Cp4.1LG18g00470 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g00470
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Nucleic acid-binding, OB-fold-like protein
Location	Cp4.1LG18 : 1005878 .. 1006297 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATATCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTAAACACACAATTCATAGTATTAGACAAGGGCATGACAACAATAGAAGGACAAAACAAGACATGCCAATCACTGGTGGCAGACGAAACAGCAGCGGTTCACTTCCAGCTATGGGGAGAAGAGTGTGACGTCGTCGAGCCAAGCGACATCCTACGCTTGACGAATGGGATATTTTCCTACAGCCGAAACAATAATCTGGTACTGAGGGCAGGGAAGAGAGGGAAGGTAGAGAAGGTGGGAGAGTTTAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACGACTAACTCGAAAAAGTACGTGAAGGAATCTGTTCTATCACCATATTCTCGCATCTTTCCGCCAATCCGTTGA

mRNA sequence

ATGATGATATCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTAAACACACAATTCATAGTATTAGACAAGGGCATGACAACAATAGAAGGACAAAACAAGACATGCCAATCACTGGTGGCAGACGAAACAGCAGCGGTTCACTTCCAGCTATGGGGAGAAGAGTGTGACGTCGTCGAGCCAAGCGACATCCTACGCTTGACGAATGGGATATTTTCCTACAGCCGAAACAATAATCTGGTACTGAGGGCAGGGAAGAGAGGGAAGGTAGAGAAGGTGGGAGAGTTTAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACGACTAACTCGAAAAAGTACGTGAAGGAATCTGTTCTATCACCATATTCTCGCATCTTTCCGCCAATCCGTTGA

Coding sequence (CDS)

ATGATGATATCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTAAACACACAATTCATAGTATTAGACAAGGGCATGACAACAATAGAAGGACAAAACAAGACATGCCAATCACTGGTGGCAGACGAAACAGCAGCGGTTCACTTCCAGCTATGGGGAGAAGAGTGTGACGTCGTCGAGCCAAGCGACATCCTACGCTTGACGAATGGGATATTTTCCTACAGCCGAAACAATAATCTGGTACTGAGGGCAGGGAAGAGAGGGAAGGTAGAGAAGGTGGGAGAGTTTAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACGACTAACTCGAAAAAGTACGTGAAGGAATCTGTTCTATCACCATATTCTCGCATCTTTCCGCCAATCCGTTGA

Protein sequence

MMISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR

Homology

[Close]

BLAST of Cp4.1LG18g00470 vs. Swiss-Prot
Match: SOSSB_DICDI (SOSS complex subunit B homolog OS=Dictyostelium discoideum GN=DDB_G0279223 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-15
Identity = 52/137 (37.96%), Postives = 74/137 (54.01%), Query Frame = 1


Query: 2   MISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61
           +I + ++ P ++ N+N  FIVLDKG  T + +    Q LVAD TA+++  +W    + ++
Sbjct: 3   LIKVNEIKPYSK-NINCVFIVLDKGPPTKKKEGTIYQVLVADSTASINMTVWDALGEQIQ 62

Query: 62  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHW--VPDTTNS 121
           P DILRL  G +S      L L  GK G +EK+GEF   FVE PN+S   W    D  N 
Sbjct: 63  PGDILRLKGG-YSNIYIELLNLYVGKTGIIEKIGEFTFPFVEAPNLSSTLWNVHQDPNNP 122

Query: 122 KKYVKESVLSPYSRIFP 137
           K  V     SP+ +  P
Sbjct: 123 KNMVATPKPSPHKQQQP 137

[Close]

BLAST of Cp4.1LG18g00470 vs. Swiss-Prot
Match: SOSSB_DROME (SOSS complex subunit B homolog OS=Drosophila melanogaster GN=CG5181 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-14
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 1


Query: 3   ISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSL-VADETAAVHFQLWGEECDVVE 62
           I +KD+ P  +N +N  FIVL+ G+ T+  +N+  ++  V D TA ++  +W E   ++ 
Sbjct: 7   IPIKDIKPGLKN-INVIFIVLEVGVATVTKENREVRNFKVGDPTACINVSIWDEPGKLIA 66

Query: 63  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSE 110
           P DI+RLT G  S  R+  L L +GK G+V K+GE+ MVF E+ NMSE
Sbjct: 67  PGDIVRLTKGYASIWRHC-LTLYSGKNGEVFKIGEYCMVFNESVNMSE 112

