Cp4.1LG19g01370 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g01370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger CCCH domain-containing protein
LocationCp4.1LG19 : 987913 .. 989059 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTAGTTCACTTGTTTGGCAGGGTAACTTTTCAACAGAATAGAAAAGGGGAGAAAATAGAAATTGTCTTTTATTGTTTTCATGTTTTGTTACTGTTTGTATGATCATTAGTCATCGTATGAGTATATCTTGGTGCATGGCTTGGAGGGGGAGATTGATTGGGGAGGGGATTGATATATTTGCAAGTTCGTTCTTGTGGGGCTGCTGTTTTTATAGTTTCCTTCTTTGTTTTGTATGCTGTATGTACTGTCTACAGAATAGTCTGTGTTTAGATTTATGATTTTCCGAGGAAGGACTGTATTTGTTCTTGTTTTGCTTGTGTTTTGCTCGTGTTTTGTGTCTTGGTTTGGATGATCTTATAGGTGTGTTTATCTTCCTGGATTTCAGTACTGCTGGGTGTCCTTTTGGTGAAAGCTGCCATTTCTTGCATCACGTTCCTGGTGGTTATAATGTTGTGGCTCAAATGATGAATCTCCCACCTGTTGGTTCTCAACCGTCCAGAAATATGGCTGCCCCGCCTTCGGTCACCAATGGCGGGTCCTCTGCTCCGTCCCAAGTCAAAACTCGCATGTGCAACAAATTCAACACTGCCGAAGGCTGCAAGTTTGGCGATAAATGCAACTTTGCTCATGGAGAGTGGGAACTTGGGAGGCCTCCATCTCACGATAATCCCCGTGCTATGGGAGGACATATGGTTGGTCGAATGGGTGGCCGAATGGACCTGCCACAACCAGGTCCTGCTGCAAGCTTTGGTGCTTCAGCTACAGCGAAAATCAGTATAGATGCCTCCCTTGCAGGAGCAATCATCGGCAAGGGTGGGATCAACTCGAAACAGATTTGTCGCCAAACGGGTGCCAAACTCTCCATCAGGGACCACGAATCAGACACAAATCTCAGAAACATAGAACTGGAGGGTACTTTTGAGCAAATTAACGAAGCAAGTGCAATGGTGAGAGAGCTTATTATTACGGTATCAATGGCAGGACCCGGCAAAGCCCCCGGCGCGATGGGAGGAGGTCCCGCTCCTTCAGGTAGCAACTATAAAACAAAGATGTGTGATAATTTTGCAAAAGGTTCTTGTACTTTTGGTGAGAGATGCCATTTTGCACACGGGGCGGCCGAGTTACGCAAGTCTGGAGTATGA

mRNA sequence

ATGGGTGTGTTTATCTTCCTGGATTTCAGTACTGCTGGGTGTCCTTTTGGTGAAAGCTGCCATTTCTTGCATCACGTTCCTGGTGGTTATAATGTTGTGGCTCAAATGATGAATCTCCCACCTGTTGGTTCTCAACCGTCCAGAAATATGGCTGCCCCGCCTTCGGTCACCAATGGCGGGTCCTCTGCTCCGTCCCAAGTCAAAACTCGCATGTGCAACAAATTCAACACTGCCGAAGGCTGCAAGTTTGGCGATAAATGCAACTTTGCTCATGGAGAGTGGGAACTTGGGAGGCCTCCATCTCACGATAATCCCCGTGCTATGGGAGGACATATGGTTGGTCGAATGGGTGGCCGAATGGACCTGCCACAACCAGGTCCTGCTGCAAGCTTTGGTGCTTCAGCTACAGCGAAAATCAGTATAGATGCCTCCCTTGCAGGAGCAATCATCGGCAAGGGTGGGATCAACTCGAAACAGATTTGTCGCCAAACGGGTGCCAAACTCTCCATCAGGGACCACGAATCAGACACAAATCTCAGAAACATAGAACTGGAGGGTACTTTTGAGCAAATTAACGAAGCAAGTGCAATGGTGAGAGAGCTTATTATTACGGTATCAATGGCAGGACCCGGCAAAGCCCCCGGCGCGATGGGAGGAGGTCCCGCTCCTTCAGGTAGCAACTATAAAACAAAGATGTGTGATAATTTTGCAAAAGGTTCTTGTACTTTTGGTGAGAGATGCCATTTTGCACACGGGGCGGCCGAGTTACGCAAGTCTGGAGTATGA

Coding sequence (CDS)

ATGGGTGTGTTTATCTTCCTGGATTTCAGTACTGCTGGGTGTCCTTTTGGTGAAAGCTGCCATTTCTTGCATCACGTTCCTGGTGGTTATAATGTTGTGGCTCAAATGATGAATCTCCCACCTGTTGGTTCTCAACCGTCCAGAAATATGGCTGCCCCGCCTTCGGTCACCAATGGCGGGTCCTCTGCTCCGTCCCAAGTCAAAACTCGCATGTGCAACAAATTCAACACTGCCGAAGGCTGCAAGTTTGGCGATAAATGCAACTTTGCTCATGGAGAGTGGGAACTTGGGAGGCCTCCATCTCACGATAATCCCCGTGCTATGGGAGGACATATGGTTGGTCGAATGGGTGGCCGAATGGACCTGCCACAACCAGGTCCTGCTGCAAGCTTTGGTGCTTCAGCTACAGCGAAAATCAGTATAGATGCCTCCCTTGCAGGAGCAATCATCGGCAAGGGTGGGATCAACTCGAAACAGATTTGTCGCCAAACGGGTGCCAAACTCTCCATCAGGGACCACGAATCAGACACAAATCTCAGAAACATAGAACTGGAGGGTACTTTTGAGCAAATTAACGAAGCAAGTGCAATGGTGAGAGAGCTTATTATTACGGTATCAATGGCAGGACCCGGCAAAGCCCCCGGCGCGATGGGAGGAGGTCCCGCTCCTTCAGGTAGCAACTATAAAACAAAGATGTGTGATAATTTTGCAAAAGGTTCTTGTACTTTTGGTGAGAGATGCCATTTTGCACACGGGGCGGCCGAGTTACGCAAGTCTGGAGTATGA

