Cp4.1LG18g00760 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g00760
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG18 : 1823286 .. 1825065 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GACGGGAAATATAGATCCAGGGAAGCTGATAAAGAAGCTTGAGAAATCTGGGAAACATGCTGAGTTATGGGGAGCTCAGATTAGTTCAAATAACATGAACAATTTCAATAATCTGTTTCAGAATGTTAAAGGAGGAAGCAAAGACAACAATATGGATAATCATAAGTTGCTGATGGAGAAGGCTTTTCTTCAACAACAGCAACAAATGAAGGGCTCTAACAATGGTATGAACAAAGGAGGAGGTAATAATAATAATATGCATAGTGTTGTGGTTCCTGGTAAAGATAAGAAATCTGTTAAGTTCAATTTGCCTGAGGAAGATTCTGAGTTTAGTGATGAGTTTGATGATGAATTTGATGATGAATTTGATGATGAATTTGATGATGAACATGATGAGTTTAGTCATGAACATGGACATGAGTTACCTAATAATATGATGCCTATGATGGGTAGCAAAGGAGGAGGGTCTTTTGGGTCTAATGGGATGATTGATATCAATTCCATGAATGGTGGTAAGAAAGGTGGGGTTGGTGGAGGTGCTGTCAAGAAGGGTGAAGCTATTGACTTCCCTGTCATGATGAAGGGCAAGGGGGGAGGGAAGAAGGACGGTGGCCATGGCGATGGGGGCGGTGGCGGTGGCGGCGGGGGGACGAAGAGTAAGAGCAAAGGAGGGGGGTTTCTAGGACTAGGCAAGAAGGGGCTGTTTGGATTTGGAGGTAAGAATGATAGCAAGAAGAACAAAGGAAGCAGCAAAGCAGCTGATGGAGGTAAACATAATGGCAATGGAGGCAAGAAAGGAGGCAAAGCTGATGGCCTCCATGAGTTTGACAAGCTAGATATTAACTTCCATGACATTGATATCACCAAACCCAGCAAAGGAGGCAAAGGGGGTAGCGGTGGGAATGGTAAGGACATGGCTCAAACCCATATGGGTCATGCCACCAATGGAAACAAAAGCCAGATGGGTCAGCCAATGGGTGCTGCTGGTGCCAATAGGGCTCCACCAATGGGAAACTATGCAATGAATCAGATGGGTAACATTCCAGCCGTTCGAGGTCTACCCGCTCATCCCGCTCATCCCGCTCATCCCGCTCAACCAATGATGAGCGGAGGGGGAGGCGGGTATTACCAAGGAATGGGCCAAGGGAATCCATACGCCCAACAACAACAACAACAATACATGGCTATGATGATGAACCAACCAAGGGGAGTGGGGAACGATATGTTCCAACCCATGATGTATTCACGACCGAACCCGGCCATGAACTACGGTCCACCGCCCCCGATGCTTCCTCCGGTTGCAACCGATCAGTACACGCACTTCTTCAGCGACGAGAATACAGATAGTTGCAGTGTTATGTAAATTTTGGCCCTAAAACATCCTTTTGCTTGGGTTATTTTATAGGATTAGTGTTTAGTTGAATGTAGAAATGGGTGTTGTTTTACTTTGATTCAATCAAAAACCCACTTAGTATTTTACTGTTTTGAGTTTCAAGTTGCAGAGATAATAAAAACCAGACCCCTTAGGGCTCCACAGTACCTTATCATGTCAGGGTTTTGTCGGTTCAGCTGTGGCTGCCTCAACTCATGATTTTTTTTGCTTTATTTTACTTAAGTTTACGATAAGTTCGAATTTTCGTGTGAACATGATTCGTTATCAATCCCCGGTTTTGCATACCGACCTTTAGCCACCAATCCTCGGTGTCTTTATCATGTGCGAACTTCTATCGGAGGGAGGTTCGGTATCCCTTCTTATCATATGGGCAAACTTCGATCTCAT