[Close]

BLAST of Cp4.1LG18g00470 vs. Swiss-Prot
Match: SOSB1_BOVIN (SOSS complex subunit B1 OS=Bos taurus GN=NABP2 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.8e-12
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1


Query: 5   LKDLVPAAQNNVNTQFIVLDKGMTTIEGQN---KTCQSLVADETAAVHFQLWGEECDVVE 64
           +KD+ P  +N +N  FIVL+ G  T        +TC+  VAD+T +++  +W +  ++++
Sbjct: 7   VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCK--VADKTGSINISVWDDVGNLIQ 66

Query: 65  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSE 110
           P DI+RLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  PGDIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of Cp4.1LG18g00470 vs. Swiss-Prot
Match: SOSB1_HUMAN (SOSS complex subunit B1 OS=Homo sapiens GN=NABP2 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.8e-12
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1


Query: 5   LKDLVPAAQNNVNTQFIVLDKGMTTIEGQN---KTCQSLVADETAAVHFQLWGEECDVVE 64
           +KD+ P  +N +N  FIVL+ G  T        +TC+  VAD+T +++  +W +  ++++
Sbjct: 7   VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCK--VADKTGSINISVWDDVGNLIQ 66

Query: 65  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSE 110
           P DI+RLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  PGDIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of Cp4.1LG18g00470 vs. Swiss-Prot
Match: SOSB1_MOUSE (SOSS complex subunit B1 OS=Mus musculus GN=Nabp2 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.8e-12
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1


Query: 5   LKDLVPAAQNNVNTQFIVLDKGMTTIEGQN---KTCQSLVADETAAVHFQLWGEECDVVE 64
           +KD+ P  +N +N  FIVL+ G  T        +TC+  VAD+T +++  +W +  ++++
Sbjct: 7   VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCK--VADKTGSINISVWDDVGNLIQ 66

Query: 65  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSE 110
           P DI+RLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  PGDIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of Cp4.1LG18g00470 vs. TrEMBL
Match: A0A0A0LW03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569370 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.9e-68
Identity = 128/139 (92.09%), Postives = 133/139 (95.68%), Query Frame = 1


Query: 1   MMISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVV 60
           MMI LKDLVPAAQN VNTQFIVL+KGMTT+EGQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 60

Query: 61  EPSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120
           EPSDI+RLTNGIFSYSRNNNLVLRAGKRGK+EKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of Cp4.1LG18g00470 vs. TrEMBL
Match: A0A162A4D5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018372 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.2e-54
Identity = 101/137 (73.72%), Postives = 118/137 (86.13%), Query Frame = 1


Query: 2   MISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61
           M+SLKD+ PAAQNN+NT+FI+LDKG   +E Q KTC +LVADETA+VHFQ WGEEC+  E
Sbjct: 1   MVSLKDIAPAAQNNINTRFILLDKGRIMLESQQKTCIALVADETASVHFQFWGEECEAFE 60

Query: 62  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSKK 121
           P DI+RLTNGIFSY+R+N+ VLRAGKRGK EKVGEF MVFVETPNMSEI WVPD  NSK 
Sbjct: 61  PGDIIRLTNGIFSYNRSNSFVLRAGKRGKAEKVGEFTMVFVETPNMSEIRWVPDPNNSKN 120

Query: 122 YVKESVLSPYSRIFPPI 139
           YVKE+VLS +SR+FPP+
Sbjct: 121 YVKEAVLSSHSRLFPPM 137

[Close]

BLAST of Cp4.1LG18g00470 vs. TrEMBL
Match: A5BEN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016667 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.0e-53
Identity = 99/137 (72.26%), Postives = 120/137 (87.59%), Query Frame = 1


Query: 2   MISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61
           M+SLKD+VPAAQNN+NTQFI+LDKG  T+EG+ KTC +LVADETAAVHFQ+WG+ECD  E
Sbjct: 87  MLSLKDMVPAAQNNINTQFIILDKGKMTLEGKYKTCLTLVADETAAVHFQMWGDECDAFE 146

Query: 62  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSKK 121
             DI+RL +GIFSY+R NNLVLRAGK+GK EKVGEF M FVETPNMSEI W+PD +N KK
Sbjct: 147 GGDIIRLVDGIFSYNR-NNLVLRAGKKGKAEKVGEFCMAFVETPNMSEIRWIPDPSNPKK 206