Protein sequence

MGVFIFLDFSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVGSQPSRNMAAPPSVTNGGSSAPSQVKTRMCNKFNTAEGCKFGDKCNFAHGEWELGRPPSHDNPRAMGGHMVGRMGGRMDLPQPGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTNLRNIELEGTFEQINEASAMVRELIITVSMAGPGKAPGAMGGGPAPSGSNYKTKMCDNFAKGSCTFGERCHFAHGAAELRKSGV
Homology
[Close]
BLAST of Cp4.1LG19g01370 vs. Swiss-Prot
Match: C3H31_ORYSJ (Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica GN=Os04g0665700 PE=2 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.9e-81
Identity = 163/263 (61.98%), Postives = 187/263 (71.10%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLP-PVGSQPSRNMAAPPSVTNGGSSAP-SQ 68
           FST GCPFGE CHF H VPGGY  VA+ +NL  P    P+R   AP     GG+S P S 
Sbjct: 47  FSTIGCPFGEGCHFSHFVPGGYQAVAKTLNLGNPAVPAPAR---APMDHAAGGNSHPASS 106

Query: 69  VKTRMCNKFNTAEGCKFGDKCNFAHGEWELGRPPSHDNPRAMGGHMVGRMGGRMDLPQPG 128
            KTRMC K+NTAEGCKFGDKC+FAHGE ELG+P    +  AM   M GR GGR + P P 
Sbjct: 107 GKTRMCTKYNTAEGCKFGDKCHFAHGERELGKPAYMSHESAMAPPMGGRYGGRPEPPPPA 166

Query: 129 ----PAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTNLRNI 188
               PA +FGASATAKIS+DASLAG IIGKGG+N+KQICR TG KLSIRDHESD+NL+NI
Sbjct: 167 AMGPPAGNFGASATAKISVDASLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNI 226

Query: 189 ELEGTFEQINEASAMVRELIITVSMAGPGKAPGAMGGGPAPSG-------SNYKTKMCDN 248
           ELEG F+QI +AS MV ELI T+S + P K P     G AP+G       SNYKTK+C+N
Sbjct: 227 ELEGNFDQIKQASNMVGELIATISPSTPAKKPAGSAAGAAPAGRGGPGGRSNYKTKLCEN 286

Query: 249 FAKGSCTFGERCHFAHGAAELRK 259
           F KG+CTFG+RCHFAHG  E RK
Sbjct: 287 FVKGTCTFGDRCHFAHGENEQRK 306

[Close]
BLAST of Cp4.1LG19g01370 vs. Swiss-Prot
Match: C3H14_ORYSJ (Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.2e-79
Identity = 166/270 (61.48%), Postives = 189/270 (70.00%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNL------PPVGSQPSRNMA--APPSVTNGG 68
           FST+GCPFGE CHFLHH PGGY  VA+M NL      PP G  P  N     PP+ T   
Sbjct: 43  FSTSGCPFGEGCHFLHHFPGGYQAVAKMTNLGGPAIAPPPGRMPMGNAVPDGPPTPT--- 102

Query: 69  SSAPSQVKTRMCNKFNTAEGCKFGDKCNFAHGEWELGRPPSHDN--PRAMGGHMVGRMGG 128
                 VKTR+CNK+NTAEGCK+GDKC+FAHGE ELG+P   D+  P  MG    G    
Sbjct: 103 ------VKTRLCNKYNTAEGCKWGDKCHFAHGERELGKPMLMDSSMPPPMGPRPTGHFA- 162

Query: 129 RMDLPQPGPA----ASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHE 188
               P P PA    ASFGASATAKIS+DASLAG IIG+GG+N+KQI R TGAKL+IRDHE
Sbjct: 163 --PPPMPSPAMSTPASFGASATAKISVDASLAGGIIGRGGVNTKQISRVTGAKLAIRDHE 222

Query: 189 SDTNLRNIELEGTFEQINEASAMVRELIITVSMAGP--GKAP---GAMGGGPAPSGSNYK 248
           SDTNL+NIELEGTF+QI  ASAMVRELI+++    P  GK P      GGGP   GSN+K
Sbjct: 223 SDTNLKNIELEGTFDQIKNASAMVRELIVSIGGGAPPQGKKPVGGSHRGGGP---GSNFK 282

Query: 249 TKMCDNFAKGSCTFGERCHFAHGAAELRKS 260
           TK+C+NF KGSCTFG+RCHFAHG  ELRKS
Sbjct: 283 TKLCENFTKGSCTFGDRCHFAHGENELRKS 297

[Close]
BLAST of Cp4.1LG19g01370 vs. Swiss-Prot
Match: C3H44_ORYSJ (Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica GN=Os06g0618100 PE=2 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 4.9e-73
Identity = 157/262 (59.92%), Postives = 183/262 (69.85%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVGSQPSRNMAAPPSVTNGGSSAP---- 68
           FST+GCPFG SCHFLH+ PGGY   A+M       S     +AAPP     G  AP    
Sbjct: 42  FSTSGCPFGSSCHFLHNFPGGYQAAAKMT------SHGGTAVAAPPGRMPLGPGAPNGPP 101

Query: 69  -SQVKTRMCNKFNTAEGCKFGDKCNFAHGEWELGRPPSHDNPRAMGGHMVGRMGGRMDLP 128
            S VKTRMCNK+NTAEGCK+G KC+FAHGE ELG+P   DN      H +G M      P
Sbjct: 102 TSSVKTRMCNKYNTAEGCKWGSKCHFAHGERELGKPMLLDNSMP---HPMGSMPFEAP-P 161

