Cp4.1LG19g01130 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g01130
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG19 : 940387 .. 941051 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCACAATCAAATTAAGAAAAAAAAACATAAAAAAGGAAAAAAAAAGTCGAAGAATTTTCTTCAAGGCAAGAAAAAAATGGCAAAGAAGATGATGGCAGTGGTTCTAATGTGTGTTTTGATGGTATCCGTACTGCAATTCTCCACTGCTGACAAATCATCAGCTGAAATGGAGGCAAAATTCAAGTCGTTCTTTAATGACTTTGGCTCCGTGGAAGCAAATTTTAAGACGTGTTCTGCAACCTGCCATAAGAAATGCGCTGATGCTGCATGTCGTAATAAGTGTGACGCAGATTGCGGCAAAAAGGAAGTTGAAAGTACATTTTTCTATCTCTTTAGACAAAAATCATTTTAACATTCAATATCAGAAAATGTATTAACTTTTTATTCTAACCTATTAATATATCTACAAATACAATAGTTGTTGCAACCCTTAGTTTAAACGTATAATTTTCTCATCGAATTTTGGTCGATTTACTCAATAGAAGTGAAGTTTGATTTCATATCAAATTTGACTTTCTTTTTTATTTAAGTTTGTGAGATTCTTACTTTTTAATTTTGTGCATTATTATTAATTTTTGTTGTGCTTATTTTGCAGATAAATTTAAGATCAAGATACCCCATTGATAATCGAGGAGGATAAAATGAAAGTGAGCGGTGAAAAA

mRNA sequence

TCATCACAATCAAATTAAGAAAAAAAAACATAAAAAAGGAAAAAAAAAGTCGAAGAATTTTCTTCAAGGCAAGAAAAAAATGGCAAAGAAGATGATGGCAGTGGTTCTAATGTGTGTTTTGATGGTATCCGTACTGCAATTCTCCACTGCTGACAAATCATCAGCTGAAATGGAGGCAAAATTCAAGTCGTTCTTTAATGACTTTGGCTCCGTGGAAGCAAATTTTAAGACGTGTTCTGCAACCTGCCATAAGAAATGCGCTGATGCTGCATGTCGTAATAAGTGTGACGCAGATTGCGGCAAAAAGGAAGTTGAAAATAAATTTAAGATCAAGATACCCCATTGATAATCGAGGAGGATAAAATGAAAGTGAGCGGTGAAAAA

Coding sequence (CDS)

ATGGCAAAGAAGATGATGGCAGTGGTTCTAATGTGTGTTTTGATGGTATCCGTACTGCAATTCTCCACTGCTGACAAATCATCAGCTGAAATGGAGGCAAAATTCAAGTCGTTCTTTAATGACTTTGGCTCCGTGGAAGCAAATTTTAAGACGTGTTCTGCAACCTGCCATAAGAAATGCGCTGATGCTGCATGTCGTAATAAGTGTGACGCAGATTGCGGCAAAAAGGAAGTTGAAAATAAATTTAAGATCAAGATACCCCATTGA

Protein sequence

MAKKMMAVVLMCVLMVSVLQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSATCHKKCADAACRNKCDADCGKKEVENKFKIKIPH
Homology
[Close]
BLAST of Cp4.1LG19g01130 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-07
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADK--SSAEMEAKFKSFFNDFGSVEANFKTCSATCHK 60
          MAKKMMAV LMC+++V+ LQF+TA+K    A  EAKF          +A +K C  TC K
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKF----------DAKYKACFVTCEK 60

Query: 61 KCAD-----AACRNKCDADCGKKEVENKFKI 85
          +C +     + C  KCD DCG KE  +K  I
Sbjct: 61 ECIERGSGHSYCEVKCDEDCGAKEAADKLHI 81

[Close]
BLAST of Cp4.1LG19g01130 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-06
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 1 

Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADKSS--AEMEAKFKSFFNDFGSVEANFKTCSATCHK 60
          MAKKMMAV LMC+++V+ LQF  A++     + EAKF          +A +K+C  TC K
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKF----------DAKYKSCYETCEK 60

Query: 61 KC------ADAACRNKCDADCGKKEVENKFKIKI 87
          +C       ++ C  KCD DC +KE  +K  I++
Sbjct: 61 ECLRNDTNGESFCEVKCDEDCSEKEAADKLHIEL 84

[Close]
BLAST of Cp4.1LG19g01130 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.0e-06
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADKSS-AEMEAKFKSFFNDFGSVEANFKTCSATCHKK 60
          MA KM+A+ LMC+++V+ LQF+ A+K   A+ EAKF          +A +K+C  TC K+
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKF----------DAKYKSCFETCEKE 60

Query: 61 C-----ADAACRNKCDADCGKKEVENKFKIKI 87
          C       + C  KCD DC +KE  +K  I++
Sbjct: 61 CLRYGSGQSYCEVKCDEDCDEKEAADKLHIEL 82

[Close]
BLAST of Cp4.1LG19g01130 vs. NCBI nr
Match: gi|449445523|ref|XP_004140522.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-07
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 1 

Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADK--SSAEMEAKFKSFFNDFGSVEANFKTCSATCHK 60
          MAKKMMAV LMC+++V+ LQF+TA+K    A  EAKF          +A +K C  TC K
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKF----------DAKYKACFVTCEK 60

