Cp4.1LG19g01110 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG19g01110
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG19 : 951736 .. 952433 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATCCACAATCAAATTAAGAAAAAAAAAAGAGTCGAAGAATTTTGCTCCAGGCAAGAAAAAAATGGCAAAGAAGATGATGGCAGTGGTTCTAATGTGTGTTTTGATGGTATCGGTACTGCAATTCTCTACTGCTGATAAATCATCAGCTGAAATGGAGGCAAAATTTAAGTCGTTCTTTAACGATTTTGGCTCCGTGGAAGCAAATTTTAAGACGTGTTCTGCAGCCTGCCATAAGAAATGTGCTGATGCTGCATGTCGTAATAAGTGTGATGCCGATTGCGGCAAAAAGGAAGTTGAAAGTACATTTTTCTATCTCTTTAGACAAAAATCATGTTAACATTCAATATAAGAAAATGTATTAACTTTTTATTCTAACCTATTAATATATCTACAAATACAATAGTTGTTATTATTAATTTTTGTTGGGTTTATTTTGCAGATAAATTTAAAATCAAGATACCTCACTGATAACCGGGGAGATGAAAAGAAAAGAGCTTTAGAAGAATTATTAATTTGATGTTGAACATCAAATACAATTTATTTGAATAATATTTTATTTATTTTTGTAATCTATTTATTTATTTATTATAAAATGTTTCTTTCATATTGTTGAGTTTATTTCATTATTTTTATCAACCAAAAAAACCAAAAAAATTCAAATTATTTATAGTTTTCATTTACAATTTTTTTTTTTTA

mRNA sequence

TCATCCACAATCAAATTAAGAAAAAAAAAAGAGTCGAAGAATTTTGCTCCAGGCAAGAAAAAAATGGCAAAGAAGATGATGGCAGTGGTTCTAATGTGTGTTTTGATGGTATCGGTACTGCAATTCTCTACTGCTGATAAATCATCAGCTGAAATGGAGGCAAAATTTAAGTCGTTCTTTAACGATTTTGGCTCCGTGGAAGCAAATTTTAAGACGTGTTCTGCAGCCTGCCATAAGAAATGTGCTGATGCTGCATGTCGTAATAAGTGTGATGCCGATTGCGGCAAAAAGGAAGTTGAAAATAAATTTAAAATCAAGATACCTCACTGATAACCGGGGAGATGAAAAGAAAAGAGCTTTAGAAGAATTATTAATTTGATGTTGAACATCAAATACAATTTATTTGAATAATATTTTATTTATTTTTGTAATCTATTTATTTATTTATTATAAAATGTTTCTTTCATATTGTTGAGTTTATTTCATTATTTTTATCAACCAAAAAAACCAAAAAAATTCAAATTATTTATAGTTTTCATTTACAATTTTTTTTTTTTA

Coding sequence (CDS)

ATGGCAAAGAAGATGATGGCAGTGGTTCTAATGTGTGTTTTGATGGTATCGGTACTGCAATTCTCTACTGCTGATAAATCATCAGCTGAAATGGAGGCAAAATTTAAGTCGTTCTTTAACGATTTTGGCTCCGTGGAAGCAAATTTTAAGACGTGTTCTGCAGCCTGCCATAAGAAATGTGCTGATGCTGCATGTCGTAATAAGTGTGATGCCGATTGCGGCAAAAAGGAAGTTGAAAATAAATTTAAAATCAAGATACCTCACTGA

Protein sequence

MAKKMMAVVLMCVLMVSVLQFSTADKSSAEMEAKFKSFFNDFGSVEANFKTCSAACHKKCADAACRNKCDADCGKKEVENKFKIKIPH

Homology

[Close]

BLAST of Cp4.1LG19g01110 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-07
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 1


Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADK--SSAEMEAKFKSFFNDFGSVEANFKTCSAACHK 60
          MAKKMMAV LMC+++V+ LQF+TA+K    A  EAKF          +A +K C   C K
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKF----------DAKYKACFVTCEK 60

Query: 61 KCAD-----AACRNKCDADCGKKEVENKFKI 85
          +C +     + C  KCD DCG KE  +K  I
Sbjct: 61 ECIERGSGHSYCEVKCDEDCGAKEAADKLHI 81

[Close]

