Cp4.1LG19g01170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g01170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG19 : 970403 .. 971077 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATCATCCACACATTAAGAAACCAAGAAAGGAACAAAAAGGGGAGGAATTTTTCTTTTAAGGTAAAAAAATATTTTAAAAAATGGCGAAGAAGATGACGGCAGTGCTTCTAACGTGCGTTGTGTTGGTATCCGCATTGCAATTCTCCACTGCTGATAGCCCAGCTGAAATGGAGGCCAGATTCAAGTCGTTCTTCGGTGACTTGAGCGGCGTGGAGGCAAAATTTAAGTCGTGTGCTGCAACCTGCGAGAAGGAATGTGTGGCCAAAGGCGAGACCAGTGAATCATGCAAACCAAAGTGTGAGACAGATTGCGGCAAAAAGGAAGTTTCAGGTATATCTTTTTTTTGTCTCTTAAGAAAACGGTAAAATAATTTTTCTCNCTCTTAAGAGAACGGTAAAATAATTTTTCTCAAAAATTTTACACTTTGTGTATTAATGTTAATTTTTGTTGTGCTTATTTTGCAGAGAAGTTTAACATCCATCTAACCTGATGAGATGGAAAGGGAAGGAAGAGCTCAGCATAGTGATCGATTTGGTTTAGAACATCGTTATAATTTATTTAAATAATTCTTGTGAAAGGAATTTTTAAAATTCTCTTTCATTTTTGTAATGTATTTATTTTTTTTTATTATAAAACGTTTCTTTAATATTGTTGGTTTCTTTGATCAACGAAC

mRNA sequence

CAATCATCCACACATTAAGAAACCAAGAAAGGAACAAAAAGGGGAGGAATTTTTCTTTTAAGGTAAAAAAATATTTTAAAAAATGGCGAAGAAGATGACGGCAGTGCTTCTAACGTGCGTTGTGTTGGTATCCGCATTGCAATTCTCCACTGCTGATAGCCCAGCTGAAATGGAGGCCAGATTCAAGTCGTTCTTCGGTGACTTGAGCGGCGTGGAGGCAAAATTTAAGTCGTGTGCTGCAACCTGCGAGAAGGAATGTGTGGCCAAAGGCGAGACCAGTGAATCATGCAAACCAAAGTGTGAGACAGATTGCGGCAAAAAGGAAGTTTCAGAGAAGTTTAACATCCATCTAACCTGATGAGATGGAAAGGGAAGGAAGAGCTCAGCATAGTGATCGATTTGGTTTAGAACATCGTTATAATTTATTTAAATAATTCTTGTGAAAGGAATTTTTAAAATTCTCTTTCATTTTTGTAATGTATTTATTTTTTTTTATTATAAAACGTTTCTTTAATATTGTTGGTTTCTTTGATCAACGAAC

Coding sequence (CDS)

ATGGCGAAGAAGATGACGGCAGTGCTTCTAACGTGCGTTGTGTTGGTATCCGCATTGCAATTCTCCACTGCTGATAGCCCAGCTGAAATGGAGGCCAGATTCAAGTCGTTCTTCGGTGACTTGAGCGGCGTGGAGGCAAAATTTAAGTCGTGTGCTGCAACCTGCGAGAAGGAATGTGTGGCCAAAGGCGAGACCAGTGAATCATGCAAACCAAAGTGTGAGACAGATTGCGGCAAAAAGGAAGTTTCAGAGAAGTTTAACATCCATCTAACCTGA

Protein sequence

MAKKMTAVLLTCVVLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKFKSCAATCEKECVAKGETSESCKPKCETDCGKKEVSEKFNIHLT
Homology
[Close]
BLAST of Cp4.1LG19g01170 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.8e-12
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 1 

Query: 1  MAKKMTAVLLTCVVLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKFKSCAATCEKECV 60
          MAKKM AV L C+V+V++LQF+TA+   E+ +    F       +AK+K+C  TCEKEC+
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKF-------DAKYKACFVTCEKECI 60

Query: 61 AKGETSESCKPKCETDCGKKEVSEKFNIH 90
           +G     C+ KC+ DCG KE ++K +IH
Sbjct: 61 ERGSGHSYCEVKCDEDCGAKEAADKLHIH 82

[Close]
BLAST of Cp4.1LG19g01170 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.3e-10
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1 