mRNA sequence

GACGGGAAATATAGATCCAGGGAAGCTGATAAAGAAGCTTGAGAAATCTGGGAAACATGCTGAGTTATGGGGAGCTCAGATTAGTTCAAATAACATGAACAATTTCAATAATCTGTTTCAGAATGTTAAAGGAGGAAGCAAAGACAACAATATGGATAATCATAAGTTGCTGATGGAGAAGGCTTTTCTTCAACAACAGCAACAAATGAAGGGCTCTAACAATGGTAAGAATGATAGCAAGAAGAACAAAGGAAGCAGCAAAGCAGCTGATGGAGGTAAACATAATGGCAATGGAGGCAAGAAAGGAGGCAAAGCTGATGGCCTCCATGAGTTTGACAAGCTAGATATTAACTTCCATGACATTGATATCACCAAACCCAGCAAAGGAGGCAAAGGGGGTAGCGGTGGGAATGGTAAGGACATGGCTCAAACCCATATGGGTCATGCCACCAATGGAAACAAAAGCCAGATGGGTCAGCCAATGGGTGCTGCTGGTGCCAATAGGGCTCCACCAATGGGAAACTATGCAATGAATCAGATGGGTAACATTCCAGCCGTTCGAGTTTACGATAAGTTCGAATTTTCGTGTGAACATGATTCGTTATCAATCCCCGGTTTTGCATACCGACCTTTAGCCACCAATCCTCGGTGTCTTTATCATGTGCGAACTTCTATCGGAGGGAGGTTCGGTATCCCTTCTTATCATATGGGCAAACTTCGATCTCAT

Coding sequence (CDS)

ATGAACAATTTCAATAATCTGTTTCAGAATGTTAAAGGAGGAAGCAAAGACAACAATATGGATAATCATAAGTTGCTGATGGAGAAGGCTTTTCTTCAACAACAGCAACAAATGAAGGGCTCTAACAATGGTAAGAATGATAGCAAGAAGAACAAAGGAAGCAGCAAAGCAGCTGATGGAGGTAAACATAATGGCAATGGAGGCAAGAAAGGAGGCAAAGCTGATGGCCTCCATGAGTTTGACAAGCTAGATATTAACTTCCATGACATTGATATCACCAAACCCAGCAAAGGAGGCAAAGGGGGTAGCGGTGGGAATGGTAAGGACATGGCTCAAACCCATATGGGTCATGCCACCAATGGAAACAAAAGCCAGATGGGTCAGCCAATGGGTGCTGCTGGTGCCAATAGGGCTCCACCAATGGGAAACTATGCAATGAATCAGATGGGTAACATTCCAGCCGTTCGAGTTTACGATAAGTTCGAATTTTCGTGTGAACATGATTCGTTATCAATCCCCGGTTTTGCATACCGACCTTTAGCCACCAATCCTCGGTGTCTTTATCATGTGCGAACTTCTATCGGAGGGAGGTTCGGTATCCCTTCTTATCATATGGGCAAACTTCGATCTCAT

Protein sequence

MNNFNNLFQNVKGGSKDNNMDNHKLLMEKAFLQQQQQMKGSNNGKNDSKKNKGSSKAADGGKHNGNGGKKGGKADGLHEFDKLDINFHDIDITKPSKGGKGGSGGNGKDMAQTHMGHATNGNKSQMGQPMGAAGANRAPPMGNYAMNQMGNIPAVRVYDKFEFSCEHDSLSIPGFAYRPLATNPRCLYHVRTSIGGRFGIPSYHMGKLRSH
Homology
[Close]
BLAST of Cp4.1LG18g00760 vs. TrEMBL
Match: A0A0A0LWG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G570180 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.2e-25
Identity = 79/141 (56.03%), Postives = 93/141 (65.96%), Query Frame = 1 

Query: 40  GSNNGKNDS--KKNKGSS---KAAD--GGKHNGNGGKKGGKADGLHEFDKLDINFHDIDI 99
           G N  K D+  KKNKGSS   K+++  GGKHNGNG KKGGK+DGLHEFDK+D+ FHD+DI
Sbjct: 493 GKNGSKKDNGGKKNKGSSNNNKSSENGGGKHNGNGAKKGGKSDGLHEFDKMDLGFHDLDI 552

Query: 100 TKPSKGGKGGSGGNG--KDMAQTHMGHATNGNK------SQMGQ---------PMGAAGA 157
            KPSKGGKG   GNG       ++    +NGN       +QMGQ         PMG AG 
Sbjct: 553 AKPSKGGKGNGNGNGGSNGNGNSNGNGNSNGNSKNISQMNQMGQMGHGNGNRGPMGHAGV 612

[Close]
BLAST of Cp4.1LG18g00760 vs. TrEMBL
Match: A0A061F3B5_THECC (Chloroplast-targeted copper chaperone-like protein OS=Theobroma cacao GN=TCM_026590 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = 1 

