Cp4.1LG17g11060 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g11060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDUF4228 domain protein
LocationCp4.1LG17 : 8352729 .. 8353412 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAACAGCGATATCATCAGAAGAACATGTTCTAAAATTAGTTCATCCAGGAAAACGCATCGAAATCTACACTAAACCAATACAAGCAGCTGAAATTCTGAGAAAATACCCCAAATTTTGCATCACAAGGCCCGATGTGTTCAAATTTCCATGGATCGTTGTCAGGTCTGATTCCCTTTTGGTCCCCGGAAAAGTGTTCTTTCTCGTCCCTAAGCGTACGCTCTACCGCCTCTTGAAGGCCAATCAGCCGCCTGATCGCTCGCTAATACCCTTAGGGCCATGTACAAAGAATGCTGGAATGACTCCGAGACGGCTGAGAGTGGCCGGGGAAGACGGTGGGAGGAGAGGTCGGAAGAGGTCCGATATTGAGCCGAGGCAACCACGGTCGCCGTGGACCGTCGTAGGCGGCAAGAGAAGTGTGAGATATTCTTCTTCGCATGTACATGACTGTTACAAGTGCGGCGGCGATGTTTCTAGCGTCGAAGTTCCGGAACGGAATGGAGAGGGGAAATGTAAAACGACGTCGTTGAGATCTTGTATGAAGAAGCCTGGGAGTGCTCCTCGGTTGGTTAATCCAAGAGTGGGATTTTTAATTCCAGGTGAGAATGTTGCTGTACCTGTAACCAAACAGAGGACGGTCCTTGACCGTTTCAAAACTTGCAACCTCTTTAATCGTTGA

mRNA sequence

ATGGGAAGAACAGCGATATCATCAGAAGAACATGTTCTAAAATTAGTTCATCCAGGAAAACGCATCGAAATCTACACTAAACCAATACAAGCAGCTGAAATTCTGAGAAAATACCCCAAATTTTGCATCACAAGGCCCGATGTGTTCAAATTTCCATGGATCGTTGTCAGGTCTGATTCCCTTTTGGTCCCCGGAAAAGTGTTCTTTCTCGTCCCTAAGCGTACGCTCTACCGCCTCTTGAAGGCCAATCAGCCGCCTGATCGCTCGCTAATACCCTTAGGGCCATGTACAAAGAATGCTGGAATGACTCCGAGACGGCTGAGAGTGGCCGGGGAAGACGGTGGGAGGAGAGGTCGGAAGAGGTCCGATATTGAGCCGAGGCAACCACGGTCGCCGTGGACCGTCGTAGGCGGCAAGAGAAGTGTGAGATATTCTTCTTCGCATGTACATGACTGTTACAAGTGCGGCGGCGATGTTTCTAGCGTCGAAGTTCCGGAACGGAATGGAGAGGGGAAATGTAAAACGACGTCGTTGAGATCTTGTATGAAGAAGCCTGGGAGTGCTCCTCGGTTGGTTAATCCAAGAGTGGGATTTTTAATTCCAGGTGAGAATGTTGCTGTACCTGTAACCAAACAGAGGACGGTCCTTGACCGTTTCAAAACTTGCAACCTCTTTAATCGTTGA

Coding sequence (CDS)

ATGGGAAGAACAGCGATATCATCAGAAGAACATGTTCTAAAATTAGTTCATCCAGGAAAACGCATCGAAATCTACACTAAACCAATACAAGCAGCTGAAATTCTGAGAAAATACCCCAAATTTTGCATCACAAGGCCCGATGTGTTCAAATTTCCATGGATCGTTGTCAGGTCTGATTCCCTTTTGGTCCCCGGAAAAGTGTTCTTTCTCGTCCCTAAGCGTACGCTCTACCGCCTCTTGAAGGCCAATCAGCCGCCTGATCGCTCGCTAATACCCTTAGGGCCATGTACAAAGAATGCTGGAATGACTCCGAGACGGCTGAGAGTGGCCGGGGAAGACGGTGGGAGGAGAGGTCGGAAGAGGTCCGATATTGAGCCGAGGCAACCACGGTCGCCGTGGACCGTCGTAGGCGGCAAGAGAAGTGTGAGATATTCTTCTTCGCATGTACATGACTGTTACAAGTGCGGCGGCGATGTTTCTAGCGTCGAAGTTCCGGAACGGAATGGAGAGGGGAAATGTAAAACGACGTCGTTGAGATCTTGTATGAAGAAGCCTGGGAGTGCTCCTCGGTTGGTTAATCCAAGAGTGGGATTTTTAATTCCAGGTGAGAATGTTGCTGTACCTGTAACCAAACAGAGGACGGTCCTTGACCGTTTCAAAACTTGCAACCTCTTTAATCGTTGA