Query: 1  MAKKMTAVLLTCVVLVSALQFSTADSP--AEMEARFKSFFGDLSGVEAKFKSCAATCEKE 60
          MA KM A+ L C+V+V+ALQF+ A+    A+ EA+F          +AK+KSC  TCEKE
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKF----------DAKYKSCFETCEKE 60

Query: 61 CVAKGETSESCKPKCETDCGKKEVSEKFNIHL 91
          C+  G     C+ KC+ DC +KE ++K +I L
Sbjct: 61 CLRYGSGQSYCEVKCDEDCDEKEAADKLHIEL 82

[Close]
BLAST of Cp4.1LG19g01170 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-09
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 1 

Query: 1  MAKKMTAVLLTCVVLVSALQFSTA---DSPAEMEARFKSFFGDLSGVEAKFKSCAATCEK 60
          MAKKM AV L C+V+V+ LQF  A   D   + EA+F          +AK+KSC  TCEK
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKF----------DAKYKSCYETCEK 60

Query: 61 ECVAKGETSES-CKPKCETDCGKKEVSEKFNIHL 91
          EC+      ES C+ KC+ DC +KE ++K +I L
Sbjct: 61 ECLRNDTNGESFCEVKCDEDCSEKEAADKLHIEL 84

[Close]
BLAST of Cp4.1LG19g01170 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-09
Identity = 37/91 (40.66%), Postives = 61/91 (67.03%), Query Frame = 1 

Query: 1  MAKKMTAVLLTCVVLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKFKSCAATCEKECV 60
          MAKKM  VLL C+V+++ L+FS  +   E E +++S F      +A++KSC  +CEKEC+
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGE-EKEDKYESKF------DARYKSCYESCEKECL 60

Query: 61 AKGETSES-CKPKCETDCGKKEVSEKFNIHL 91
            G+  +S C+ KC+ DC +KEV++K ++ +
Sbjct: 61 TNGKNGQSYCEVKCDEDCDEKEVADKLHVEV 84

[Close]
BLAST of Cp4.1LG19g01170 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 1 

Query: 3  KKMTAVLLTCVVLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKFKSCAATCEKECVAK 62
          KKM  VLL C+V+++AL+FS  +   E E +++S F      +AK+K+C  +CEKEC+  
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGE-EKEDKYESKF------DAKYKTCYESCEKECLEN 63

Query: 63 GETSES-CKPKCETDCGKKEVSEKFNIH 90
          G   +S C+ KC+ DCG+KE ++K +I+
Sbjct: 64 GNNGQSFCEVKCDEDCGEKESADKLHIN 84

[Close]
BLAST of Cp4.1LG19g01170 vs. NCBI nr
Match: gi|449445523|ref|XP_004140522.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 8.4e-12
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 1 

Query: 1  MAKKMTAVLLTCVVLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKFKSCAATCEKECV 60
          MAKKM AV L C+V+V++LQF+TA+   E+ +    F       +AK+K+C  TCEKEC+
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKF-------DAKYKACFVTCEKECI 60

Query: 61 AKGETSESCKPKCETDCGKKEVSEKFNIH 90
           +G     C+ KC+ DCG KE ++K +IH
Sbjct: 61 ERGSGHSYCEVKCDEDCGAKEAADKLHIH 82

[Close]
BLAST of Cp4.1LG19g01170 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 1 

Query: 1  MAKKMTAVLLTCVVLVSALQFSTA---DSPAEMEARFKSFFGDLSGVEAKFKSCAATCEK 60
          MAKKM A+ L C+V+V+ALQF++A   D  A+ EA+F          +AK+KSC  TCEK
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKF----------DAKYKSCFKTCEK 60

Query: 61 ECVAKGETSESCKPKCETDCGKKEVSEKFNIHL 91
          EC+  G     C+ KC+ DC +KEV++K +I L
Sbjct: 61 ECLENGSGQSYCEVKCDEDCNEKEVADKLHIEL 83

[Close]
BLAST of Cp4.1LG19g01170 vs. NCBI nr
Match: gi|659119712|ref|XP_008459802.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 1  MAKKMTAVLLTCVVLVSALQFSTA---DSPAEMEARFKSFFGDLSGVEAKFKSCAATCEK 60
          MAKKM AV L C+V+V+ LQF+TA   D  A  EA+F          +AK+K+C   CEK
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYEAKF----------DAKYKACFVICEK 60