Query: 122 YVKESVLSPYSRIFPPI 139
           YV+++V+SP+S IFPP+
Sbjct: 207 YVQDAVISPHSHIFPPV 222

[Close]

BLAST of Cp4.1LG18g00470 vs. TrEMBL
Match: F6HQ33_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g01040 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.0e-53
Identity = 99/137 (72.26%), Postives = 120/137 (87.59%), Query Frame = 1


Query: 2   MISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61
           M+SLKD+VPAAQNN+NTQFI+LDKG  T+EG+ KTC +LVADETAAVHFQ+WG+ECD  E
Sbjct: 52  MLSLKDMVPAAQNNINTQFIILDKGKMTLEGKYKTCLTLVADETAAVHFQMWGDECDAFE 111

Query: 62  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSKK 121
             DI+RL +GIFSY+R NNLVLRAGK+GK EKVGEF M FVETPNMSEI W+PD +N KK
Sbjct: 112 GGDIIRLVDGIFSYNR-NNLVLRAGKKGKAEKVGEFCMAFVETPNMSEIRWIPDPSNPKK 171

Query: 122 YVKESVLSPYSRIFPPI 139
           YV+++V+SP+S IFPP+
Sbjct: 172 YVQDAVISPHSHIFPPV 187

[Close]

BLAST of Cp4.1LG18g00470 vs. TrEMBL
Match: W9SJC1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020432 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.0e-53
Identity = 103/140 (73.57%), Postives = 120/140 (85.71%), Query Frame = 1


Query: 2   MISLKDLVPAAQNNVNTQFIVLDKGM----TTIEGQNKTCQSLVADETAAVHFQLWGEEC 61
           MIS+KD+VPAAQNN++TQFI+L+KG     TT EG NK C +LVADETAAVHFQ WG+EC
Sbjct: 1   MISVKDIVPAAQNNISTQFILLEKGKQTTTTTTEGHNKACLALVADETAAVHFQFWGDEC 60

Query: 62  DVVEPSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTT 121
           D  EP DI+RL+NGIFSYSR NNLVLRAGKRGKVEKVGEF M FVETPNMSEI W+PD  
Sbjct: 61  DAFEPGDIIRLSNGIFSYSR-NNLVLRAGKRGKVEKVGEFTMTFVETPNMSEIRWIPDPN 120

Query: 122 NSKKYVKESVLSPYSRIFPP 138
           NSKKY++E+++S +SRIFPP
Sbjct: 121 NSKKYMQEAIVSAHSRIFPP 139

[Close]

BLAST of Cp4.1LG18g00470 vs. TAIR10
Match: AT5G63690.1 (AT5G63690.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-48
Identity = 85/138 (61.59%), Postives = 109/138 (78.99%), Query Frame = 1


Query: 1   MMISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVV 60
           M + LKD+VPAAQNN++T+FI+LDK  ++       C +L ADETAAVH QLWG+ECD  
Sbjct: 1   MQLFLKDIVPAAQNNIDTRFIILDKAKSSAANGKNYCIALAADETAAVHIQLWGDECDAF 60

Query: 61  EPSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120
           E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + FVETPN+SEI W+PD  N K
Sbjct: 61  EAGDIVKLTNGIFSYVRNSGLILRAGKRGKMEKMGEFTVAFVETPNISEIQWIPDPENPK 120

Query: 121 KYVKESVLSPYSRIFPPI 139
           +Y++  V+S YSRIFPP+
Sbjct: 121 RYIQSGVVSAYSRIFPPL 138

[Close]

BLAST of Cp4.1LG18g00470 vs. NCBI nr
Match: gi|449435653|ref|XP_004135609.1| (PREDICTED: SOSS complex subunit B homolog [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 5.6e-68
Identity = 128/139 (92.09%), Postives = 133/139 (95.68%), Query Frame = 1


Query: 1   MMISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVV 60
           MMI LKDLVPAAQN VNTQFIVL+KGMTT+EGQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 60

Query: 61  EPSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120
           EPSDI+RLTNGIFSYSRNNNLVLRAGKRGK+EKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of Cp4.1LG18g00470 vs. NCBI nr
Match: gi|659099487|ref|XP_008450623.1| (PREDICTED: SOSS complex subunit B homolog [Cucumis melo])

HSP 1 Score: 265.4 bits (677), Expect = 5.6e-68
Identity = 128/139 (92.09%), Postives = 133/139 (95.68%), Query Frame = 1