Query: 129 QPGP----AASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTNL 188
            PGP     ++FGASATAKIS+DASLAG IIGKGG N+K I R TGAKL+IRD+ES+ NL
Sbjct: 162 MPGPDIVPPSTFGASATAKISVDASLAGGIIGKGGTNTKHISRMTGAKLAIRDNESNPNL 221

Query: 189 RNIELEGTFEQINEASAMVRELIITVS-MAGPGKAP--GAMGGGPAPSGSNYKTKMCDNF 248
           +NIELEGTF+QI  ASAMV ELI+ +S  A P K P  G+  GGP   GSN+KTK+C+NF
Sbjct: 222 KNIELEGTFDQIKHASAMVTELIVRISGNAPPAKNPGRGSHAGGP---GSNFKTKLCENF 281

Query: 249 AKGSCTFGERCHFAHGAAELRK 259
            KGSCTFG+RCHFAHG +ELRK
Sbjct: 282 NKGSCTFGDRCHFAHGESELRK 290

[Close]
BLAST of Cp4.1LG19g01370 vs. Swiss-Prot
Match: C3H52_ARATH (Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis thaliana GN=At5g06770 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.1e-51
Identity = 119/207 (57.49%), Postives = 141/207 (68.12%), Query Frame = 1 

Query: 68  KTRMCNKFNTAEGCKFGDKCNFAH---GEWELG------RPPSHDNPRAM--GGHMVGRM 127
           K++ C KF +  GC FGD C+F H   G +         RPP     R M   G   GR 
Sbjct: 38  KSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPGGRF 97

Query: 128 GGRMDLPQPGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESD 187
            GR D P  GP + FGAS T+KIS+DASLAGAIIGKGGI+SKQICR+TGAKLSI+DHE D
Sbjct: 98  SGRGD-PGSGPVSIFGAS-TSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERD 157

Query: 188 TNLRNIELEGTFEQINEASAMVRELIITVSMAGPGKAPGAMGG--GPAPSGSNYKTKMCD 247
            NL+ IELEGTFEQIN AS MVRELI      G  K P  +GG  G    GSNYKTK+CD
Sbjct: 158 PNLKIIELEGTFEQINVASGMVRELI---GRLGSVKKPQGIGGPEGKPHPGSNYKTKICD 217

Query: 248 NFAKGSCTFGERCHFAHGAAELRKSGV 262
            ++KG+CT+G+RCHFAHG +ELR+SG+
Sbjct: 218 RYSKGNCTYGDRCHFAHGESELRRSGI 239

[Close]
BLAST of Cp4.1LG19g01370 vs. Swiss-Prot
Match: C3H36_ARATH (Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis thaliana GN=At3g12130 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.4e-50
Identity = 112/212 (52.83%), Postives = 142/212 (66.98%), Query Frame = 1 

Query: 68  KTRMCNKFNTAEGCKFGDKCNFAH---GEWE-------LGRPPSHDNPRAMGGHMVGRMG 127
           K++ C KF +  GC FG+ C+F H   G +        +G P    +    G    GR  
Sbjct: 38  KSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMGPPIPQVSRNMQGSGNGGRFS 97

Query: 128 GRMDLPQPGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDT 187
           GR +   PG  ++FG SATA+ S+DASLAGAIIGKGG++SKQICRQTG KLSI+DHE D 
Sbjct: 98  GRGE-SGPGHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDP 157

Query: 188 NLRNIELEGTFEQINEASAMVRELIITVSMAGPGKAPGAMGGG--------PAPSGSNYK 247
           NL+NI LEGT EQI+EASAMV++LI  ++ A      G +GGG        P P GSN+K
Sbjct: 158 NLKNIVLEGTLEQISEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHP-GSNFK 217

Query: 248 TKMCDNFAKGSCTFGERCHFAHGAAELRKSGV 262
           TK+C+ F+KG+CTFG+RCHFAHG AELRKSG+
Sbjct: 218 TKICERFSKGNCTFGDRCHFAHGEAELRKSGI 247

[Close]
BLAST of Cp4.1LG19g01370 vs. TrEMBL
Match: A0A0A0KZ79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507380 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 3.8e-133
Identity = 241/263 (91.63%), Postives = 247/263 (93.92%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVGSQPSRNMAAPPSVTNGGSSAPSQVK 68
           FSTAGCPFGESCHFLH+VPGGYNVVAQMMNL PVG+QPSRN+AAPPSVTNGG SAPSQVK
Sbjct: 43  FSTAGCPFGESCHFLHYVPGGYNVVAQMMNLAPVGAQPSRNIAAPPSVTNGGPSAPSQVK 102

Query: 69  TRMCNKFNTAEGCKFGDKCNFAHGEWELGRP--PSHDNPRAMGG--------HMVGRMGG 128
           TRMCNK+NTAEGCKFGDKCNFAHGEWELGRP  PSHDNPRAMGG        HMVGRMGG
Sbjct: 103 TRMCNKYNTAEGCKFGDKCNFAHGEWELGRPNPPSHDNPRAMGGGGGGGGGVHMVGRMGG 162

Query: 129 RMDLPQPGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTN 188
           RMDLP PGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESD N
Sbjct: 163 RMDLPPPGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPN 222

Query: 189 LRNIELEGTFEQINEASAMVRELIITVSMAGPGKAPGAMGGGPAPSGSNYKTKMCDNFAK 248
           LRNIELEGTFEQINEASAMVRELIITVSMAGPGKA G MGGGPAP+GSNYKTK+CDNFAK
Sbjct: 223 LRNIELEGTFEQINEASAMVRELIITVSMAGPGKASGGMGGGPAPTGSNYKTKLCDNFAK 282

