Cp4.1LG17g10100 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g10100
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	D-alanine--poly (Phosphoribitol) ligase subunit 1
Location	Cp4.1LG17 : 7667110 .. 7669765 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCCATCCATTCAATTTCAATTCAATTCAATCCCATCTCCATTTTGTTCCAATCCAATTCATTTCCTCTCCAATTCATCCAATCCCACCTCCACCTCCACCTCCACCTCCAAATTCCCTCAACATTCATGGCGGATTCGCCACTGAAACCGCCGCTCCAGAGGCCCCCAGGCTACAAGGACCCAAGCGCCTCCGGTAGCTCAGCCTCCATCCCGGTCTCGAAGCCGCCGGCCGCCAGAAACAAGCCCCGTCTCCCGACCTCGTACAAGCCGAAGAAGAGGAAAAGCAGCTGCTGCAGGCTCTGCTGCTGCGTGTTCTGTTTCCTAATCCTGTTCCTGATCGTGGTGGTGTCCCTCGCCGGCGCCCTGTTCTACCTGATCTTCGACCCCAAGCTTCCCCTGTTCCACCTCCTCGCCTTCCGCATCTCCTCCTTCAAGGTCGCCCCGACCCCCGACGGGTCCTACCTGGACGCCCAGGTGTCCATCCGGGTGGAGTTCAAGAACCCCAACGACAAGCTGGCGATCAAGTACGGGAAGATCGAGTACGACGTGATGGTGGGGCAGGCGGCGGAGTTCGGGCAGCGGGAGCTGCAGGGGTTCACGCAGGGGAGGCGGAGCACGACGACGGTGAAGGCGGACTCCGGGGTGAAGGGGAAGATGCTGGGGGTGGAGGACTCGACGAGGCTGGTGTCCAAGTATCAGAGTAAGGCGATGGAGGTGAAAGTAGAGGCGAGGACGGCGGTGGGCGTGGTGGCTCAAGGCTGGGCGGTGGGTCCCATCCCCGTCAAATTGGATTGCGAGTCTAAATTGAAGAATATTGAGGCCGGTGATATGCCTACATGCAATATCAATCTACTTAGATGGTATGTTCTTCCTCCCCTTTTTTTTTTCTTTTTAATTATTATTATTGTTGGAGGTTCAAAGTCCCACGTCTCCTTAATTTAAGGAATAATCATGTGTTTATAATCAAGTAATATCATGTGTTTATAATCAAGTAATATCATGTGTTTATAATCAAGTAATATCTCCCCATTGGTATGAGGCTTTCGAGGAAGCCCAAAGCAAAGCCATAAGTGCCTATACTCAAAGTGGACAGTATCGTACCATTGTGGCATGAGAGCCTAGACAGTATCGTACCATTGTGGCATGAGAGCCTAGACAGTATCGTACCATTGTGGCATGAGAGCCTAGACAGTATCGTACCATTGTGGCATGAGAGCCTAGACAGTATCGTACCATTGTGGCATGAGAGCCTAGACAGTATCGTACCATTGTGGCATGAGAGCCTAGACAGTATCGTACCATTGTGGCATGAGAGCCTAGACAGGCATGAGAGCCTATGCTCAAAGTGGACAGTATCATACCATTGTTGAGAGTGGCATGAGAGCCTATGCTCAAAGTGGACAGTATCATACCATTGTTGAGAGTGGCATGAGAGCCTATGCTCAAAGTGGACAATATCATACTATTGTTGAGAGTGACATGAGAGCTCAAAATGGGTAGATAGGCTCTCACAGTACCATTGTGGCATGAGAGCCTAGGCCCAAAGTGGACAGTACCATTGTGGCATGAGAGCCTAGGCCCAAAGTGGACAGTACCATTGTGGCATGAGAGCCTAGGCCCAAAGTGGACAGTACCATTGTGGCATGAGAGCCTAGGCCCAAAGTGGACAGTACCATTGTGGCATGAGAGCCTAGGCCCAAAGTGGACAGTACCATTGTGGCATGAGAGCCTAGGCCCAAAGTGGACAGTACCATTGTGGCATGAGAGCCTAGGCCCAAAGTGGACAGTACCATTGTGGCATGAGAGCCTAGGCCCAAAGTGGACAGTACCATTGTGGCATGAGAGCCTAGGCCCAAAGTGGACAGTACCATTGTGGCATGAGAGCCTAGGCCCAAAGTGGACAGTACCATTGTGGCATGAGAGCCTAGGCCCAAAGTGGACAGTACCATTGTGGCATGAGAGCCTAGGCCCAAAGTGGACAGTACCATTGTGGCATGAGAGCCTAGGCTCAAAGTGGACAGTACCATTGTAGCATGAGAGCCTAGGCTCAAAGTGGACAGTACCATTGTAGCATGAGAGCTTAGGCTCAAAGTGAACAGTACCATTGTAGCATGAGAGCCTAAGCTCAAAGTGGACAGTACCATACTATTTCGTTGGTGTAACAATTATAATTATTATTTCCATTCTTTTTAATTATTTTGGATTAAAAACATCTTACTTAAATATTTTAAATATTAAATTTATAGAGATGTTTTTCCTTTTTTAAATTATATTAAAAATATTCTTAATTAATATAAAATATTTTGAATAAGGGAATAATGGTATATATTTTTTATTGCAGGATCAATATACGTGGATGAGGTTGCAATTGCTCGGAAGTCAATTATATTATATTATTTATTTTTATTGGGTTGAATATTTTATTGGAACTTTTTTCTTTTTTTCCTTTTTTTAATCGAATTAATTTTTCTTAAATATTACGACTTTAGAACGTCAAATAATTCTTTGACTAAATATATATTTGTTCTAAGTGTGAAATATAATGAAAAAAAAGGAAAAAAAAAAAAGAAAAAAAAAAGAGGGTTTCATTTAATTTGTACTAATATAAAGGGTGTTTATATTATTGTGATTATAATGTAAAGACAATGTAATT

