Cp4.1LG18g00280 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g00280
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionATP-dependent DNA helicase pcrA
LocationCp4.1LG18 : 396136 .. 396574 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTTGTTCGTGTTCCGCCCTCGAACACGAACAAGTTGGTGGTAAAGGGCTTATGCTATGCTGTAATGAAAGAAAACGAACCCGGAGCTCTTGAAGTGGAGGTTGCTTCTTTTTTCTTTTCTTCCTATTATAAACTATTTTAATTAGAATATTCGAATTTTGTAGCTATCAGAAACACCTAAAGTTTATAAGGAACTCGGGCCAAAAGAGGTGGGCGCACATAGCCAATGGGTCGATGGATCGGATTTCACCCGAGGCCAGGCTTCGACATGCAGGTTTGAACGATCTATTTGATTTTGAATGGTTAAAGACATGCTCGTTAAAGTTTGATTATATAAACTATACGATTTTGTTCGTTTTAGGAGGCATTTCATTATGTTTCCACCAACAATTTTGGACAAACACTTTGAGAGATTGATAAGATTTGATGAGAGA

mRNA sequence

ATGGCACTTCTATCAGAAACACCTAAAGTTTATAAGGAACTCGGGCCAAAAGAGGTGGGCGCACATAGCCAATGGGTCGATGGATCGGATTTCACCCGAGGCCAGGCTTCGACATGCAGGAGGCATTTCATTATGTTTCCACCAACAATTTTGGACAAACACTTTGAGAGATTGATAAGATTTGATGAGAGA

Coding sequence (CDS)

ATGGCACTTCTATCAGAAACACCTAAAGTTTATAAGGAACTCGGGCCAAAAGAGGTGGGCGCACATAGCCAATGGGTCGATGGATCGGATTTCACCCGAGGCCAGGCTTCGACATGCAGGAGGCATTTCATTATGTTTCCACCAACAATTTTGGACAAACACTTTGAGAGATTGATAAGATTTGATGAGAGA

Protein sequence

MALLSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERLIRFDER
Homology
[Close]
BLAST of Cp4.1LG18g00280 vs. TrEMBL
Match: A0A0A0M1F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.7e-11
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 

Query: 4   LSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERL 59
           L+  PK YKE+ P E   H+QW DGSDFT GQA   RRH I+FPP +LDKH+E+L
Sbjct: 180 LNHPPKFYKEIEP-EPRKHTQWTDGSDFTEGQAYVNRRHCIVFPPKVLDKHYEKL 233

[Close]
BLAST of Cp4.1LG18g00280 vs. TrEMBL
Match: A0A067JHP3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23215 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.4e-09
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1 

Query: 4   LSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERLIRFDE 63
           L++ P  + E  P+    HS+W   SDFT GQAST RRH++ FPP   DKH+E+L++ D+
Sbjct: 200 LNQAPSFFVEQDPQP-RKHSKWQPASDFTGGQASTYRRHYLQFPPVSFDKHYEKLLQCDQ 259

Query: 64  R 65
           R
Sbjct: 260 R 259

[Close]
BLAST of Cp4.1LG18g00280 vs. TrEMBL
Match: B9RFI7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434920 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-08
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 4   LSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERLIRFDE 63
           LS+ P  ++E  P+    H+ W   SDFTRGQAST RRH+++FPP  LD+H+E+L++ D 
Sbjct: 202 LSQAPTFHEETDPQP-RKHTIWRLTSDFTRGQASTFRRHYLVFPPGALDRHYEKLLQCDH 261

Query: 64  R 65
           R
Sbjct: 262 R 261

[Close]
BLAST of Cp4.1LG18g00280 vs. TrEMBL
Match: A0A124SEA9_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_022275 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-08
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 4   LSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERLIRFDE 63
           L++ P+  +E+ P+    H+QW   +DFT+ QAS CRRH I+FPP +LDK +E+L++ D 
Sbjct: 127 LNQQPQFGREINPQP-RKHTQWKQTTDFTQAQASICRRHSIIFPPGVLDKQYEKLLQCDH 186

Query: 64  R 65
           R
Sbjct: 187 R 186

[Close]
BLAST of Cp4.1LG18g00280 vs. TrEMBL
Match: A0A067JHG0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23214 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-08
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1 