Query: 249 GSCTFGERCHFAHGAAELRKSGV 262
           GSCTFGERCHFAHGAAELRKSGV
Sbjct: 283 GSCTFGERCHFAHGAAELRKSGV 305

[Close]
BLAST of Cp4.1LG19g01370 vs. TrEMBL
Match: A0A0A0LEG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G808380 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.9e-103
Identity = 195/256 (76.17%), Postives = 219/256 (85.55%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVGSQPSRNMAAPPSVTNGGSSAPSQVK 68
           +ST GCPFGE+CHFLH+VPGGYN VAQMMNLPP    P RNM APP   + GS A   VK
Sbjct: 44  YSTTGCPFGEACHFLHYVPGGYNAVAQMMNLPPAPPAP-RNMGAPPPPMSNGS-ATQAVK 103

Query: 69  TRMCNKFNTAEGCKFGDKCNFAHGEWELGRP--PSHDNPRAMGGHMVGRMGGRMDLPQPG 128
           +RMCNK+N+AEGCKFGDKC+FAH EWELG+P  PSHD+PR+MG H+  R+  RMD   PG
Sbjct: 104 SRMCNKYNSAEGCKFGDKCHFAHAEWELGKPSAPSHDDPRSMG-HIPNRLASRMDAGPPG 163

Query: 129 PAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTNLRNIELEG 188
            AASFGAS+TAKIS+DASLAGAIIGKGGINSKQICR+TGAKLSIRDHESD NLRNIELEG
Sbjct: 164 LAASFGASSTAKISVDASLAGAIIGKGGINSKQICRRTGAKLSIRDHESDPNLRNIELEG 223

Query: 189 TFEQINEASAMVRELIITVSMAGPGK-APGAMGGGPAPSGSNYKTKMCDNFAKGSCTFGE 248
           +F+QI EASAMV+ELI+TVSMAGP K A GA GG   P+G+N+KTK+CDNFAKGSCTFGE
Sbjct: 224 SFDQIKEASAMVQELIVTVSMAGPPKSATGATGGTAGPAGNNFKTKLCDNFAKGSCTFGE 283

Query: 249 RCHFAHGAAELRKSGV 262
           RCHFAHGAAELRKSGV
Sbjct: 284 RCHFAHGAAELRKSGV 296

[Close]
BLAST of Cp4.1LG19g01370 vs. TrEMBL
Match: M5W9V3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009316mg PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 5.4e-103
Identity = 196/256 (76.56%), Postives = 219/256 (85.55%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVGSQPSRNMAAPPSVTNGGSSAPSQVK 68
           FSTAGCPFGESCHFLH+VPGGYN VAQMMNL P   Q SRN+A PPS +NG SS  S VK
Sbjct: 46  FSTAGCPFGESCHFLHYVPGGYNAVAQMMNLAPA-PQASRNIAPPPSNSNGSSS--SAVK 105

Query: 69  TRMCNKFNTAEGCKFGDKCNFAHGEWELGR--PPSHDNPRAMGGHMVGRMGGRMDLPQPG 128
           +R+CNK+N+AEGCKFGDKC+FAHGEWELG+    SHD+PRAMG    GRM   M+ P  G
Sbjct: 106 SRLCNKYNSAEGCKFGDKCHFAHGEWELGKHLAQSHDDPRAMGPG-PGRMTNWMEPPLAG 165

Query: 129 PAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTNLRNIELEG 188
           PA+SFGAS+TAKIS+DASLAGAIIGKGG+NSKQICRQTGAKLSIR+HESD NLRNIELEG
Sbjct: 166 PASSFGASSTAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEG 225

Query: 189 TFEQINEASAMVRELIITVSMAGPGKAP-GAMGGGPAPSGSNYKTKMCDNFAKGSCTFGE 248
           TFEQI +ASAMVRELI+TVSM+GP K P G   G PAP GSNYKTK+CDNF KG+CTFG+
Sbjct: 226 TFEQIQQASAMVRELIVTVSMSGPAKTPGGGAPGAPAPPGSNYKTKLCDNFTKGTCTFGD 285

Query: 249 RCHFAHGAAELRKSGV 262
           RCHFAHGAAELRKSG+
Sbjct: 286 RCHFAHGAAELRKSGM 297

[Close]
BLAST of Cp4.1LG19g01370 vs. TrEMBL
Match: F6HLJ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g06400 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.9e-100
Identity = 189/256 (73.83%), Postives = 211/256 (82.42%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVGSQPSRNMAAPPSVTNGGSSAPSQVK 68
           FST+GCPFGESCHFLH+VPGGYN VAQM N  P+    SRNMA PP     GSS P+ VK
Sbjct: 44  FSTSGCPFGESCHFLHYVPGGYNAVAQMTNQAPILPPASRNMAGPPPPVPNGSSMPA-VK 103

Query: 69  TRMCNKFNTAEGCKFGDKCNFAHGEWELGRP--PSHDNPRAMGGHMVGRMGGRMDLPQPG 128
           ++MCNKFNTAEGCKFGDKC+FAHGEWELG+P  P HD+PRAMG  + GR+ GR++    G
Sbjct: 104 SKMCNKFNTAEGCKFGDKCHFAHGEWELGKPLAPYHDDPRAMGS-IPGRLAGRIEPSPTG 163

Query: 129 PAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTNLRNIELEG 188
           PAASFGASATAKIS+DASLAGAIIGKGG+NSKQICRQTGAKLSIR+H+SD NLRNIELEG
Sbjct: 164 PAASFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIREHDSDPNLRNIELEG 223

Query: 189 TFEQINEASAMVRELIITVS-MAGPGKAPGAMGGGPAPSGSNYKTKMCDNFAKGSCTFGE 248
           TFEQI EASAMVRELI+ +S M G  +     GGG AP  SNYKTK+CDNF KGSCTFGE
Sbjct: 224 TFEQIKEASAMVRELIVNISAMPGHARTTAMPGGGQAPPASNYKTKLCDNFTKGSCTFGE 283