Protein sequence

MGRTAISSEEHVLKLVHPGKRIEIYTKPIQAAEILRKYPKFCITRPDVFKFPWIVVRSDSLLVPGKVFFLVPKRTLYRLLKANQPPDRSLIPLGPCTKNAGMTPRRLRVAGEDGGRRGRKRSDIEPRQPRSPWTVVGGKRSVRYSSSHVHDCYKCGGDVSSVEVPERNGEGKCKTTSLRSCMKKPGSAPRLVNPRVGFLIPGENVAVPVTKQRTVLDRFKTCNLFNR
Homology
[Close]
BLAST of Cp4.1LG17g11060 vs. TrEMBL
Match: A0A0A0K557_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G339650 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.9e-62
Identity = 141/246 (57.32%), Postives = 162/246 (65.85%), Query Frame = 1 

Query: 1   MGRTAISSEEHVLKLVHPGKRIEIYTKPIQAAEILRKYPKFCITRPDVFKFPWIVVRSDS 60
           MGRT   +E+ VLKL+HPGK +E YTKPI A+E+L+KYPKFCITRPDVFK+PWIVVRSDS
Sbjct: 1   MGRTT-GTEKGVLKLIHPGKHVETYTKPILASEVLKKYPKFCITRPDVFKYPWIVVRSDS 60

Query: 61  LLVPGKVFFLVPKRTLYRLLKANQPPDRSL-------------IPLGPCTKNAGMTPRRL 120
           LLVPGKVF LVPKRTL+RLLK N PPD SL              P  P   NAG TP+ L
Sbjct: 61  LLVPGKVFLLVPKRTLHRLLKTNHPPDGSLPSLLSSPLSRSFSRPSLPLRSNAGTTPKHL 120

Query: 121 --------RVAGEDGGRRGRKRSDIEPRQPRSPWTVVGGKRS-VRYSSSHVHDCYKCGG- 180
                   +  GE  G R RK + +E      P   VG KRS VRYSSSHVHDCYKCG  
Sbjct: 121 THLRRSQSKPLGEVDGIRNRKNAHVEWWLSMLPPHGVGNKRSTVRYSSSHVHDCYKCGSV 180

Query: 181 ---DVSSVEVPERNGEGKCK---TTSLRSCMKKPGSAPRLVNPRVGFLIPGENVAVPVTK 218
              D+S  +V    G G  K   TTSLRSCM+KPGSAPRL N +V F IP E++  PV K
Sbjct: 181 PSTDMSREDVENDRGGGYRKWKTTTSLRSCMRKPGSAPRLANLKVRFSIPNEDIVEPVAK 240

[Close]
BLAST of Cp4.1LG17g11060 vs. TrEMBL
Match: V4VUD1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023784mg PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.9e-26
Identity = 83/226 (36.73%), Postives = 120/226 (53.10%), Query Frame = 1 

Query: 5   AISSEEHVLKLVHPGKRIEIYTKPIQAAEILRKYPKFCITRPDVFKFPWIVVRSDSLLVP 64
           A++SE+ VLKLVHPG+ +EI   PI AAE++ K P+ CITRPD+FK+PWIVV+ +S+L  
Sbjct: 3   AVASEKGVLKLVHPGRYVEIRRAPITAAEVMDKNPRHCITRPDIFKYPWIVVKPESVLNL 62

Query: 65  GKVFFLVPKRTLYRLLKANQPPD------RSLIPLG--PCTKNAGMTPR----------- 124
           G+VFF+VP RT+Y LLKA   PD      +S  P G  P    AGMTP+           
Sbjct: 63  GRVFFIVPNRTIYHLLKARGLPDQLSRQSQSPSPTGTSPLKAYAGMTPKHQENIQFLEQL 122

Query: 125 -------RLRVAGEDGGRRGRKRSDIEPRQPRSPWTVVGGKRSVRYSSSHVHDCYKCGGD 184
                        ++ GRR RK  ++E   P +  T +G   +  Y S+           
Sbjct: 123 MQAMSSYETSPEEQEHGRRFRKEYNVE-SWPENYATRIGFFNAKEYYSN-------ISSK 182