Query: 4   LSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERLIRFDE 63
           L+  PK++ E  P +   HS W    DFT GQ ST RRH++ FPP   DKH+E+L++ D+
Sbjct: 200 LNRVPKLHVEKDP-QARKHSDWKKADDFTGGQVSTYRRHYLQFPPGSFDKHYEKLLKCDQ 259

Query: 64  R 65
           R
Sbjct: 260 R 259

[Close]
BLAST of Cp4.1LG18g00280 vs. TAIR10
Match: AT2G24100.1 (AT2G24100.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 7.6e-10
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 3   LLSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERLIRFD 62
           +L+  P  ++E  P+    H+ W   SDFT GQAS  R+HF+  PP I++KHFE+L++ D
Sbjct: 183 VLARRPLFFRETNPQP-RKHTLWQATSDFTDGQASMNRQHFLQCPPGIMNKHFEKLVQCD 242

Query: 63  ER 65
            R
Sbjct: 243 HR 243

[Close]
BLAST of Cp4.1LG18g00280 vs. TAIR10
Match: AT4G30780.1 (AT4G30780.1 unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 5.5e-08
Identity = 25/62 (40.32%), Postives = 38/62 (61.29%), Query Frame = 1 

Query: 3   LLSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERLIRFD 62
           +L+  P  ++E  P+    H+ W   SDFT GQAS  R+HF+     I++KHFE+L++ D
Sbjct: 210 VLARQPLFFRETNPQP-RKHTLWQATSDFTDGQASMNRQHFLQCAQGIMNKHFEKLVQCD 269

Query: 63  ER 65
            R
Sbjct: 270 HR 270

[Close]
BLAST of Cp4.1LG18g00280 vs. TAIR10
Match: AT3G05770.1 (AT3G05770.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 2.3e-06
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 1 

Query: 4   LSETPKVYKELGPKEVGAHSQWVD-GSDFTRGQASTCRRHFIMFPPTILDKHFERLI 60
           L + P  + E  P + G H+QW     DFT  QAS  RRH + FPP +L K+ E+L+
Sbjct: 154 LKKRPTFFTETNP-QAGKHTQWKQLDYDFTGDQASYYRRHTLHFPPGVLQKNLEKLL 209

[Close]
BLAST of Cp4.1LG18g00280 vs. TAIR10
Match: AT1G54300.1 (AT1G54300.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.1e-06
Identity = 23/57 (40.35%), Postives = 32/57 (56.14%), Query Frame = 1 

Query: 4   LSETPKVYKELGPKEVGAHSQWVD-GSDFTRGQASTCRRHFIMFPPTILDKHFERLI 60
           L + P  + E  P + G H+QW     DFT   AS  RRH + FPP +L K+ E+L+
Sbjct: 81  LKKRPTFFIETNP-QAGKHTQWKQLDHDFTGDHASNYRRHTLHFPPGVLQKNLEKLV 136

[Close]
BLAST of Cp4.1LG18g00280 vs. NCBI nr
Match: gi|700210915|gb|KGN66011.1| (hypothetical protein Csa_1G561420 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 

Query: 4   LSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERL 59
           L+  PK YKE+ P E   H+QW DGSDFT GQA   RRH I+FPP +LDKH+E+L
Sbjct: 180 LNHPPKFYKEIEP-EPRKHTQWTDGSDFTEGQAYVNRRHCIVFPPKVLDKHYEKL 233

[Close]
BLAST of Cp4.1LG18g00280 vs. NCBI nr
Match: gi|659099332|ref|XP_008450546.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 

Query: 4   LSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERL 59
           L+  PK YKE+ P E   H+QW DGSDFT GQA   RRH I+FPP +LDKH+E+L
Sbjct: 180 LNHPPKFYKEIEP-EPRKHTQWTDGSDFTEGQAYVNRRHCIVFPPKVLDKHYEKL 233

[Close]
BLAST of Cp4.1LG18g00280 vs. NCBI nr
Match: gi|659099334|ref|XP_008450547.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X2 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 4.7e-09
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1 

Query: 4   LSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERL 59
           L+  PK YKE+ P E   H+QW DGSDFT GQA    RH I+FPP +LDKH+E+L
Sbjct: 180 LNHPPKFYKEIEP-EPRKHTQWTDGSDFTEGQAYV-NRHCIVFPPKVLDKHYEKL 232