BLAST of Cp4.1LG19g01110 vs. NCBI nr
Match: gi|659119712|ref|XP_008459802.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-07
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 1


Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADKSS--AEMEAKFKSFFNDFGSVEANFKTCSAACHK 60
          MAKKMMAV LMC+++V+ LQF+TA+K    A  EAKF          +A +K C   C K
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYEAKF----------DAKYKACFVICEK 60

Query: 61 KCAD-----AACRNKCDADCGKKEVENKFKI 85
          +C +     + C  KCD DCG KE  +K  I
Sbjct: 61 ECVERGGGHSYCEVKCDEDCGAKEAADKLGI 81

[Close]

BLAST of Cp4.1LG19g01110 vs. NCBI nr
Match: gi|449445523|ref|XP_004140522.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 1


Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADK--SSAEMEAKFKSFFNDFGSVEANFKTCSAACHK 60
          MAKKMMAV LMC+++V+ LQF+TA+K    A  EAKF          +A +K C   C K
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKF----------DAKYKACFVTCEK 60

Query: 61 KCAD-----AACRNKCDADCGKKEVENKFKI 85
          +C +     + C  KCD DCG KE  +K  I
Sbjct: 61 ECIERGSGHSYCEVKCDEDCGAKEAADKLHI 81

[Close]

BLAST of Cp4.1LG19g01110 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 1


Query: 1  MAKKMMAVVLMCVLMVSVLQFSTADKSS--AEMEAKFKSFFNDFGSVEANFKTCSAACHK 60
          MAKKM+A+ LMC+++V+ LQF++A+K    A+ EAKF          +A +K+C   C K
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKF----------DAKYKSCFKTCEK 60

Query: 61 KCAD-----AACRNKCDADCGKKEVENKFKIKI 87
          +C +     + C  KCD DC +KEV +K  I++
Sbjct: 61 ECLENGSGQSYCEVKCDEDCNEKEVADKLHIEL 83

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g01110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG19g01110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDP7_CUCSA	7.1e-07	43.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1	[more]

BLAST of Cp4.1LG19g01110 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG19g01110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119712\|ref\|XP_008459802.1\|	4.6e-07	43.96	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]
gi\|449445523\|ref\|XP_004140522.1\|	1.0e-06	43.96	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus]	[more]
gi\|659114221\|ref\|XP_008456958.1\|	1.7e-06	39.78	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015333	Pollen_allergen_ole-e-6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g01110.1	Cp4.1LG19g01110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	GENE3D	G3DSA:1.10.287.720		coord: 47..83 score: 1.
IPR015333	Pollen allergen ole e 6	unknown	SSF111388	Pollen allergen ole e 6	coord: 46..82 score: 1.8
None	No IPR available	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 1..88 score: 2.2
None	No IPR available	PANTHER	PTHR35632:SF1	SUBFAMILY NOT NAMED	coord: 1..88 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG19g01110	Cucurbita maxima (Rimu)	cmacpeB880
Cp4.1LG19g01110	Cucurbita moschata (Rifu)	cmocpeB817
Cp4.1LG19g01110	Wild cucumber (PI 183967)	cpecpiB486
Cp4.1LG19g01110	Wild cucumber (PI 183967)	cpecpiB493
Cp4.1LG19g01110	Cucumber (Chinese Long) v2	cpecuB485
Cp4.1LG19g01110	Cucumber (Chinese Long) v2	cpecuB498
Cp4.1LG19g01110	Bottle gourd (USVL1VR-Ls)	cpelsiB392
Cp4.1LG19g01110	Watermelon (Charleston Gray)	cpewcgB421
Cp4.1LG19g01110	Watermelon (Charleston Gray)	cpewcgB434
Cp4.1LG19g01110	Watermelon (97103) v1	cpewmB473
Cp4.1LG19g01110	Watermelon (97103) v1	cpewmB489
Cp4.1LG19g01110	Melon (DHL92) v3.5.1	cpemeB450
Cp4.1LG19g01110	Melon (DHL92) v3.5.1	cpemeB441
Cp4.1LG19g01110	Melon (DHL92) v3.6.1	cpemedB524
Cp4.1LG19g01110	Melon (DHL92) v3.6.1	cpemedB533
Cp4.1LG19g01110	Silver-seed gourd	carcpeB0400