Query: 249 RCHFAHGAAELRKSGV 262
           RCHFAHGA ELRKS +
Sbjct: 284 RCHFAHGAGELRKSAI 297

[Close]
BLAST of Cp4.1LG19g01370 vs. TrEMBL
Match: B9T5D9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0098280 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.9e-100
Identity = 192/257 (74.71%), Postives = 219/257 (85.21%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVGSQPSRNMAAP-PSVTNGGSSAPSQV 68
           FSTAGCPFGESCHFLH+VPGGYN VAQMMNL P  +   RNM AP P++ NG  SAPS V
Sbjct: 43  FSTAGCPFGESCHFLHYVPGGYNAVAQMMNLGPAVTSIPRNMPAPSPAIPNG--SAPSAV 102

Query: 69  KTRMCNKFNTAEGCKFGDKCNFAHGEWELGRP--PSHDNPRAMGGHMVGRMGGRMDLPQP 128
           K+R+CNK+NTAEGCKFGDKCNFAHGEWELG+P  PSHD+PRA  G + GRMGGRM+ P P
Sbjct: 103 KSRLCNKYNTAEGCKFGDKCNFAHGEWELGKPVVPSHDDPRAF-GTIPGRMGGRMEPPPP 162

Query: 129 GPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTNLRNIELE 188
           G AASFGASATAKIS++ASLAGAIIGKGG+NSKQICRQTGAKLSIR+HE+D N+RNIE E
Sbjct: 163 GSAASFGASATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHETDPNVRNIEFE 222

Query: 189 GTFEQINEASAMVRELIITVSMA-GPGKAPGAMGGGPAPSGSNYKTKMCDNFAKGSCTFG 248
           G+FEQI +ASAMV ELI ++S A    KA G +GG   P GSN+KTK+C+NF+KGSCTFG
Sbjct: 223 GSFEQIKQASAMVSELIASISSANASAKATGLIGGHGHP-GSNFKTKLCENFSKGSCTFG 282

Query: 249 ERCHFAHGAAELRKSGV 262
           +RCHFAHGAAELRKSGV
Sbjct: 283 QRCHFAHGAAELRKSGV 295

[Close]
BLAST of Cp4.1LG19g01370 vs. TAIR10
Match: AT5G06770.1 (AT5G06770.1 KH domain-containing protein / zinc finger (CCCH type) family protein)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-52
Identity = 119/207 (57.49%), Postives = 141/207 (68.12%), Query Frame = 1 

Query: 68  KTRMCNKFNTAEGCKFGDKCNFAH---GEWELG------RPPSHDNPRAM--GGHMVGRM 127
           K++ C KF +  GC FGD C+F H   G +         RPP     R M   G   GR 
Sbjct: 38  KSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPGGRF 97

Query: 128 GGRMDLPQPGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESD 187
            GR D P  GP + FGAS T+KIS+DASLAGAIIGKGGI+SKQICR+TGAKLSI+DHE D
Sbjct: 98  SGRGD-PGSGPVSIFGAS-TSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERD 157

Query: 188 TNLRNIELEGTFEQINEASAMVRELIITVSMAGPGKAPGAMGG--GPAPSGSNYKTKMCD 247
            NL+ IELEGTFEQIN AS MVRELI      G  K P  +GG  G    GSNYKTK+CD
Sbjct: 158 PNLKIIELEGTFEQINVASGMVRELI---GRLGSVKKPQGIGGPEGKPHPGSNYKTKICD 217

Query: 248 NFAKGSCTFGERCHFAHGAAELRKSGV 262
            ++KG+CT+G+RCHFAHG +ELR+SG+
Sbjct: 218 RYSKGNCTYGDRCHFAHGESELRRSGI 239

[Close]
BLAST of Cp4.1LG19g01370 vs. TAIR10
Match: AT3G12130.1 (AT3G12130.1 KH domain-containing protein / zinc finger (CCCH type) family protein)

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-51
Identity = 112/212 (52.83%), Postives = 142/212 (66.98%), Query Frame = 1 

Query: 68  KTRMCNKFNTAEGCKFGDKCNFAH---GEWE-------LGRPPSHDNPRAMGGHMVGRMG 127
           K++ C KF +  GC FG+ C+F H   G +        +G P    +    G    GR  
Sbjct: 38  KSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMGPPIPQVSRNMQGSGNGGRFS 97

Query: 128 GRMDLPQPGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDT 187
           GR +   PG  ++FG SATA+ S+DASLAGAIIGKGG++SKQICRQTG KLSI+DHE D 
Sbjct: 98  GRGE-SGPGHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDP 157

Query: 188 NLRNIELEGTFEQINEASAMVRELIITVSMAGPGKAPGAMGGG--------PAPSGSNYK 247
           NL+NI LEGT EQI+EASAMV++LI  ++ A      G +GGG        P P GSN+K
Sbjct: 158 NLKNIVLEGTLEQISEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHP-GSNFK 217

Query: 248 TKMCDNFAKGSCTFGERCHFAHGAAELRKSGV 262
           TK+C+ F+KG+CTFG+RCHFAHG AELRKSG+
Sbjct: 218 TKICERFSKGNCTFGDRCHFAHGEAELRKSGI 247

[Close]
BLAST of Cp4.1LG19g01370 vs. TAIR10
Match: AT3G19360.1 (AT3G19360.1 Zinc finger (CCCH-type) family protein)

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-09
Identity = 64/221 (28.96%), Postives = 84/221 (38.01%), Query Frame = 1 

Query: 46  PSRNMAAPPSVTNGGSSAPSQVKTRMCNKFNTAEGCKFGDKCNFAHGEWELGRPPSH--- 105
           PS N   PP V  G  +A    KTRMC KF  A  C+ G+ CNFAHG  +L +PPS+   
Sbjct: 89  PSLN---PPPVNKG--TANIFYKTRMCAKFR-AGTCRNGELCNFAHGIEDLRQPPSNWQE 148