mRNA sequence

CCATCCATCCATTCAATTTCAATTCAATTCAATCCCATCTCCATTTTGTTCCAATCCAATTCATTTCCTCTCCAATTCATCCAATCCCACCTCCACCTCCACCTCCACCTCCAAATTCCCTCAACATTCATGGCGGATTCGCCACTGAAACCGCCGCTCCAGAGGCCCCCAGGCTACAAGGACCCAAGCGCCTCCGGTAGCTCAGCCTCCATCCCGGTCTCGAAGCCGCCGGCCGCCAGAAACAAGCCCCGTCTCCCGACCTCGTACAAGCCGAAGAAGAGGAAAAGCAGCTGCTGCAGGCTCTGCTGCTGCGTGTTCTGTTTCCTAATCCTGTTCCTGATCGTGGTGGTGTCCCTCGCCGGCGCCCTGTTCTACCTGATCTTCGACCCCAAGCTTCCCCTGTTCCACCTCCTCGCCTTCCGCATCTCCTCCTTCAAGGTCGCCCCGACCCCCGACGGGTCCTACCTGGACGCCCAGGTGTCCATCCGGGTGGAGTTCAAGAACCCCAACGACAAGCTGGCGATCAAGTACGGGAAGATCGAGTACGACGTGATGGTGGGGCAGGCGGCGGAGTTCGGGCAGCGGGAGCTGCAGGGGTTCACGCAGGGGAGGCGGAGCACGACGACGGTGAAGGCGGACTCCGGGGTGAAGGGGAAGATGCTGGGGGTGGAGGACTCGACGAGGCTGGTGTCCAAGTATCAGAGTAAGGCGATGGAGGTGAAAGTAGAGGCGAGGACGGCGGTGGGCGTGGTGGCTCAAGGCTGGGCGGTGGGTCCCATCCCCGTCAAATTGGATTGCGAGTCTAAATTGAAGAATATTGAGGCCGGATCAATATACGTGGATGAGGTTGCAATTGCTCGGAAGTCAATTATATTATATTATTTATTTTTATTGGGTTGAATATTTTATTGGAACTTTTTTCTTTTTTTCCTTTTTTTAATCGAATTAATTTTTCTTAAATATTACGACTTTAGAACGTCAAATAATTCTTTGACTAAATATATATTTGTTCTAAGTGTGAAATATAATGAAAAAAAAGGAAAAAAAAAAAAGAAAAAAAAAAGAGGGTTTCATTTAATTTGTACTAATATAAAGGGTGTTTATATTATTGTGATTATAATGTAAAGACAATGTAATT

Coding sequence (CDS)

CCATCCATCCATTCAATTTCAATTCAATTCAATCCCATCTCCATTTTGTTCCAATCCAATTCATTTCCTCTCCAATTCATCCAATCCCACCTCCACCTCCACCTCCACCTCCAAATTCCCTCAACATTCATGGCGGATTCGCCACTGAAACCGCCGCTCCAGAGGCCCCCAGGCTACAAGGACCCAAGCGCCTCCGGTAGCTCAGCCTCCATCCCGGTCTCGAAGCCGCCGGCCGCCAGAAACAAGCCCCGTCTCCCGACCTCGTACAAGCCGAAGAAGAGGAAAAGCAGCTGCTGCAGGCTCTGCTGCTGCGTGTTCTGTTTCCTAATCCTGTTCCTGATCGTGGTGGTGTCCCTCGCCGGCGCCCTGTTCTACCTGATCTTCGACCCCAAGCTTCCCCTGTTCCACCTCCTCGCCTTCCGCATCTCCTCCTTCAAGGTCGCCCCGACCCCCGACGGGTCCTACCTGGACGCCCAGGTGTCCATCCGGGTGGAGTTCAAGAACCCCAACGACAAGCTGGCGATCAAGTACGGGAAGATCGAGTACGACGTGATGGTGGGGCAGGCGGCGGAGTTCGGGCAGCGGGAGCTGCAGGGGTTCACGCAGGGGAGGCGGAGCACGACGACGGTGAAGGCGGACTCCGGGGTGAAGGGGAAGATGCTGGGGGTGGAGGACTCGACGAGGCTGGTGTCCAAGTATCAGAGTAAGGCGATGGAGGTGAAAGTAGAGGCGAGGACGGCGGTGGGCGTGGTGGCTCAAGGCTGGGCGGTGGGTCCCATCCCCGTCAAATTGGATTGCGAGTCTAAATTGAAGAATATTGAGGCCGGATCAATATACGTGGATGAGGTTGCAATTGCTCGGAAGTCAATTATATTATATTATTTATTTTTATTGGGTTGA