Query: 1   MMISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVV 60
           MMI LKDLVPAAQN VNTQFIVL+KGMTT+EGQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61

Query: 61  EPSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120
           EPSDI+RLTNGIFSYSRNNNLVLRAGKRGK+EKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 122 KYVKESVLSPYSRIFPPIR 140

[Close]

BLAST of Cp4.1LG18g00470 vs. NCBI nr
Match: gi|470108827|ref|XP_004290710.1| (PREDICTED: SOSS complex subunit B homolog [Fragaria vesca subsp. vesca])

HSP 1 Score: 219.9 bits (559), Expect = 2.7e-54
Identity = 102/136 (75.00%), Postives = 123/136 (90.44%), Query Frame = 1


Query: 2   MISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61
           M+SLKD+VPAA+NN++T+FI+LDKG  TIEGQNKTC +LVADETAAVHFQLWG+ECD  E
Sbjct: 1   MVSLKDIVPAAENNIDTRFILLDKGSNTIEGQNKTCLALVADETAAVHFQLWGDECDAFE 60

Query: 62  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSKK 121
           PSDI++L NGIFSY+R   LVLRAGKRG+VEKVGEF M+FVETPNMSEI WVPD  NSKK
Sbjct: 61  PSDIIQLYNGIFSYNR-GTLVLRAGKRGRVEKVGEFTMLFVETPNMSEIRWVPDPNNSKK 120

Query: 122 YVKESVLSPYSRIFPP 138
           +++++V+SP+SRIFPP
Sbjct: 121 FIQDAVISPHSRIFPP 135

[Close]

BLAST of Cp4.1LG18g00470 vs. NCBI nr
Match: gi|1021037347|gb|KZM95130.1| (hypothetical protein DCAR_018372 [Daucus carota subsp. sativus])

HSP 1 Score: 219.2 bits (557), Expect = 4.6e-54
Identity = 101/137 (73.72%), Postives = 118/137 (86.13%), Query Frame = 1


Query: 2   MISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61
           M+SLKD+ PAAQNN+NT+FI+LDKG   +E Q KTC +LVADETA+VHFQ WGEEC+  E
Sbjct: 1   MVSLKDIAPAAQNNINTRFILLDKGRIMLESQQKTCIALVADETASVHFQFWGEECEAFE 60

Query: 62  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSKK 121
           P DI+RLTNGIFSY+R+N+ VLRAGKRGK EKVGEF MVFVETPNMSEI WVPD  NSK 
Sbjct: 61  PGDIIRLTNGIFSYNRSNSFVLRAGKRGKAEKVGEFTMVFVETPNMSEIRWVPDPNNSKN 120

Query: 122 YVKESVLSPYSRIFPPI 139
           YVKE+VLS +SR+FPP+
Sbjct: 121 YVKEAVLSSHSRLFPPM 137

[Close]

BLAST of Cp4.1LG18g00470 vs. NCBI nr
Match: gi|147777092|emb|CAN67844.1| (hypothetical protein VITISV_016667 [Vitis vinifera])

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-52
Identity = 99/137 (72.26%), Postives = 120/137 (87.59%), Query Frame = 1


Query: 2   MISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61
           M+SLKD+VPAAQNN+NTQFI+LDKG  T+EG+ KTC +LVADETAAVHFQ+WG+ECD  E
Sbjct: 87  MLSLKDMVPAAQNNINTQFIILDKGKMTLEGKYKTCLTLVADETAAVHFQMWGDECDAFE 146

Query: 62  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSKK 121
             DI+RL +GIFSY+R NNLVLRAGK+GK EKVGEF M FVETPNMSEI W+PD +N KK
Sbjct: 147 GGDIIRLVDGIFSYNR-NNLVLRAGKKGKAEKVGEFCMAFVETPNMSEIRWIPDPSNPKK 206

