurbita maxima (Rimu)cmacpeB672
Cp4.1LG19g02600Cucurbita maxima (Rimu)cmacpeB880
Cp4.1LG19g02600Cucurbita moschata (Rifu)cmocpeB621
Cp4.1LG19g02600Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g02600Wild cucumber (PI 183967)cpecpiB488
Cp4.1LG19g02600Cucumber (Chinese Long) v2cpecuB487
Cp4.1LG19g02600Bottle gourd (USVL1VR-Ls)cpelsiB391
Cp4.1LG19g02600Melon (DHL92) v3.5.1cpemeB461