[Close]
BLAST of Cp4.1LG18g00280 vs. NCBI nr
Match: gi|698519484|ref|XP_009804610.1| (PREDICTED: uncharacterized protein LOC104249811 [Nicotiana sylvestris])

HSP 1 Score: 68.2 bits (165), Expect = 6.1e-09
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1 

Query: 4   LSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERLIRFDE 63
           L++ P  Y+E  P+    H+ W   SDFT GQA T RRH++ FPP +LDKH+E+L+ +D 
Sbjct: 236 LNQPPSFYRETNPQP-RKHTLWQQTSDFTGGQAPTYRRHWVRFPPGVLDKHYEKLLHYDA 295

Query: 64  R 65
           R
Sbjct: 296 R 295

[Close]
BLAST of Cp4.1LG18g00280 vs. NCBI nr
Match: gi|697127506|ref|XP_009617801.1| (PREDICTED: uncharacterized protein LOC104110084 [Nicotiana tomentosiformis])

HSP 1 Score: 67.8 bits (164), Expect = 7.9e-09
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1 

Query: 4   LSETPKVYKELGPKEVGAHSQWVDGSDFTRGQASTCRRHFIMFPPTILDKHFERLIRFDE 63
           L++ P  Y+E  P+    H+ W   SDFT GQA T RRH+I FPP +LDKH+E+L+ +D 
Sbjct: 229 LNQPPYFYRETNPQP-RKHTLWQQTSDFTGGQAPTYRRHWIRFPPGVLDKHYEKLLHYDA 288

Query: 64  R 65
           R
Sbjct: 289 R 288

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g00280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g00280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M1F5_CUCSA7.7e-1160.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1[more]
A0A067JHP3_JATCU9.4e-0947.54Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23215 PE=4 SV=1[more]
B9RFI7_RICCO1.6e-0849.18Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434920 PE=4 SV=1[more]
A0A124SEA9_CYNCS2.1e-0845.90Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_022275 PE=4 ... [more]
A0A067JHG0_JATCU2.1e-0845.90Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23214 PE=4 SV=1[more]
BLAST of Cp4.1LG18g00280 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G24100.17.6e-1043.55 unknown protein[more]
AT4G30780.15.5e-0840.32 unknown protein[more]
AT3G05770.12.3e-0642.11 unknown protein[more]
AT1G54300.15.1e-0640.35 unknown protein[more]
BLAST of Cp4.1LG18g00280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210915|gb|KGN66011.1|1.1e-1060.00hypothetical protein Csa_1G561420 [Cucumis sativus][more]
gi|659099332|ref|XP_008450546.1|1.1e-1060.00PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo][more]
gi|659099334|ref|XP_008450547.1|4.7e-0958.18PREDICTED: uncharacterized protein LOC103492114 isoform X2 [Cucumis melo][more]
gi|698519484|ref|XP_009804610.1|6.1e-0947.54PREDICTED: uncharacterized protein LOC104249811 [Nicotiana sylvestris][more]
gi|697127506|ref|XP_009617801.1|7.9e-0949.18PREDICTED: uncharacterized protein LOC104110084 [Nicotiana tomentosiformis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g00280.1Cp4.1LG18g00280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33494FAMILY NOT NAMEDcoord: 25..64
score: 1.1
NoneNo IPR availablePANTHERPTHR33494:SF1SUBFAMILY NOT NAMEDcoord: 25..64
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g00280Cucumber (Chinese Long) v3cpecucB0432
Cp4.1LG18g00280Wax gourdcpewgoB0470
Cp4.1LG18g00280Cucumber (Gy14) v1cgycpeB0050
Cp4.1LG18g00280Cucurbita maxima (Rimu)cmacpeB081
Cp4.1LG18g00280Cucurbita moschata (Rifu)cmocpeB056
Cp4.1LG18g00280Wild cucumber (PI 183967)cpecpiB354
Cp4.1LG18g00280Cucumber (Chinese Long) v2cpecuB353
Cp4.1LG18g00280Bottle gourd (USVL1VR-Ls)cpelsiB302
Cp4.1LG18g00280Watermelon (Charleston Gray)cpewcgB328
Cp4.1LG18g00280Watermelon (97103) v1cpewmB357
Cp4.1LG18g00280Melon (DHL92) v3.5.1cpemeB331
Cp4.1LG18g00280Cucumber (Gy14) v2cgybcpeB043
Cp4.1LG18g00280Melon (DHL92) v3.6.1cpemedB389