Protein sequence

PSIHSISIQFNPISILFQSNSFPLQFIQSHLHLHLHLQIPSTFMADSPLKPPLQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRLCCCVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVSIRVEFKNPNDKLAIKYGKIEYDVMVGQAAEFGQRELQGFTQGRRSTTTVKADSGVKGKMLGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCESKLKNIEAGSIYVDEVAIARKSIILYYLFLLG

Homology

[Close]

BLAST of Cp4.1LG17g10100 vs. TrEMBL
Match: A0A0A0KCD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042460 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 5.8e-93
Identity = 180/247 (72.87%), Postives = 205/247 (83.00%), Query Frame = 1


Query: 44  MADSPLKPPLQRPPGYKD---PSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCR 103
           MAD PLKPPLQ+PPGYKD    + S SSAS     PP  R KPR P+SYKPKKRK +CCR
Sbjct: 1   MADLPLKPPLQKPPGYKDHNTTATSSSSASTATHLPPPLRPKPRPPSSYKPKKRKRNCCR 60

Query: 104 LCCCVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQV 163
            CCC+FCFLILFLIVV +LA ALFYL++DPKLP+FHLLAFRISSFKV+ TPDGS+LD+QV
Sbjct: 61  TCCCIFCFLILFLIVVAALALALFYLLYDPKLPVFHLLAFRISSFKVSTTPDGSFLDSQV 120

Query: 164 SIRVEFKNPNDKLAIKYGKIEYDVMVGQAAEFGQRELQGFTQGRRSTTTVKADSGVKGKM 223
           SIRVEFKNPN+KL+IKYGKIEYDV VGQA EFG+REL GFTQGRRSTTTVKA++ VK KM
Sbjct: 121 SIRVEFKNPNEKLSIKYGKIEYDVTVGQATEFGRRELAGFTQGRRSTTTVKAEAAVKNKM 180

Query: 224 LGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCESKLKNIEAGSIYV 283
           L VED  RL+SK+QSKA+EVKVEA T VGVV QGW +GPI VKLDCESKLKNI+ G +  
Sbjct: 181 LAVEDGGRLLSKFQSKALEVKVEAETEVGVVVQGWGLGPITVKLDCESKLKNIDGGDMPT 240

Query: 284 DEVAIAR 288
             + + R
Sbjct: 241 CNINLLR 247

[Close]

BLAST of Cp4.1LG17g10100 vs. TrEMBL
Match: A0A061DTS6_THECC (Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative OS=Theobroma cacao GN=TCM_005206 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-48
Identity = 111/239 (46.44%), Postives = 153/239 (64.02%), Query Frame = 1


Query: 44  MADSPLKPPLQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRLCC 103
           M + PLKP LQ+PPGYKDPSA    A  P  +PP    KP LP S+ PKKR+  CCR+CC
Sbjct: 1   MPEPPLKPVLQKPPGYKDPSAP---AVKPGFRPPP--RKPVLPPSFHPKKRRGGCCRVCC 60

Query: 104 CVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVSIR 163
           C FC   L LI+++ + GA+FYL FDPKLP FH+ + RIS F V   PDG+YLDAQ + R
Sbjct: 61  CCFCIFFLILILLLLICGAVFYLWFDPKLPGFHVQSVRISRFNVTNKPDGTYLDAQTTTR 120

Query: 164 VEFKNPNDKLAIKYGKIEYDVMVGQA---AEFGQRELQGFTQGRRSTTTVKADSGVKGKM 223
           +E KNPN K+   YG  E DV VG+     E G   + GFT G+++TT++K ++ V  K+
Sbjct: 121 LEVKNPNAKMTYYYGNTEVDVSVGEGGDETELGTTTVHGFTMGKQNTTSLKVETKVINKL 180

Query: 224 LGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCES-KLKNIEAGSI 279
           +     TRL ++Y+SK++ V VEART +G+   G  +G + V + C+   LK ++ G +
Sbjct: 181 VDDGVGTRLQARYRSKSLRVSVEARTKIGLGVAGLKIGMVGVTVKCDGIALKRLDGGDM 234

[Close]

BLAST of Cp4.1LG17g10100 vs. TrEMBL
Match: W9SAG5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003064 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.8e-47
Identity = 112/258 (43.41%), Postives = 166/258 (64.34%), Query Frame = 1


Query: 44  MADSPLKPP-LQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRLC 103
           MA+ PLKPP LQ+PPGY+DP+A G     PV++PP  + KP LP S+ P+KR+ + CR C
Sbjct: 1   MAEQPLKPPPLQKPPGYRDPAAPGK----PVARPP--QRKPVLPASFHPRKRRRNWCRTC 60

Query: 104 CCVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVSI 163
           CC     +L L + V++AG +FYL F+PKLP+FHL + RI  F V   PDG+YLDA    
Sbjct: 61  CCFVFVFLLLLTLAVAIAGGIFYLWFEPKLPVFHLQSLRIPQFNVTVKPDGTYLDAGTVT 120