Query: 106 ---DNPRAMGGHMVGRMGGRMDLPQPGPAASFGASATAKISIDASLAGAIIGKGGINSKQ 165
                P               + P   P  +       KI +   L              
Sbjct: 149 IVGPPPAGQDRERERERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGD 208

Query: 166 ICRQTGAKLSIRDHESDTNLRNIELEGTFEQINEASAMVRELIITVSMAGPGKAPGAMGG 225
            C      LS +  E    LR   +        +  +     +I V+  G    P  M  
Sbjct: 209 RCNFIHEDLS-KFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNN 268

Query: 226 GPAPSGSNYKTKMCDNF-AKGSCTFGERCHFAHGAAELRKS 260
           G       +KT++C  F   G C FG++CHFAHG AEL  S
Sbjct: 269 GGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNS 302

[Close]
BLAST of Cp4.1LG19g01370 vs. TAIR10
Match: AT1G32360.1 (AT1G32360.1 Zinc finger (CCCH-type) family protein)

HSP 1 Score: 55.8 bits (133), Expect = 4.5e-08
Identity = 40/112 (35.71%), Postives = 51/112 (45.54%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVG-SQPSRNMAAPPSVTNGGSSA---- 68
           ++  GCP+GESC FLH      N  +  ++L P G        +   SV  GGSS+    
Sbjct: 182 YTEEGCPYGESCTFLHD-EASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVV 241

Query: 69  -----------------PSQVKTRMCNKFNTAEGCKFGDKCNFAHGEWELGR 99
                            PS  KTR+CNK+     C FG KC+FAHG  EL R
Sbjct: 242 LGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHR 292

[Close]
BLAST of Cp4.1LG19g01370 vs. NCBI nr
Match: gi|659082915|ref|XP_008442098.1| (PREDICTED: zinc finger CCCH domain-containing protein 36-like [Cucumis melo])

HSP 1 Score: 485.7 bits (1249), Expect = 5.0e-134
Identity = 243/262 (92.75%), Postives = 248/262 (94.66%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVGSQPSRNMAAPPSVTNGGSSAPSQVK 68
           FSTAGCPFGESCHFLH+VPGGYNVVAQMMNL PVG+QPSRN+AAPPSVTNGGSSAPSQVK
Sbjct: 43  FSTAGCPFGESCHFLHYVPGGYNVVAQMMNLAPVGAQPSRNVAAPPSVTNGGSSAPSQVK 102

Query: 69  TRMCNKFNTAEGCKFGDKCNFAHGEWELGRP--PSHDNPRAMGG-------HMVGRMGGR 128
           TRMCNKFNTAEGCKFGDKCNFAHGEWELGRP  PSHDNPRAMGG       HMVGRMGGR
Sbjct: 103 TRMCNKFNTAEGCKFGDKCNFAHGEWELGRPNPPSHDNPRAMGGGGGGGGVHMVGRMGGR 162

Query: 129 MDLPQPGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTNL 188
           MDLP PGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESD NL
Sbjct: 163 MDLPPPGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPNL 222

Query: 189 RNIELEGTFEQINEASAMVRELIITVSMAGPGKAPGAMGGGPAPSGSNYKTKMCDNFAKG 248
           RNIELEGTFEQINEASAMVRELIITVSMAGPGKA G MGGGPAP+GSNYKTK+CDNFAKG
Sbjct: 223 RNIELEGTFEQINEASAMVRELIITVSMAGPGKASGGMGGGPAPTGSNYKTKLCDNFAKG 282

Query: 249 SCTFGERCHFAHGAAELRKSGV 262
           SCTFGERCHFAHGAAELRKSGV
Sbjct: 283 SCTFGERCHFAHGAAELRKSGV 304

[Close]
BLAST of Cp4.1LG19g01370 vs. NCBI nr
Match: gi|449457299|ref|XP_004146386.1| (PREDICTED: zinc finger CCCH domain-containing protein 31-like [Cucumis sativus])

HSP 1 Score: 482.3 bits (1240), Expect = 5.5e-133
Identity = 241/263 (91.63%), Postives = 247/263 (93.92%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVGSQPSRNMAAPPSVTNGGSSAPSQVK 68
           FSTAGCPFGESCHFLH+VPGGYNVVAQMMNL PVG+QPSRN+AAPPSVTNGG SAPSQVK
Sbjct: 43  FSTAGCPFGESCHFLHYVPGGYNVVAQMMNLAPVGAQPSRNIAAPPSVTNGGPSAPSQVK 102

Query: 69  TRMCNKFNTAEGCKFGDKCNFAHGEWELGRP--PSHDNPRAMGG--------HMVGRMGG 128
           TRMCNK+NTAEGCKFGDKCNFAHGEWELGRP  PSHDNPRAMGG        HMVGRMGG
Sbjct: 103 TRMCNKYNTAEGCKFGDKCNFAHGEWELGRPNPPSHDNPRAMGGGGGGGGGVHMVGRMGG 162

Query: 129 RMDLPQPGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTN 188
           RMDLP PGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESD N
Sbjct: 163 RMDLPPPGPAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDPN 222

Query: 189 LRNIELEGTFEQINEASAMVRELIITVSMAGPGKAPGAMGGGPAPSGSNYKTKMCDNFAK 248
           LRNIELEGTFEQINEASAMVRELIITVSMAGPGKA G MGGGPAP+GSNYKTK+CDNFAK
Sbjct: 223 LRNIELEGTFEQINEASAMVRELIITVSMAGPGKASGGMGGGPAPTGSNYKTKLCDNFAK 282

Query: 249 GSCTFGERCHFAHGAAELRKSGV 262
           GSCTFGERCHFAHGAAELRKSGV
Sbjct: 283 GSCTFGERCHFAHGAAELRKSGV 305

[Close]
BLAST of Cp4.1LG19g01370 vs. NCBI nr
Match: gi|449437587|ref|XP_004136573.1| (PREDICTED: zinc finger CCCH domain-containing protein 14 [Cucumis sativus])