Query: 185 VSSVEVPERNGEGKCKTTSLRSCMKKPGSAPRLVNPRVGFLIPGEN 205
            S  E  +   E   + T L+SC++K  S  +  + +V F++P E+
Sbjct: 183 FSEREDKDTESEQTKQVTVLKSCLRKQDSVRKSRHLKVSFVLPAED 220

[Close]
BLAST of Cp4.1LG17g11060 vs. TrEMBL
Match: M1DYN6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400046108 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25
Identity = 57/92 (61.96%), Postives = 77/92 (83.70%), Query Frame = 1 

Query: 9   EEHVLKLVHPGKRIEIYTKPIQAAEILRKYPKFCITRPDVFKFPWIVVRSDSLLVPGKVF 68
           EE +LKLVHPG+R+E +TKPI AAE+L+KYP+ CI RPDVFKFPWIVVR +++L+PGKVF
Sbjct: 7   EEGLLKLVHPGRRVETHTKPIIAAEVLKKYPRHCIARPDVFKFPWIVVRPEAVLLPGKVF 66

Query: 69  FLVPKRTLYRLLKANQPPDRSLIPLGPCTKNA 101
           ++VPK+T+Y LLKA +  ++ L+PL   T N+
Sbjct: 67  YIVPKKTIYDLLKAKRQQNQ-LMPLAIPTLNS 97

[Close]
BLAST of Cp4.1LG17g11060 vs. TrEMBL
Match: K4CTV7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-24
Identity = 55/85 (64.71%), Postives = 74/85 (87.06%), Query Frame = 1 

Query: 9  EEHVLKLVHPGKRIEIYTKPIQAAEILRKYPKFCITRPDVFKFPWIVVRSDSLLVPGKVF 68
          EE +LKLVHPG+R+E +TKPI AAE+L+KYP+ CI RPDVFKFPWIVVR +++L+PGKVF
Sbjct: 7  EEGLLKLVHPGRRVETHTKPIIAAEVLKKYPRHCIARPDVFKFPWIVVRPEAVLLPGKVF 66

Query: 69 FLVPKRTLYRLLKANQPPDRSLIPL 94
          ++VPK+T+Y LLKA +  ++ L+PL
Sbjct: 67 YIVPKKTIYDLLKAKRQQNQ-LMPL 90

[Close]
BLAST of Cp4.1LG17g11060 vs. TrEMBL
Match: A0A068U6Q6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016372001 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-23
Identity = 54/76 (71.05%), Postives = 64/76 (84.21%), Query Frame = 1 

Query: 7  SSEEHVLKLVHPGKRIEIYTKPIQAAEILRKYPKFCITRPDVFKFPWIVVRSDSLLVPGK 66
          + E  VLKLVHPG+ +EI+ +PI AAEIL KYP+ CI RPDVFKFP+IVVR +SLL+PGK
Sbjct: 5  TKERGVLKLVHPGRHVEIHREPITAAEILSKYPRHCIARPDVFKFPYIVVRPESLLLPGK 64

Query: 67 VFFLVPKRTLYRLLKA 83
          VF+LVP RTLY LLKA
Sbjct: 65 VFYLVPNRTLYNLLKA 80

[Close]
BLAST of Cp4.1LG17g11060 vs. NCBI nr
Match: gi|700189360|gb|KGN44593.1| (hypothetical protein Csa_7G339650 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 9.9e-62
Identity = 141/246 (57.32%), Postives = 162/246 (65.85%), Query Frame = 1 

Query: 1   MGRTAISSEEHVLKLVHPGKRIEIYTKPIQAAEILRKYPKFCITRPDVFKFPWIVVRSDS 60
           MGRT   +E+ VLKL+HPGK +E YTKPI A+E+L+KYPKFCITRPDVFK+PWIVVRSDS
Sbjct: 1   MGRTT-GTEKGVLKLIHPGKHVETYTKPILASEVLKKYPKFCITRPDVFKYPWIVVRSDS 60

Query: 61  LLVPGKVFFLVPKRTLYRLLKANQPPDRSL-------------IPLGPCTKNAGMTPRRL 120
           LLVPGKVF LVPKRTL+RLLK N PPD SL              P  P   NAG TP+ L
Sbjct: 61  LLVPGKVFLLVPKRTLHRLLKTNHPPDGSLPSLLSSPLSRSFSRPSLPLRSNAGTTPKHL 120