Query: 164 RVEFKNPNDKLAIKYGKIEYDVMVG--QAAEFGQRELQGFTQGRRSTTTVKADSGVKGKM 223
           R+E KNPN KL + YG    +V VG  + AE G+++L+GFTQG+ +TT++K ++ VK ++
Sbjct: 121 RIEVKNPNGKLELYYGGTHVEVSVGEDEDAELGRKDLEGFTQGKENTTSLKVETTVKNQL 180

Query: 224 LGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCES-KLKNIEAGSIY 283
           +      RL S Y+SK + VK+EA+T+VG + QG  +G + V + C    LK +++G + 
Sbjct: 181 VDDGLGKRLKSGYKSKDLVVKIEAKTSVGYIVQGVKIGTVEVGVLCGGVSLKKLDSGDMP 240

Query: 284 VDEVAIARKSIILYYLFL 298
              + + +  I   + FL
Sbjct: 241 KCSIDLLKWVIFNSFSFL 252

[Close]

BLAST of Cp4.1LG17g10100 vs. TrEMBL
Match: M5XIM8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018680mg PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.4e-43
Identity = 101/239 (42.26%), Postives = 150/239 (62.76%), Query Frame = 1


Query: 47  SPLKPPLQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPT-SYKPKKRKSSCCRLCCCV 106
           SP+KP LQ+PPGY+ P+        PV  PP  R     PT   K KKR  SCC++CCCV
Sbjct: 5   SPVKPVLQKPPGYRTPNYPAQ----PVPGPPPPRKPVYPPTLRQKQKKRGGSCCKICCCV 64

Query: 107 FCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVSIRVE 166
           FC  +L ++++V+LAG +FYL+FDP+LP F+L++F+I  F      DG++LD Q    VE
Sbjct: 65  FCAFLLIVVILVALAGGIFYLLFDPRLPAFYLISFQIPKFDAVSKSDGTHLDVQAVTSVE 124

Query: 167 FKNPNDKLAIKYGK-IEYDVMVGQAAE----FGQRELQGFTQGRRSTTTVKADSGVKGKM 226
            KNPN KL I Y +  E  + +G   +     G +E++GFTQ  R+TT VK +SGV+ K+
Sbjct: 125 VKNPNPKLDIYYSEGFEMSLSIGDENDGGLGIGTKEVKGFTQRHRNTTYVKVESGVRNKV 184

Query: 227 LGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCES-KLKNIEAGSI 279
           +      +L+ +++SK ++V +E +T VG V QGW VG + + + C   +LKN++AG +
Sbjct: 185 VEQPVGKKLLGQFKSKEIKVALEGKTRVGYVIQGWRVGTMQINVLCGGVRLKNVDAGDM 239

[Close]

BLAST of Cp4.1LG17g10100 vs. TrEMBL
Match: A0A0B0NJM7_GOSAR (D-alanine--poly (Phosphoribitol) ligase subunit 1 OS=Gossypium arboreum GN=F383_18367 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.2e-41
Identity = 97/231 (41.99%), Postives = 141/231 (61.04%), Query Frame = 1


Query: 44  MADSPLKPPLQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRLCC 103
           M++ P+KP LQ+PPGYKDPS+          +PP    KP LP S+ PKKRK+S  R CC
Sbjct: 1   MSEPPVKPVLQKPPGYKDPSSPAGQRRF---RPPP--RKPVLPPSFHPKKRKTSYGRACC 60

Query: 104 CVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVSIR 163
           C FC   L  ++++ + GA+FYL FDPKLP FH+ +FRIS F V   PDG+YLDA+ + R
Sbjct: 61  CCFCIFFLIFLLLILICGAVFYLWFDPKLPGFHIQSFRISRFNVTKRPDGTYLDARTTTR 120

Query: 164 VEFKNPNDKLAIKYGKIEYDVMVGQA---AEFGQRELQGFTQGRRSTTTVKADSGVKGKM 223
           +E KNPN K+   YG  E +V +G+     E G   +  FT   ++T +++ ++    K+
Sbjct: 121 LEVKNPNRKMIYYYGDTEVEVSLGEGGYETELGTTTVPAFTMLEKNTRSLRVETKASNKL 180

Query: 224 LGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCESKLK 272
           +  E   +L ++Y+SK++ V VEART VGV   G  +G + V + C+   K
Sbjct: 181 VVDEVGNKLRARYRSKSLPVNVEARTKVGVGVAGLKIGMVGVTVKCDGMSK 226

[Close]

BLAST of Cp4.1LG17g10100 vs. TAIR10
Match: AT2G46300.1 (AT2G46300.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-42
Identity = 93/226 (41.15%), Postives = 134/226 (59.29%), Query Frame = 1


Query: 44  MADSPLKPPLQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRLCC 103
           MAD  + P LQ+PPGY+DP+ S      P  +    R    +PTSY+PKK++ SCCR CC
Sbjct: 1   MADYQMNPVLQKPPGYRDPNMSSPPPPPPPIQQQPMRKAVPMPTSYRPKKKRRSCCRFCC 60

Query: 104 CVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVSIR 163
           C  C  ++  I ++ +  A+FYL FDPKLP F L +FR+  FK+A  PDG+ L A    R
Sbjct: 61  CCICITLVLFIFLLLVGTAVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVAR 120