HSP 1 Score: 383.6 bits (984), Expect = 2.7e-103
Identity = 195/256 (76.17%), Postives = 219/256 (85.55%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVGSQPSRNMAAPPSVTNGGSSAPSQVK 68
           +ST GCPFGE+CHFLH+VPGGYN VAQMMNLPP    P RNM APP   + GS A   VK
Sbjct: 44  YSTTGCPFGEACHFLHYVPGGYNAVAQMMNLPPAPPAP-RNMGAPPPPMSNGS-ATQAVK 103

Query: 69  TRMCNKFNTAEGCKFGDKCNFAHGEWELGRP--PSHDNPRAMGGHMVGRMGGRMDLPQPG 128
           +RMCNK+N+AEGCKFGDKC+FAH EWELG+P  PSHD+PR+MG H+  R+  RMD   PG
Sbjct: 104 SRMCNKYNSAEGCKFGDKCHFAHAEWELGKPSAPSHDDPRSMG-HIPNRLASRMDAGPPG 163

Query: 129 PAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTNLRNIELEG 188
            AASFGAS+TAKIS+DASLAGAIIGKGGINSKQICR+TGAKLSIRDHESD NLRNIELEG
Sbjct: 164 LAASFGASSTAKISVDASLAGAIIGKGGINSKQICRRTGAKLSIRDHESDPNLRNIELEG 223

Query: 189 TFEQINEASAMVRELIITVSMAGPGK-APGAMGGGPAPSGSNYKTKMCDNFAKGSCTFGE 248
           +F+QI EASAMV+ELI+TVSMAGP K A GA GG   P+G+N+KTK+CDNFAKGSCTFGE
Sbjct: 224 SFDQIKEASAMVQELIVTVSMAGPPKSATGATGGTAGPAGNNFKTKLCDNFAKGSCTFGE 283

Query: 249 RCHFAHGAAELRKSGV 262
           RCHFAHGAAELRKSGV
Sbjct: 284 RCHFAHGAAELRKSGV 296

[Close]
BLAST of Cp4.1LG19g01370 vs. NCBI nr
Match: gi|645271493|ref|XP_008240939.1| (PREDICTED: zinc finger CCCH domain-containing protein 14 [Prunus mume])

HSP 1 Score: 383.3 bits (983), Expect = 3.5e-103
Identity = 197/256 (76.95%), Postives = 219/256 (85.55%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVGSQPSRNMAAPPSVTNGGSSAPSQVK 68
           FSTAGCPFGESCHFLH+VPGGYN VAQMMNL P   Q SRN+A PPS +NG SS  S VK
Sbjct: 46  FSTAGCPFGESCHFLHYVPGGYNAVAQMMNLAPA-PQASRNIAPPPSNSNGSSS--SAVK 105

Query: 69  TRMCNKFNTAEGCKFGDKCNFAHGEWELGR--PPSHDNPRAMGGHMVGRMGGRMDLPQPG 128
           +R+CNK+N+AEGCKFGDKC+FAHGEWELG+    SHD+PRAMG    GRM   M+ P  G
Sbjct: 106 SRLCNKYNSAEGCKFGDKCHFAHGEWELGKHLAQSHDDPRAMGPG-PGRMTNWMEPPLAG 165

Query: 129 PAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTNLRNIELEG 188
           PA+SFGAS+TAKIS+DASLAGAIIGKGG+NSKQICRQTGAKLSIR+HESD NLRNIELEG
Sbjct: 166 PASSFGASSTAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEG 225

Query: 189 TFEQINEASAMVRELIITVSMAGPGKAP-GAMGGGPAPSGSNYKTKMCDNFAKGSCTFGE 248
           TFEQI +ASAMVRELI+TVSM+GP K P G   G PAP GSNYKTK+CDNF KG+CTFGE
Sbjct: 226 TFEQIQQASAMVRELIVTVSMSGPAKTPGGGAPGAPAPPGSNYKTKLCDNFTKGTCTFGE 285

Query: 249 RCHFAHGAAELRKSGV 262
           RCHFAHGAAELRKSG+
Sbjct: 286 RCHFAHGAAELRKSGM 297

[Close]
BLAST of Cp4.1LG19g01370 vs. NCBI nr
Match: gi|595805980|ref|XP_007202376.1| (hypothetical protein PRUPE_ppa009316mg [Prunus persica])

HSP 1 Score: 382.1 bits (980), Expect = 7.8e-103
Identity = 196/256 (76.56%), Postives = 219/256 (85.55%), Query Frame = 1 

Query: 9   FSTAGCPFGESCHFLHHVPGGYNVVAQMMNLPPVGSQPSRNMAAPPSVTNGGSSAPSQVK 68
           FSTAGCPFGESCHFLH+VPGGYN VAQMMNL P   Q SRN+A PPS +NG SS  S VK
Sbjct: 46  FSTAGCPFGESCHFLHYVPGGYNAVAQMMNLAPA-PQASRNIAPPPSNSNGSSS--SAVK 105

Query: 69  TRMCNKFNTAEGCKFGDKCNFAHGEWELGR--PPSHDNPRAMGGHMVGRMGGRMDLPQPG 128
           +R+CNK+N+AEGCKFGDKC+FAHGEWELG+    SHD+PRAMG    GRM   M+ P  G
Sbjct: 106 SRLCNKYNSAEGCKFGDKCHFAHGEWELGKHLAQSHDDPRAMGPG-PGRMTNWMEPPLAG 165

Query: 129 PAASFGASATAKISIDASLAGAIIGKGGINSKQICRQTGAKLSIRDHESDTNLRNIELEG 188
           PA+SFGAS+TAKIS+DASLAGAIIGKGG+NSKQICRQTGAKLSIR+HESD NLRNIELEG
Sbjct: 166 PASSFGASSTAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEG 225