Query: 61 KCAD-----AACRNKCDADCGKKEVENKFKI 85
          +C +     + C  KCD DCG KE  +K  I
Sbjct: 61 ECIERGSGHSYCEVKCDEDCGAKEAADKLHI 81

[Close]
BLAST of Cp4.1LG19g01130 vs. NCBI nr
Match: gi|659119712|ref|XP_008459802.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 1 

Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADKSS--AEMEAKFKSFFNDFGSVEANFKTCSATCHK 60
          MAKKMMAV LMC+++V+ LQF+TA+K    A  EAKF          +A +K C   C K
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYEAKF----------DAKYKACFVICEK 60

Query: 61 KCAD-----AACRNKCDADCGKKEVENKFKI 85
          +C +     + C  KCD DCG KE  +K  I
Sbjct: 61 ECVERGGGHSYCEVKCDEDCGAKEAADKLGI 81

[Close]
BLAST of Cp4.1LG19g01130 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-07
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 1 

Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADKSS--AEMEAKFKSFFNDFGSVEANFKTCSATCHK 60
          MAKKM+A+ LMC+++V+ LQF++A+K    A+ EAKF          +A +K+C  TC K
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKF----------DAKYKSCFKTCEK 60

Query: 61 KCAD-----AACRNKCDADCGKKEVENKFKIKI 87
          +C +     + C  KCD DC +KEV +K  I++
Sbjct: 61 ECLENGSGQSYCEVKCDEDCNEKEVADKLHIEL 83

[Close]
BLAST of Cp4.1LG19g01130 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 6.6e-06
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 1 

Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADKSS--AEMEAKFKSFFNDFGSVEANFKTCSATCHK 60
          MAKKMMAV LMC+++V+ LQF  A++     + EAKF          +A +K+C  TC K
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKF----------DAKYKSCYETCEK 60

Query: 61 KC------ADAACRNKCDADCGKKEVENKFKIKI 87
          +C       ++ C  KCD DC +KE  +K  I++
Sbjct: 61 ECLRNDTNGESFCEVKCDEDCSEKEAADKLHIEL 84

[Close]
BLAST of Cp4.1LG19g01130 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 8.7e-06
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADKSS-AEMEAKFKSFFNDFGSVEANFKTCSATCHKK 60
          MA KM+A+ LMC+++V+ LQF+ A+K   A+ EAKF          +A +K+C  TC K+
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKF----------DAKYKSCFETCEKE 60

Query: 61 C-----ADAACRNKCDADCGKKEVENKFKIKI 87
          C       + C  KCD DC +KE  +K  I++
Sbjct: 61 CLRYGSGQSYCEVKCDEDCDEKEAADKLHIEL 82

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g01130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g01130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDP7_CUCSA1.4e-0745.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1[more]
A0A0A0K9Z9_CUCSA4.6e-0639.36Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1[more]
A0A0A0KPA7_CUCSA6.0e-0639.13Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1[more]
BLAST of Cp4.1LG19g01130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g01130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445523|ref|XP_004140522.1|2.1e-0745.05PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|659119712|ref|XP_008459802.1|3.5e-0743.96PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|659114221|ref|XP_008456958.1|4.6e-0740.86PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|700191316|gb|KGN46520.1|6.6e-0639.36hypothetical protein Csa_6G106720 [Cucumis sativus][more]
gi|449457470|ref|XP_004146471.1|8.7e-0639.13PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015333Pollen_allergen_ole-e-6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g01130.1Cp4.1LG19g01130.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015333Pollen allergen ole e 6GENE3DG3DSA:1.10.287.720coord: 47..83
score: 5.
IPR015333Pollen allergen ole e 6unknownSSF111388Pollen allergen ole e 6coord: 46..82
score: 5.6
NoneNo IPR availablePANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..88
score: 4.0
NoneNo IPR availablePANTHERPTHR35632:SF1SUBFAMILY NOT NAMEDcoord: 1..88
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g01130Cucurbita maxima (Rimu)cmacpeB880
Cp4.1LG19g01130Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g01130Wild cucumber (PI 183967)cpecpiB486
Cp4.1LG19g01130Wild cucumber (PI 183967)cpecpiB493
Cp4.1LG19g01130Cucumber (Chinese Long) v2cpecuB485
Cp4.1LG19g01130Cucumber (Chinese Long) v2cpecuB498
Cp4.1LG19g01130Bottle gourd (USVL1VR-Ls)cpelsiB392
Cp4.1LG19g01130Watermelon (Charleston Gray)cpewcgB421
Cp4.1LG19g01130Watermelon (Charleston Gray)cpewcgB434
Cp4.1LG19g01130Watermelon (97103) v1cpewmB473
Cp4.1LG19g01130Watermelon (97103) v1cpewmB489
Cp4.1LG19g01130Melon (DHL92) v3.5.1cpemeB450
Cp4.1LG19g01130Melon (DHL92) v3.5.1cpemeB441
Cp4.1LG19g01130Melon (DHL92) v3.6.1cpemedB524
Cp4.1LG19g01130Melon (DHL92) v3.6.1cpemedB533
Cp4.1LG19g01130Silver-seed gourdcarcpeB0400