Query: 164 VEFKNPNDKLAIKYGKIEYDVMVGQAAE---FGQRELQGFTQGRRSTTTVKADSGVKGKM 223
           VE KNPN KL   YG    D+ VG   +    G+  + GF QG +++T+VK ++ VK ++
Sbjct: 121 VEMKNPNSKLVFYYGNTAVDLSVGSGNDETGMGETTMNGFRQGPKNSTSVKVETTVKNQL 180

Query: 224 LGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDC 267
           +    + RL +K+QSK + + V A+T VG+   G  +G + V L C
Sbjct: 181 VERGLAKRLAAKFQSKDLVINVVAKTKVGLGVGGIKIGMLAVNLRC 226

[Close]

BLAST of Cp4.1LG17g10100 vs. TAIR10
Match: AT4G01110.1 (AT4G01110.1 unknown protein)

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-23
Identity = 76/232 (32.76%), Postives = 125/232 (53.88%), Query Frame = 1


Query: 49  LKPPLQRPPGYKD-------PSASGSSASIPVSKPPAARNKPRLPTSYKP-KKRKSSCCR 108
           LKP LQ+PPGY++       P  S SS+S  + +PP    K  +P ++ P KKR+ S CR
Sbjct: 7   LKPVLQKPPGYRELHSQPQTPLGSSSSSSSMLRRPP----KHAIPAAFYPTKKRQWSRCR 66

Query: 109 LCCCVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDG---SYLD 168
           + CC  C  +  +I+++ L  ++F+L + P+LP+  L +FR+S+F  +    G   S L 
Sbjct: 67  VFCCCVCITVAIVILLLILTVSVFFLYYSPRLPVVRLSSFRVSNFNFSGGKAGDGLSQLT 126

Query: 169 AQVSIRVEFKNPNDKLAIKYGKIEYDVMVGQ---AAEFGQRELQGFTQGRRSTTTVKADS 228
           A+ + R++F+NPN KL   YG ++  V VG+       G  +++GF +   + T V    
Sbjct: 127 AEATARLDFRNPNGKLRYYYGNVDVAVSVGEDDFETSLGSTKVKGFVEKPGNRTVVIVPI 186

Query: 229 GVKGKMLGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDC 267
            VK + +      RL +  +SK + VKV A+T VG+      +  + V + C
Sbjct: 187 KVKKQQVDDPTVKRLRADMKSKKLVVKVMAKTKVGLGVGRRKIVTVGVTISC 234

[Close]

BLAST of Cp4.1LG17g10100 vs. TAIR10
Match: AT1G01453.2 (AT1G01453.2 unknown protein)

HSP 1 Score: 103.2 bits (256), Expect = 2.8e-22
Identity = 71/228 (31.14%), Postives = 122/228 (53.51%), Query Frame = 1


Query: 45  ADSPLKPPLQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRLCCC 104
           A+ PL+P LQ+PPG++D     S+     +  P  R +P  P     KKR+ S CR+ CC
Sbjct: 16  AEKPLQPALQKPPGFRDQQNQPSAPPSGTATLPRRRPRPIHPAD---KKRRCSFCRVFCC 75

Query: 105 VFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVA--PTPDG-SYLDAQVS 164
             C L   +++++ +A A+F+L + PKLP+  L +F+IS+F  +   + DG S+L A  +
Sbjct: 76  CVCILFAVILLLILIAVAVFFLWYSPKLPVVRLASFKISNFNFSDGKSDDGWSFLSADTT 135

Query: 165 IRVEFKNPNDKLAIKYGKIEYDVMVGQ---AAEFGQRELQGFTQGRRSTTTVKADSGVKG 224
             ++F+NPN KL   YG  +  V++G+          +++GF +   + T V   + V+ 
Sbjct: 136 SVLDFRNPNGKLTFYYGDTDVAVILGEKDFETNLESTKVKGFIEKPGNRTAVIVPTTVRK 195

Query: 225 KMLGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDC 267
           + +    + RL  + +SK + V V A+T VG+      +  + V L C
Sbjct: 196 RQVDDPTAKRLQVELKSKKLLVTVTAKTKVGLAVGSRKIVTVGVSLRC 240

[Close]

BLAST of Cp4.1LG17g10100 vs. TAIR10
Match: AT1G65690.1 (AT1G65690.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-10
Identity = 49/156 (31.41%), Postives = 71/156 (45.51%), Query Frame = 1


Query: 55  RPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRLCCCVFCFLILFLI 114
           RP     P  S  S     SK P  +   R      PKKR+S CCR  C  FCFL+L L+
Sbjct: 19  RPTAPLVPRGSSRSEHGDPSKVPLNQRPQRFVPLAPPKKRRSCCCRCFCYTFCFLLL-LV 78

Query: 115 VVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVSIRVEFKNPNDKLA 174
           V V  +  + YL+F PKLP + +   +++ F +      S L    ++ +  KNPN+K+ 
Sbjct: 79  VAVGASIGILYLVFKPKLPDYSIDRLQLTRFAL---NQDSSLTTAFNVTITAKNPNEKIG 138

Query: 175 IKYGKIEYDVMVGQAAEFGQRELQGFTQGRRSTTTV 211
           I Y       +     +     L  F QG  +TT +
Sbjct: 139 IYYEDGSKITVWYMEHQLSNGSLPKFYQGHENTTVI 170

[Close]