Query: 44  GKND-SKKNKGSSKAADG---GKHNGNGGKKGG--KADGLHEFDKL-DINFHDIDITKPS 103
           GKN+   KNKG+     G   G +NGNG KKGG     G HE +K+ +  FHDID+    
Sbjct: 292 GKNEWDGKNKGAHNGNGGHGGGNNNGNGAKKGGGKNGGGGHEMNKIKNGGFHDIDVINHG 351

Query: 104 K---GGKGGSGGNGKDMAQT-----HMGHATNGNKSQMGQPMGAAGANRAPPMGNYAMNQ 157
           K   GG GG GG GK+M Q       MG     N  QMG  M   G      +GNY M+Q
Sbjct: 352 KGGGGGGGGGGGGGKNMGQMGQMGGQMGQMGYNNMGQMGYNMSQMG--HMGQIGNYPMSQ 411

[Close]
BLAST of Cp4.1LG18g00760 vs. NCBI nr
Match: gi|659099569|ref|XP_008450667.1| (PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 4.3e-27
Identity = 83/138 (60.14%), Postives = 97/138 (70.29%), Query Frame = 1 

Query: 40  GSNNGKNDS--KKNKGSS---KAAD--GGKHNGNGGKKGGKADGLHEFDKLDINFHDIDI 99
           G N  K D+  KKNKGSS   K+++  GGKHN NG KKGGK DGLHEFDK+D+ FHD+DI
Sbjct: 345 GKNGSKKDNGGKKNKGSSNNNKSSENGGGKHNSNGAKKGGKNDGLHEFDKMDLGFHDLDI 404

Query: 100 TKPSKGGKGGSGGNG----------KDMAQTH----MGHATNGNKSQMGQPMGAAGANRA 157
            KPSKGGK   GGNG          K+M+Q +    +GH  NGN+ QMG PMG AG +R 
Sbjct: 405 AKPSKGGKVNGGGNGNGNGNGNGNSKNMSQMNQMGQLGHG-NGNRGQMG-PMGHAGVSRG 464

[Close]
BLAST of Cp4.1LG18g00760 vs. NCBI nr
Match: gi|700210997|gb|KGN66093.1| (hypothetical protein Csa_1G570180 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 9.0e-25
Identity = 79/141 (56.03%), Postives = 93/141 (65.96%), Query Frame = 1 

Query: 40  GSNNGKNDS--KKNKGSS---KAAD--GGKHNGNGGKKGGKADGLHEFDKLDINFHDIDI 99
           G N  K D+  KKNKGSS   K+++  GGKHNGNG KKGGK+DGLHEFDK+D+ FHD+DI
Sbjct: 493 GKNGSKKDNGGKKNKGSSNNNKSSENGGGKHNGNGAKKGGKSDGLHEFDKMDLGFHDLDI 552

Query: 100 TKPSKGGKGGSGGNG--KDMAQTHMGHATNGNK------SQMGQ---------PMGAAGA 157
            KPSKGGKG   GNG       ++    +NGN       +QMGQ         PMG AG 
Sbjct: 553 AKPSKGGKGNGNGNGGSNGNGNSNGNGNSNGNSKNISQMNQMGQMGHGNGNRGPMGHAGV 612

[Close]
BLAST of Cp4.1LG18g00760 vs. NCBI nr
Match: gi|778665298|ref|XP_011648533.1| (PREDICTED: probable serine/threonine-protein kinase clkA [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 9.0e-25
Identity = 79/141 (56.03%), Postives = 93/141 (65.96%), Query Frame = 1 

Query: 40  GSNNGKNDS--KKNKGSS---KAAD--GGKHNGNGGKKGGKADGLHEFDKLDINFHDIDI 99
           G N  K D+  KKNKGSS   K+++  GGKHNGNG KKGGK+DGLHEFDK+D+ FHD+DI
Sbjct: 356 GKNGSKKDNGGKKNKGSSNNNKSSENGGGKHNGNGAKKGGKSDGLHEFDKMDLGFHDLDI 415

Query: 100 TKPSKGGKGGSGGNG--KDMAQTHMGHATNGNK------SQMGQ---------PMGAAGA 157
            KPSKGGKG   GNG       ++    +NGN       +QMGQ         PMG AG 
Sbjct: 416 AKPSKGGKGNGNGNGGSNGNGNSNGNGNSNGNSKNISQMNQMGQMGHGNGNRGPMGHAGV 475