Query: 122 YVKESVLSPYSRIFPPI 139
           YV+++V+SP+S IFPP+
Sbjct: 207 YVQDAVISPHSHIFPPV 222

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g00470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SOSSB_DICDI	1.5e-15	37.96	SOSS complex subunit B homolog OS=Dictyostelium discoideum GN=DDB_G0279223 PE=3 ...	[more]
SOSSB_DROME	2.7e-14	41.67	SOSS complex subunit B homolog OS=Drosophila melanogaster GN=CG5181 PE=2 SV=1	[more]
SOSB1_BOVIN	9.8e-12	37.96	SOSS complex subunit B1 OS=Bos taurus GN=NABP2 PE=2 SV=1	[more]
SOSB1_HUMAN	9.8e-12	37.96	SOSS complex subunit B1 OS=Homo sapiens GN=NABP2 PE=1 SV=1	[more]
SOSB1_MOUSE	9.8e-12	37.96	SOSS complex subunit B1 OS=Mus musculus GN=Nabp2 PE=1 SV=1	[more]

BLAST of Cp4.1LG18g00470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW03_CUCSA	3.9e-68	92.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569370 PE=4 SV=1	[more]
A0A162A4D5_DAUCA	3.2e-54	73.72	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018372 PE=4 SV=1	[more]
A5BEN8_VITVI	8.0e-53	72.26	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016667 PE=4 SV=1	[more]
F6HQ33_VITVI	8.0e-53	72.26	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g01040 PE=4 SV=...	[more]
W9SJC1_9ROSA	8.0e-53	73.57	Uncharacterized protein OS=Morus notabilis GN=L484_020432 PE=4 SV=1	[more]

BLAST of Cp4.1LG18g00470 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63690.1	1.1e-48	61.59	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of Cp4.1LG18g00470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435653\|ref\|XP_004135609.1\|	5.6e-68	92.09	PREDICTED: SOSS complex subunit B homolog [Cucumis sativus]	[more]
gi\|659099487\|ref\|XP_008450623.1\|	5.6e-68	92.09	PREDICTED: SOSS complex subunit B homolog [Cucumis melo]	[more]
gi\|470108827\|ref\|XP_004290710.1\|	2.7e-54	75.00	PREDICTED: SOSS complex subunit B homolog [Fragaria vesca subsp. vesca]	[more]
gi\|1021037347\|gb\|KZM95130.1\|	4.6e-54	73.72	hypothetical protein DCAR_018372 [Daucus carota subsp. sativus]	[more]
gi\|147777092\|emb\|CAN67844.1\|	1.1e-52	72.26	hypothetical protein VITISV_016667 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g00470.1	Cp4.1LG18g00470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 3..114 score: 9.3
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 2..115 score: 7.42
None	No IPR available	PANTHER	PTHR13356	OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED	coord: 2..138 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g00470	Cucsa.181880	Cucumber (Gy14) v1	cgycpeB0499
Cp4.1LG18g00470	CmaCh10G011240	Cucurbita maxima (Rimu)	cmacpeB081
Cp4.1LG18g00470	CmoCh10G012030	Cucurbita moschata (Rifu)	cmocpeB056
Cp4.1LG18g00470	Cla005193	Watermelon (97103) v1	cpewmB351
Cp4.1LG18g00470	Csa1G569370	Cucumber (Chinese Long) v2	cpecuB353
Cp4.1LG18g00470	MELO3C015303	Melon (DHL92) v3.5.1	cpemeB331
Cp4.1LG18g00470	ClCG03G017360	Watermelon (Charleston Gray)	cpewcgB323
Cp4.1LG18g00470	CSPI01G26430	Wild cucumber (PI 183967)	cpecpiB354
Cp4.1LG18g00470	Lsi06G001080	Bottle gourd (USVL1VR-Ls)	cpelsiB302
Cp4.1LG18g00470	MELO3C015303.2	Melon (DHL92) v3.6.1	cpemedB389
Cp4.1LG18g00470	CsaV3_1G038790	Cucumber (Chinese Long) v3	cpecucB0432
Cp4.1LG18g00470	Bhi02G001726	Wax gourd	cpewgoB0462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g00470	Cucurbita pepo (Zucchini)	cpecpeB366
Cp4.1LG18g00470	Cucurbita maxima (Rimu)	cmacpeB134
Cp4.1LG18g00470	Cucurbita moschata (Rifu)	cmocpeB110
Cp4.1LG18g00470	Watermelon (Charleston Gray)	cpewcgB328
Cp4.1LG18g00470	Watermelon (97103) v1	cpewmB358
Cp4.1LG18g00470	Cucumber (Gy14) v2	cgybcpeB043
Cp4.1LG18g00470	Silver-seed gourd	carcpeB0346
Cp4.1LG18g00470	Wax gourd	cpewgoB0470
Cp4.1LG18g00470	Wax gourd	cpewgoB0472