BLAST of Cp4.1LG17g10100 vs. TAIR10
Match: AT1G17620.1 (AT1G17620.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-08
Identity = 57/227 (25.11%), Postives = 102/227 (44.93%), Query Frame = 1


Query: 57  PGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPK------KRKSS----CCRLCCCVF 116
           P  K P+  G  A  P + P    NK +L  + +P       +R++S    CC  CCC  
Sbjct: 8   PASKPPAIVGGGA--PTTNPTFPANKAQLYNANRPAYRPPAGRRRTSHTRGCCCRCCCWT 67

Query: 117 CFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVSIRVEF 176
            F+I+ L+++V+ A A+ YLI+ P+ P F +   +IS+           L   +S+ V  
Sbjct: 68  IFVIILLLLIVAAASAVVYLIYRPQRPSFTVSELKISTLNFT---SAVRLTTAISLSVIA 127

Query: 177 KNPNDKLAIKYGKIE---YDVMVG--QAAEFGQRELQGFTQGRRSTTTVKADSGVKGKML 236
           +NPN  +   Y   +   Y    G       G+  +  F+ G+++TTT+++  G     L
Sbjct: 128 RNPNKNVGFIYDVTDITLYKASTGGDDDVVIGKGTIAAFSHGKKNTTTLRSTIGSPPDEL 187

Query: 237 GVEDSTRLVSKYQS-KAMEVKVEARTAVGVVAQGWAVGPIPVKLDCE 268
               + +L    ++ KA+ +K+   + V V           +++ CE
Sbjct: 188 DEISAGKLKGDLKAKKAVAIKIVLNSKVKVKMGALKTPKSGIRVTCE 229

[Close]

BLAST of Cp4.1LG17g10100 vs. NCBI nr
Match: gi|659089922|ref|XP_008445748.1| (PREDICTED: uncharacterized protein LOC103488682 [Cucumis melo])

HSP 1 Score: 357.1 bits (915), Expect = 3.1e-95
Identity = 183/247 (74.09%), Postives = 209/247 (84.62%), Query Frame = 1


Query: 44  MADSPLKPPLQRPPGYKD---PSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCR 103
           MAD P+KPPLQ+PPGYKD    + S SSAS     PP  R+KPRLP+SYKPKKRK +CCR
Sbjct: 1   MADLPMKPPLQKPPGYKDHHTAATSSSSASTVTHLPPPPRSKPRLPSSYKPKKRKRNCCR 60

Query: 104 LCCCVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQV 163
            CCC+FCFLILFLIVV +LA ALFYLI+DPKLP+FHLLAFRIS+FKV+ TPDGS+LDAQV
Sbjct: 61  TCCCIFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISTFKVSATPDGSFLDAQV 120

Query: 164 SIRVEFKNPNDKLAIKYGKIEYDVMVGQAAEFGQRELQGFTQGRRSTTTVKADSGVKGKM 223
           SIRVEFKNPNDKL+IKYGKIEYDVMVGQA EFG+REL GFTQ RRSTTTVKA++ VK KM
Sbjct: 121 SIRVEFKNPNDKLSIKYGKIEYDVMVGQATEFGRRELAGFTQDRRSTTTVKAEAAVKNKM 180

Query: 224 LGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCESKLKNIEAGSIYV 283
           L VED  RL+SK+QSKA+EVKVEA TAVGVV QGW +GPI VKLDCE+KLKNIE G + +
Sbjct: 181 LAVEDGARLLSKFQSKALEVKVEAETAVGVVIQGWGLGPITVKLDCETKLKNIEGGDMPI 240

Query: 284 DEVAIAR 288
             + + R
Sbjct: 241 CNINLLR 247

[Close]

BLAST of Cp4.1LG17g10100 vs. NCBI nr
Match: gi|449446257|ref|XP_004140888.1| (PREDICTED: uncharacterized protein LOC101205096 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 8.3e-93
Identity = 180/247 (72.87%), Postives = 205/247 (83.00%), Query Frame = 1


Query: 44  MADSPLKPPLQRPPGYKD---PSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCR 103
           MAD PLKPPLQ+PPGYKD    + S SSAS     PP  R KPR P+SYKPKKRK +CCR
Sbjct: 1   MADLPLKPPLQKPPGYKDHNTTATSSSSASTATHLPPPLRPKPRPPSSYKPKKRKRNCCR 60

Query: 104 LCCCVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQV 163
            CCC+FCFLILFLIVV +LA ALFYL++DPKLP+FHLLAFRISSFKV+ TPDGS+LD+QV
Sbjct: 61  TCCCIFCFLILFLIVVAALALALFYLLYDPKLPVFHLLAFRISSFKVSTTPDGSFLDSQV 120

Query: 164 SIRVEFKNPNDKLAIKYGKIEYDVMVGQAAEFGQRELQGFTQGRRSTTTVKADSGVKGKM 223
           SIRVEFKNPN+KL+IKYGKIEYDV VGQA EFG+REL GFTQGRRSTTTVKA++ VK KM
Sbjct: 121 SIRVEFKNPNEKLSIKYGKIEYDVTVGQATEFGRRELAGFTQGRRSTTTVKAEAAVKNKM 180