[Close]
BLAST of Cp4.1LG18g00760 vs. NCBI nr
Match: gi|1012236884|ref|XP_015939887.1| (PREDICTED: RNA-binding protein cabeza [Arachis duranensis])

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 55/120 (45.83%), Postives = 63/120 (52.50%), Query Frame = 1 

Query: 44  GKNDSKKNKGSS-KAADGGKHNGNGGKKG--GKADGLHEFDKLDINFHDIDITKPSKG-- 103
           G    K  KG++ K     K NGNGG KG  GK +G  + DK+D +F D DI  PS G  
Sbjct: 352 GLGGKKSKKGATDKTNKNNKSNGNGGNKGKDGKKNGGGKLDKVDFDFDDFDILPPSSGKS 411

Query: 104 GKGGSGG--NGKDMAQTHMGHATNGNKSQMGQPMGAAGANRAPPMGNYAMNQMGNIPAVR 157
           GKGGSGG   G +    H G   NGN  QMGQ           PMG   M QMGNIPAV+
Sbjct: 412 GKGGSGGGKGGNNNGHHHGGSGNNGNMGQMGQ---------KGPMGQ--MGQMGNIPAVQ 460

[Close]
BLAST of Cp4.1LG18g00760 vs. NCBI nr
Match: gi|590643799|ref|XP_007030901.1| (Chloroplast-targeted copper chaperone-like protein [Theobroma cacao])

HSP 1 Score: 63.5 bits (153), Expect = 4.9e-07
Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = 1 

Query: 44  GKND-SKKNKGSSKAADG---GKHNGNGGKKGG--KADGLHEFDKL-DINFHDIDITKPS 103
           GKN+   KNKG+     G   G +NGNG KKGG     G HE +K+ +  FHDID+    
Sbjct: 292 GKNEWDGKNKGAHNGNGGHGGGNNNGNGAKKGGGKNGGGGHEMNKIKNGGFHDIDVINHG 351

Query: 104 K---GGKGGSGGNGKDMAQT-----HMGHATNGNKSQMGQPMGAAGANRAPPMGNYAMNQ 157
           K   GG GG GG GK+M Q       MG     N  QMG  M   G      +GNY M+Q
Sbjct: 352 KGGGGGGGGGGGGGKNMGQMGQMGGQMGQMGYNNMGQMGYNMSQMG--HMGQIGNYPMSQ 411

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g00760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g00760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWG7_CUCSA6.2e-2556.03Uncharacterized protein OS=Cucumis sativus GN=Csa_1G570180 PE=4 SV=1[more]
A0A061F3B5_THECC3.4e-0743.75Chloroplast-targeted copper chaperone-like protein OS=Theobroma cacao GN=TCM_026... [more]
BLAST of Cp4.1LG18g00760 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g00760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099569|ref|XP_008450667.1|4.3e-2760.14PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis melo][more]
gi|700210997|gb|KGN66093.1|9.0e-2556.03hypothetical protein Csa_1G570180 [Cucumis sativus][more]
gi|778665298|ref|XP_011648533.1|9.0e-2556.03PREDICTED: probable serine/threonine-protein kinase clkA [Cucumis sativus][more]
gi|1012236884|ref|XP_015939887.1|1.7e-0745.83PREDICTED: RNA-binding protein cabeza [Arachis duranensis][more]
gi|590643799|ref|XP_007030901.1|4.9e-0743.75Chloroplast-targeted copper chaperone-like protein [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0030001 metal ion transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g00760.1Cp4.1LG18g00760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG18g00760CmaCh10G010720Cucurbita maxima (Rimu)cmacpeB080
Cp4.1LG18g00760CmoCh10G011530Cucurbita moschata (Rifu)cmocpeB056
Cp4.1LG18g00760CsaV3_1G039090Cucumber (Chinese Long) v3cpecucB0432
Cp4.1LG18g00760Bhi02G001681Wax gourdcpewgoB0472
Cp4.1LG18g00760CsGy1G025980Cucumber (Gy14) v2cgybcpeB043
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g00760Cucumber (Chinese Long) v3cpecucB0438
Cp4.1LG18g00760Cucurbita pepo (Zucchini)cpecpeB366
Cp4.1LG18g00760Watermelon (97103) v1cpewmB359
Cp4.1LG18g00760Melon (DHL92) v3.5.1cpemeB333
Cp4.1LG18g00760Melon (DHL92) v3.6.1cpemedB389
Cp4.1LG18g00760Melon (DHL92) v3.6.1cpemedB391