Query: 61 ECVAKGETSESCKPKCETDCGKKEVSEKFNIHL 91
          ECV +G     C+ KC+ DCG KE ++K  I L
Sbjct: 61 ECVERGGGHSYCEVKCDEDCGAKEAADKLGIIL 83

[Close]
BLAST of Cp4.1LG19g01170 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1 

Query: 1  MAKKMTAVLLTCVVLVSALQFSTADSP--AEMEARFKSFFGDLSGVEAKFKSCAATCEKE 60
          MA KM A+ L C+V+V+ALQF+ A+    A+ EA+F          +AK+KSC  TCEKE
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKF----------DAKYKSCFETCEKE 60

Query: 61 CVAKGETSESCKPKCETDCGKKEVSEKFNIHL 91
          C+  G     C+ KC+ DC +KE ++K +I L
Sbjct: 61 CLRYGSGQSYCEVKCDEDCDEKEAADKLHIEL 82

[Close]
BLAST of Cp4.1LG19g01170 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-09
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 1 

Query: 1  MAKKMTAVLLTCVVLVSALQFSTA---DSPAEMEARFKSFFGDLSGVEAKFKSCAATCEK 60
          MAKKM AV L C+V+V+ LQF  A   D   + EA+F          +AK+KSC  TCEK
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKF----------DAKYKSCYETCEK 60

Query: 61 ECVAKGETSES-CKPKCETDCGKKEVSEKFNIHL 91
          EC+      ES C+ KC+ DC +KE ++K +I L
Sbjct: 61 ECLRNDTNGESFCEVKCDEDCSEKEAADKLHIEL 84

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g01170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g01170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDP7_CUCSA5.8e-1244.94Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1[more]
A0A0A0KPA7_CUCSA9.3e-1043.48Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1[more]
A0A0A0K9Z9_CUCSA3.5e-0944.68Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1[more]
A0A0A0KFH6_CUCSA3.5e-0940.66Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1[more]
A0A0A0KCI6_CUCSA1.3e-0842.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1[more]
BLAST of Cp4.1LG19g01170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g01170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445523|ref|XP_004140522.1|8.4e-1244.94PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|659114221|ref|XP_008456958.1|1.9e-1146.24PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|659119712|ref|XP_008459802.1|1.6e-1046.24PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|449457470|ref|XP_004146471.1|1.3e-0943.48PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|700191316|gb|KGN46520.1|5.1e-0944.68hypothetical protein Csa_6G106720 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015333Pollen_allergen_ole-e-6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g01170.1Cp4.1LG19g01170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015333Pollen allergen ole e 6GENE3DG3DSA:1.10.287.720coord: 46..87
score: 2.
IPR015333Pollen allergen ole e 6PFAMPF09253Ole-e-6coord: 51..87
score: 1.
IPR015333Pollen allergen ole e 6unknownSSF111388Pollen allergen ole e 6coord: 45..86
score: 3.
NoneNo IPR availablePANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..88
score: 9.2
NoneNo IPR availablePANTHERPTHR35632:SF1SUBFAMILY NOT NAMEDcoord: 1..88
score: 9.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g01170Cucurbita maxima (Rimu)cmacpeB880
Cp4.1LG19g01170Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g01170Wild cucumber (PI 183967)cpecpiB486
Cp4.1LG19g01170Wild cucumber (PI 183967)cpecpiB493
Cp4.1LG19g01170Cucumber (Chinese Long) v2cpecuB485
Cp4.1LG19g01170Cucumber (Chinese Long) v2cpecuB498
Cp4.1LG19g01170Bottle gourd (USVL1VR-Ls)cpelsiB392
Cp4.1LG19g01170Watermelon (Charleston Gray)cpewcgB421
Cp4.1LG19g01170Watermelon (Charleston Gray)cpewcgB434
Cp4.1LG19g01170Watermelon (97103) v1cpewmB473
Cp4.1LG19g01170Watermelon (97103) v1cpewmB489
Cp4.1LG19g01170Melon (DHL92) v3.5.1cpemeB450
Cp4.1LG19g01170Melon (DHL92) v3.5.1cpemeB441
Cp4.1LG19g01170Melon (DHL92) v3.6.1cpemedB524
Cp4.1LG19g01170Melon (DHL92) v3.6.1cpemedB533
Cp4.1LG19g01170Silver-seed gourdcarcpeB0400