Query: 224 LGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCESKLKNIEAGSIYV 283
           L VED  RL+SK+QSKA+EVKVEA T VGVV QGW +GPI VKLDCESKLKNI+ G +  
Sbjct: 181 LAVEDGGRLLSKFQSKALEVKVEAETEVGVVVQGWGLGPITVKLDCESKLKNIDGGDMPT 240

Query: 284 DEVAIAR 288
             + + R
Sbjct: 241 CNINLLR 247

[Close]

BLAST of Cp4.1LG17g10100 vs. NCBI nr
Match: gi|590721513|ref|XP_007051635.1| (Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao])

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48
Identity = 111/239 (46.44%), Postives = 153/239 (64.02%), Query Frame = 1


Query: 44  MADSPLKPPLQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRLCC 103
           M + PLKP LQ+PPGYKDPSA    A  P  +PP    KP LP S+ PKKR+  CCR+CC
Sbjct: 1   MPEPPLKPVLQKPPGYKDPSAP---AVKPGFRPPP--RKPVLPPSFHPKKRRGGCCRVCC 60

Query: 104 CVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVSIR 163
           C FC   L LI+++ + GA+FYL FDPKLP FH+ + RIS F V   PDG+YLDAQ + R
Sbjct: 61  CCFCIFFLILILLLLICGAVFYLWFDPKLPGFHVQSVRISRFNVTNKPDGTYLDAQTTTR 120

Query: 164 VEFKNPNDKLAIKYGKIEYDVMVGQA---AEFGQRELQGFTQGRRSTTTVKADSGVKGKM 223
           +E KNPN K+   YG  E DV VG+     E G   + GFT G+++TT++K ++ V  K+
Sbjct: 121 LEVKNPNAKMTYYYGNTEVDVSVGEGGDETELGTTTVHGFTMGKQNTTSLKVETKVINKL 180

Query: 224 LGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCES-KLKNIEAGSI 279
           +     TRL ++Y+SK++ V VEART +G+   G  +G + V + C+   LK ++ G +
Sbjct: 181 VDDGVGTRLQARYRSKSLRVSVEARTKIGLGVAGLKIGMVGVTVKCDGIALKRLDGGDM 234

[Close]

BLAST of Cp4.1LG17g10100 vs. NCBI nr
Match: gi|1009142616|ref|XP_015888818.1| (PREDICTED: protein YLS9 [Ziziphus jujuba])

HSP 1 Score: 199.5 bits (506), Expect = 8.2e-48
Identity = 102/237 (43.04%), Postives = 154/237 (64.98%), Query Frame = 1


Query: 44  MADSPLKPPLQRPPGYKDPSASGSSASIPVSKPPAARNKPRLPTSYKPKKRKSSCCRLCC 103
           M + P+KP LQ+PPGY+DPSA G     PV++PP    KP LP S++ K+++ SCCR CC
Sbjct: 1   MREPPMKPALQKPPGYRDPSAPGK----PVARPPP--RKPTLPPSFRTKRKRRSCCRTCC 60

Query: 104 CVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVSIR 163
           C  CF I+ L ++V + G + YL F PK+P FHL ++RI  FKV    D +YLDA+  IR
Sbjct: 61  CFLCFFIVILTIIVLVVGGVSYLWFSPKIPTFHLQSYRIPEFKVTVKTDATYLDARTVIR 120

Query: 164 VEFKNPNDKLAIKYGKIEYDVMVGQA---AEFGQRELQGFTQGRRSTTTVKADSGVKGKM 223
           +E KNPN KL + YG+ + + +VG+     E GQ E+ GFTQG ++ T++K +S  K ++
Sbjct: 121 IEVKNPNTKLKVYYGRTQINAIVGKGESETELGQSEVAGFTQGIKNVTSLKIESSTKNRL 180

Query: 224 LGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDCES-KLKNIEAG 277
           +  +D  +L S Y++K +EV+V+ART++G V   W +G + V + C     K+++ G
Sbjct: 181 IDDKDGRKLKSGYKTKNLEVRVKARTSLGYVVGRWRIGALRVTVSCGGMTFKSLDGG 231

[Close]

BLAST of Cp4.1LG17g10100 vs. NCBI nr
Match: gi|702333839|ref|XP_010055051.1| (PREDICTED: protein YLS9-like [Eucalyptus grandis])

HSP 1 Score: 197.2 bits (500), Expect = 4.1e-47
Identity = 107/239 (44.77%), Postives = 151/239 (63.18%), Query Frame = 1


Query: 44  MADSPLKPPLQRPPGYKDPSASGSSASIPVSKPPAAR-NKPRLPTSYKPKKRKSSCCRLC 103
           MA+ P KP LQ+PPGY+DPS       + V +PP     KP +P S  P+K++ SCCR C
Sbjct: 1   MAEPPQKPMLQKPPGYRDPS-------VVVQQPPTQPYRKPVMPPSMYPRKKRRSCCRSC 60

Query: 104 CCVFCFLILFLIVVVSLAGALFYLIFDPKLPLFHLLAFRISSFKVAPTPDGSYLDAQVSI 163
           CC  C LI  ++ V+ LAGAL YL F PK+P+FHL +FRI  F V   PDG+YL AQ  +
Sbjct: 61  CCCLCVLIFLILCVLILAGALSYLWFGPKIPVFHLQSFRIPRFNVTAKPDGTYLKAQTVL 120