Query: 189 TFEQINEASAMVRELIITVSMAGPGKAP-GAMGGGPAPSGSNYKTKMCDNFAKGSCTFGE 248
           TFEQI +ASAMVRELI+TVSM+GP K P G   G PAP GSNYKTK+CDNF KG+CTFG+
Sbjct: 226 TFEQIQQASAMVRELIVTVSMSGPAKTPGGGAPGAPAPPGSNYKTKLCDNFTKGTCTFGD 285

Query: 249 RCHFAHGAAELRKSGV 262
           RCHFAHGAAELRKSG+
Sbjct: 286 RCHFAHGAAELRKSGM 297

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g01370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H31_ORYSJ2.9e-8161.98Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica GN... [more]
C3H14_ORYSJ1.2e-7961.48Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN... [more]
C3H44_ORYSJ4.9e-7359.92Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica GN... [more]
C3H52_ARATH3.1e-5157.49Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis thaliana GN=At5g067... [more]
C3H36_ARATH3.4e-5052.83Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis thaliana GN=At3g121... [more]
BLAST of Cp4.1LG19g01370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ79_CUCSA3.8e-13391.63Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507380 PE=4 SV=1[more]
A0A0A0LEG5_CUCSA1.9e-10376.17Uncharacterized protein OS=Cucumis sativus GN=Csa_3G808380 PE=4 SV=1[more]
M5W9V3_PRUPE5.4e-10376.56Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009316mg PE=4 SV=1[more]
F6HLJ6_VITVI1.9e-10073.83Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g06400 PE=4 SV=... [more]
B9T5D9_RICCO1.9e-10074.71Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0098280 PE=4 SV=1[more]
BLAST of Cp4.1LG19g01370 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G06770.11.7e-5257.49 KH domain-containing protein / zinc finger (CCCH type) family protei... [more]
AT3G12130.11.9e-5152.83 KH domain-containing protein / zinc finger (CCCH type) family protei... [more]
AT3G19360.13.1e-0928.96 Zinc finger (CCCH-type) family protein[more]
AT1G32360.14.5e-0835.71 Zinc finger (CCCH-type) family protein[more]
BLAST of Cp4.1LG19g01370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082915|ref|XP_008442098.1|5.0e-13492.75PREDICTED: zinc finger CCCH domain-containing protein 36-like [Cucumis melo][more]
gi|449457299|ref|XP_004146386.1|5.5e-13391.63PREDICTED: zinc finger CCCH domain-containing protein 31-like [Cucumis sativus][more]
gi|449437587|ref|XP_004136573.1|2.7e-10376.17PREDICTED: zinc finger CCCH domain-containing protein 14 [Cucumis sativus][more]
gi|645271493|ref|XP_008240939.1|3.5e-10376.95PREDICTED: zinc finger CCCH domain-containing protein 14 [Prunus mume][more]
gi|595805980|ref|XP_007202376.1|7.8e-10376.56hypothetical protein PRUPE_ppa009316mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR004087KH_dom
IPR000571Znf_CCCH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g01370.1Cp4.1LG19g01370.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 64..99
score: 2.4E-14coord: 224..258
score: 1.1E-16coord: 10..25
score: 3.
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 68..93
score: 1.9E-5coord: 228..252
score: 7.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 227..253
score: 1.4E-6coord: 66..93
score: 0.027coord: 5..26
score:
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 66..94
score: 13.713coord: 227..254
score: 16.361coord: 8..27
score: 8
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 65..97
score: 3.4E-8coord: 226..257
score: 7.0
IPR004087K Homology domainSMARTSM00322kh_6coord: 133..203
score: 1.0
IPR004088K Homology domain, type 1GENE3DG3DSA:3.30.1370.10coord: 133..202
score: 5.6
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 136..200
score: 5.3
IPR004088K Homology domain, type 1PROFILEPS50084KH_TYPE_1coord: 134..198
score: 14
IPR004088K Homology domain, type 1unknownSSF54791Eukaryotic type KH-domain (KH-domain type I)coord: 123..204
score: 2.19
NoneNo IPR availablePANTHERPTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINcoord: 65..258
score: 1.2E
NoneNo IPR availablePANTHERPTHR10288:SF154SUBFAMILY NOT NAMEDcoord: 65..258
score: 1.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG19g01370CmaCh07G012530Cucurbita maxima (Rimu)cmacpeB880
Cp4.1LG19g01370CmoCh07G012970Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g01370Csa4G507380Cucumber (Chinese Long) v2cpecuB498
Cp4.1LG19g01370CSPI04G20280Wild cucumber (PI 183967)cpecpiB493
Cp4.1LG19g01370CsaV3_4G030470Cucumber (Chinese Long) v3cpecucB0607
Cp4.1LG19g01370Bhi03G002332Wax gourdcpewgoB0606
Cp4.1LG19g01370CsGy4G018890Cucumber (Gy14) v2cgybcpeB529
Cp4.1LG19g01370Carg12684Silver-seed gourdcarcpeB0400
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g01370Wild cucumber (PI 183967)cpecpiB486
Cp4.1LG19g01370Cucumber (Chinese Long) v2cpecuB485
Cp4.1LG19g01370Bottle gourd (USVL1VR-Ls)cpelsiB392
Cp4.1LG19g01370Watermelon (Charleston Gray)cpewcgB421
Cp4.1LG19g01370Watermelon (Charleston Gray)cpewcgB434
Cp4.1LG19g01370Watermelon (97103) v1cpewmB473
Cp4.1LG19g01370Watermelon (97103) v1cpewmB489
Cp4.1LG19g01370Melon (DHL92) v3.5.1cpemeB450
Cp4.1LG19g01370Melon (DHL92) v3.5.1cpemeB441
Cp4.1LG19g01370Melon (DHL92) v3.6.1cpemedB524
Cp4.1LG19g01370Melon (DHL92) v3.6.1cpemedB533