Query: 121 --------RVAGEDGGRRGRKRSDIEPRQPRSPWTVVGGKRS-VRYSSSHVHDCYKCGG- 180
                   +  GE  G R RK + +E      P   VG KRS VRYSSSHVHDCYKCG  
Sbjct: 121 THLRRSQSKPLGEVDGIRNRKNAHVEWWLSMLPPHGVGNKRSTVRYSSSHVHDCYKCGSV 180

Query: 181 ---DVSSVEVPERNGEGKCK---TTSLRSCMKKPGSAPRLVNPRVGFLIPGENVAVPVTK 218
              D+S  +V    G G  K   TTSLRSCM+KPGSAPRL N +V F IP E++  PV K
Sbjct: 181 PSTDMSREDVENDRGGGYRKWKTTTSLRSCMRKPGSAPRLANLKVRFSIPNEDIVEPVAK 240

[Close]
BLAST of Cp4.1LG17g11060 vs. NCBI nr
Match: gi|567902232|ref|XP_006443604.1| (hypothetical protein CICLE_v10023784mg [Citrus clementina])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 83/226 (36.73%), Postives = 120/226 (53.10%), Query Frame = 1 

Query: 5   AISSEEHVLKLVHPGKRIEIYTKPIQAAEILRKYPKFCITRPDVFKFPWIVVRSDSLLVP 64
           A++SE+ VLKLVHPG+ +EI   PI AAE++ K P+ CITRPD+FK+PWIVV+ +S+L  
Sbjct: 3   AVASEKGVLKLVHPGRYVEIRRAPITAAEVMDKNPRHCITRPDIFKYPWIVVKPESVLNL 62

Query: 65  GKVFFLVPKRTLYRLLKANQPPD------RSLIPLG--PCTKNAGMTPR----------- 124
           G+VFF+VP RT+Y LLKA   PD      +S  P G  P    AGMTP+           
Sbjct: 63  GRVFFIVPNRTIYHLLKARGLPDQLSRQSQSPSPTGTSPLKAYAGMTPKHQENIQFLEQL 122

Query: 125 -------RLRVAGEDGGRRGRKRSDIEPRQPRSPWTVVGGKRSVRYSSSHVHDCYKCGGD 184
                        ++ GRR RK  ++E   P +  T +G   +  Y S+           
Sbjct: 123 MQAMSSYETSPEEQEHGRRFRKEYNVE-SWPENYATRIGFFNAKEYYSN-------ISSK 182

Query: 185 VSSVEVPERNGEGKCKTTSLRSCMKKPGSAPRLVNPRVGFLIPGEN 205
            S  E  +   E   + T L+SC++K  S  +  + +V F++P E+
Sbjct: 183 FSEREDKDTESEQTKQVTVLKSCLRKQDSVRKSRHLKVSFVLPAED 220

[Close]
BLAST of Cp4.1LG17g11060 vs. NCBI nr
Match: gi|661892716|emb|CDP03874.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 115.9 bits (289), Expect = 9.0e-23
Identity = 54/76 (71.05%), Postives = 64/76 (84.21%), Query Frame = 1 

Query: 7  SSEEHVLKLVHPGKRIEIYTKPIQAAEILRKYPKFCITRPDVFKFPWIVVRSDSLLVPGK 66
          + E  VLKLVHPG+ +EI+ +PI AAEIL KYP+ CI RPDVFKFP+IVVR +SLL+PGK
Sbjct: 5  TKERGVLKLVHPGRHVEIHREPITAAEILSKYPRHCIARPDVFKFPYIVVRPESLLLPGK 64

Query: 67 VFFLVPKRTLYRLLKA 83
          VF+LVP RTLY LLKA
Sbjct: 65 VFYLVPNRTLYNLLKA 80

[Close]
BLAST of Cp4.1LG17g11060 vs. NCBI nr
Match: gi|643713725|gb|KDP26390.1| (hypothetical protein JCGZ_17548 [Jatropha curcas])

HSP 1 Score: 115.9 bits (289), Expect = 9.0e-23
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1 

Query: 5   AISSEEHVLKLVHPGKRIEIYTKPIQAAEILRKYPKFCITRPDVFKFPWIVVRSDSLLVP 64
           ++S EE VLKLVHPG+ +EI+TKPI AAE+L+KYP+  +TRPDVFK+PWIVV+ +S+L  
Sbjct: 3   SVSGEEGVLKLVHPGRHVEIHTKPITAAEVLQKYPRHSVTRPDVFKYPWIVVKPESVLNL 62