Query: 164 RVEFKNPNDKLAIKYGKIEYDVMVGQAA--EFGQRELQGFTQGRRSTTTVKADSGVKGKM 223
           RVE KNPN KL + YG  + D+ +G+    E G   L GFTQG+++ T++K  + V+ ++
Sbjct: 121 RVEVKNPNQKLGLYYGGTDVDISLGRGGGIELGSDSLPGFTQGKKNVTSLKVTTEVRDEL 180

Query: 224 LGVEDSTRLVSKYQSKAMEVKVEARTAVGVVAQGWAVGPIPVKLDC-ESKLKNIEAGSI 279
           +       L S Y+SK++ VKV+ RT+VG + QGW VG + V ++C E  +K +E G +
Sbjct: 181 VEDGAGAELRSGYRSKSLVVKVKVRTSVGAIIQGWKVGRVRVNVECGEVAMKEVEGGEM 232

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g10100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g10100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCD8_CUCSA	5.8e-93	72.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042460 PE=4 SV=1	[more]
A0A061DTS6_THECC	1.1e-48	46.44	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative OS...	[more]
W9SAG5_9ROSA	4.8e-47	43.41	Uncharacterized protein OS=Morus notabilis GN=L484_003064 PE=4 SV=1	[more]
M5XIM8_PRUPE	9.4e-43	42.26	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018680mg PE=4 SV=1	[more]
A0A0B0NJM7_GOSAR	5.2e-41	41.99	D-alanine--poly (Phosphoribitol) ligase subunit 1 OS=Gossypium arboreum GN=F383_...	[more]

BLAST of Cp4.1LG17g10100 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46300.1	1.1e-42	41.15	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT4G01110.1	3.3e-23	32.76	unknown protein	[more]
AT1G01453.2	2.8e-22	31.14	unknown protein	[more]
AT1G65690.1	4.2e-10	31.41	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G17620.1	3.0e-08	25.11	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of Cp4.1LG17g10100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089922\|ref\|XP_008445748.1\|	3.1e-95	74.09	PREDICTED: uncharacterized protein LOC103488682 [Cucumis melo]	[more]
gi\|449446257\|ref\|XP_004140888.1\|	8.3e-93	72.87	PREDICTED: uncharacterized protein LOC101205096 [Cucumis sativus]	[more]
gi\|590721513\|ref\|XP_007051635.1\|	1.6e-48	46.44	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [T...	[more]
gi\|1009142616\|ref\|XP_015888818.1\|	8.2e-48	43.04	PREDICTED: protein YLS9 [Ziziphus jujuba]	[more]
gi\|702333839\|ref\|XP_010055051.1\|	4.1e-47	44.77	PREDICTED: protein YLS9-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g10100.1	Cp4.1LG17g10100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 164..266 score: 1.
None	No IPR available	PANTHER	PTHR31234	FAMILY NOT NAMED	coord: 38..268 score: 1.9
None	No IPR available	PANTHER	PTHR31234:SF12	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 38..268 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG17g10100	CmaCh08G001040	Cucurbita maxima (Rimu)	cmacpeB914
Cp4.1LG17g10100	CmoCh08G001100	Cucurbita moschata (Rifu)	cmocpeB851
Cp4.1LG17g10100	ClCG08G003840	Watermelon (Charleston Gray)	cpewcgB310
Cp4.1LG17g10100	Lsi08G003050	Bottle gourd (USVL1VR-Ls)	cpelsiB278
Cp4.1LG17g10100	MELO3C006056.2	Melon (DHL92) v3.6.1	cpemedB373
Cp4.1LG17g10100	CsaV3_3G008390	Cucumber (Chinese Long) v3	cpecucB0391
Cp4.1LG17g10100	CsGy3G008380	Cucumber (Gy14) v2	cgybcpeB359
Cp4.1LG17g10100	Carg04932	Silver-seed gourd	carcpeB0125

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG17g10100	Wax gourd	cpewgoB0409
Cp4.1LG17g10100	Wax gourd	cpewgoB0412
Cp4.1LG17g10100	Cucurbita pepo (Zucchini)	cpecpeB166
Cp4.1LG17g10100	Cucurbita pepo (Zucchini)	cpecpeB172
Cp4.1LG17g10100	Cucurbita maxima (Rimu)	cmacpeB390
Cp4.1LG17g10100	Cucurbita maxima (Rimu)	cmacpeB384
Cp4.1LG17g10100	Cucurbita moschata (Rifu)	cmocpeB349
Cp4.1LG17g10100	Cucurbita moschata (Rifu)	cmocpeB354
Cp4.1LG17g10100	Wild cucumber (PI 183967)	cpecpiB332
Cp4.1LG17g10100	Cucumber (Chinese Long) v2	cpecuB331
Cp4.1LG17g10100	Bottle gourd (USVL1VR-Ls)	cpelsiB251
Cp4.1LG17g10100	Watermelon (Charleston Gray)	cpewcgB301
Cp4.1LG17g10100	Watermelon (Charleston Gray)	cpewcgB311
Cp4.1LG17g10100	Watermelon (97103) v1	cpewmB337
Cp4.1LG17g10100	Melon (DHL92) v3.5.1	cpemeB287
Cp4.1LG17g10100	Silver-seed gourd	carcpeB0312