Query: 65  GKVFFLVPKRTLYRLLKA-----NQPPDRSLI------------PLGPCTKNAGMTPRRL 108
           G+VFF+VP RT+Y L+KA      Q  ++S I               P   +AG TP+ L
Sbjct: 63  GRVFFIVPNRTIYNLVKAQRESQQQSQEKSQISKHHVKNKQVQNSSSPVKSHAGSTPKHL 122

[Close]
BLAST of Cp4.1LG17g11060 vs. NCBI nr
Match: gi|595791049|ref|XP_007199273.1| (hypothetical protein PRUPE_ppa022741mg [Prunus persica])

HSP 1 Score: 114.8 bits (286), Expect = 2.0e-22
Identity = 48/80 (60.00%), Postives = 69/80 (86.25%), Query Frame = 1 

Query: 5  AISSEEHVLKLVHPGKRIEIYTKPIQAAEILRKYPKFCITRPDVFKFPWIVVRSDSLLVP 64
          +I+ EE VLKLV PG+R+E++ +PI A E++RKYP+  ITRPD+F+FPWIVV+++++L P
Sbjct: 3  SITREEGVLKLVRPGRRVEVHKEPITAQEVMRKYPRHSITRPDIFEFPWIVVKAEAVLTP 62

Query: 65 GKVFFLVPKRTLYRLLKANQ 85
          GKVFF+VP RT+Y+LLKA +
Sbjct: 63 GKVFFIVPNRTIYQLLKARE 82

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g11060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g11060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K557_CUCSA6.9e-6257.32Uncharacterized protein OS=Cucumis sativus GN=Csa_7G339650 PE=4 SV=1[more]
V4VUD1_9ROSI7.9e-2636.73Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023784mg PE=4 SV=1[more]
M1DYN6_SOLTU5.1e-2561.96Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400046108 PE=4 SV=1[more]
K4CTV7_SOLLC1.5e-2464.71Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A068U6Q6_COFCA6.3e-2371.05Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016372001 PE=4 SV=1[more]
BLAST of Cp4.1LG17g11060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g11060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189360|gb|KGN44593.1|9.9e-6257.32hypothetical protein Csa_7G339650 [Cucumis sativus][more]
gi|567902232|ref|XP_006443604.1|1.1e-2536.73hypothetical protein CICLE_v10023784mg [Citrus clementina][more]
gi|661892716|emb|CDP03874.1|9.0e-2371.05unnamed protein product [Coffea canephora][more]
gi|643713725|gb|KDP26390.1|9.0e-2349.17hypothetical protein JCGZ_17548 [Jatropha curcas][more]
gi|595791049|ref|XP_007199273.1|2.0e-2260.00hypothetical protein PRUPE_ppa022741mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025322DUF4228_plant
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g11060.1Cp4.1LG17g11060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 1..103
score: 2.3
NoneNo IPR availablePANTHERPTHR33052FAMILY NOT NAMEDcoord: 6..83
score: 5.3
NoneNo IPR availablePANTHERPTHR33052:SF9SUBFAMILY NOT NAMEDcoord: 6..83
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g11060CmaCh08G002120Cucurbita maxima (Rimu)cmacpeB914
Cp4.1LG17g11060Cla014956Watermelon (97103) v1cpewmB317
Cp4.1LG17g11060Csa7G339650Cucumber (Chinese Long) v2cpecuB337
Cp4.1LG17g11060MELO3C021015Melon (DHL92) v3.5.1cpemeB294
Cp4.1LG17g11060ClCG09G009040Watermelon (Charleston Gray)cpewcgB285
Cp4.1LG17g11060CSPI07G14210Wild cucumber (PI 183967)cpecpiB338
Cp4.1LG17g11060Lsi02G020830Bottle gourd (USVL1VR-Ls)cpelsiB258
Cp4.1LG17g11060MELO3C021015.2Melon (DHL92) v3.6.1cpemedB342
Cp4.1LG17g11060CsaV3_7G025940Cucumber (Chinese Long) v3cpecucB0416
Cp4.1LG17g11060CsGy7G012820Cucumber (Gy14) v2cgybcpeB925
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g11060Cucurbita moschata (Rifu)cmocpeB851
Cp4.1LG17g11060Silver-seed gourdcarcpeB0125