Cp4.1LG17g06570 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g06570
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG17 : 6477849 .. 6480382 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGCACTACAATTTCAGACTTCGCCCAGATGCTATTACGCTTGTCAATGTTCTTCCTGCATGTGCATCAACATTTGCGACTCAACATGGCAGGCAGGTACATGGATTTGCGGTTCGGAGTGGATTGGTGGATGATGTGTTTGTAGGCAATGCTCTTGTGGATATGTATGCTAAATGCTCGAAGATGAATGAGGCAAACAAGGTGTTTGAGCAGATGAAGGAGAAGGATGTGGTTTCTTGGAATGCTTTGGTAACTGGCTATTCTCAGATTGGTAGCTTTGATGATGCTCTCTCCTTGTTTAAGAGGATGCAAGAGGAAGATATTGAGTTAAATGTGGTAACATGGAGTGCTGTGATTGCTGGCTATTCTCAAAGGGGGCATGGTTGTGAAGCCCTTGATGTATTCAGGCAAATGCAACACTGTGGGTTGGAGCCAAATGTTGTTACTCTTGTGTCTCTTCTTTCAGGTTGTGCTTCTGTGGGAGCATTGCTTCATGGAAAGCAAACACATGCATATGCCATAAAAAATATTCTCAACTTGGATTGGAGTGATCCTGGAGATGACATGATGGTTTTTAATGGCCTAATTGATATGTATGCTAAATGCAAAAGCTCGAGAGTTGCTCGCAATATTTTTGACTCGATAATAGGAAAGGACAAGAACGTGGTGACTTGGACTGTCATGATTGGTGGGTATGCTCAGCATGGCGAAGCCAATGATGCAGTAGAACTTTTCTCTCAGATGTTCAAGCAGGAGACCTCTTTAAAGCCTAATGCCTTCACTCTATCTTGTGCCTTGATGGCTTGTGCACGTTTGGGTGCATTAAGGCTTGGAAAACAAATCCATGCCTATGCTTTGCGTCATGAAAATGAGTCTGAGGTTTTACATGTAGCTAATTGCCTTATAGATATGTATTCCAAATCAGGGGACATTGATGCTGCTCAGATCGTATTCGACAACATGAAGGTACGAAATGCTGTTTCTTGGACATCCTTGATGACAGGTTACGGTATCCATGGTCGTGGTGAAGAAGCTCTACGTGTTTTTAATCAAATGCGGCAAGTTGGTCTTTCAGTTGATGGGGTAACCTTTCTTGTCGTTCTTTATGCTTGTAGCCACTCTGGAATGGTGGATCAAGGCATGAACTACTTCCATGGTATGGTCAAGTACTTTGGGGTTGCACCTGGAGCCGAACATTATGCATGTATGGTTGATCTCTTGGGCCGTGCAGGTCGTCTCAATGAAGCAATGGAACTCATTAAAAGCATGCCAATGGAACCGACCCCAGTTGTATGGGTGGCTCTACTAAGTGCCAGCAGAACCCATGCTAATGTCGAGCTTGGGGAATATGCAGCAAGCAAATTGATAGAATCTGGGGCAGAGAATGATGGTTCATACACATTACTTTCGAACTTGTATGCGAATGCGCGACGTTGGAAAGATGTAGCTAGAATCCGAAGATTGATGAAACATACTGGGATCAAAAAGAGGCCGGGATGTAGTTGGGTACAAGGCAAGAAAAGCACTACAACCTTCTTTGTGGGTGATAAAAGTCATCCACAATCAGACCAAATATACAACATTCTCTCCGATTTGATTCAACGCATCAAGGACATGGGGTACGTTCCTCAAACAAGCTTTGCTCTTCATGACGTTGACGACGAGGAGAAAGGCGATCTCTTGTTTGAGCATAGCGAGAAGTTGGCTGTTGCATATGGGATCTTAACATCAGCTCCAGGACAACCCATTCGAATAAACAAGAACTTGCGCATATGCGGTGATTGCCACAGTGCCTTAACCTACATTTCCATGATTATTGAACACGAGATCATATTGAGAGATTCCAGTAGGTTTCATCATTTCAAGAAAGGCTCCTGCTCTTGTAGAGGCTATTGGTGATGGACAAATTGAATCAAGACTATGAGGTAACTGTTTTATGTCATTTGTATGAGGTAACTGCAAAAATATTTTGAATTTATATCTAGTGATTATTAGGAAATACATGTAGATCTTTGAATTCACCTCGAACTGTTATTAAGAGTCTATCACATTGTGGCAAATGCAAGCAGATATTTAGAGGCTATCACCGATATATTACTACCTTCCATAATATCTCGAGTGACTACTATACCTTCTATACATTAGCAATCTTTACAAAGTTTCAATTCGGATCCGAAAGCCTCAAATCCTGTTCGAAAAATTGTCCATTTCTCTGAAGTCTCAGTCTGTTCTCTGAAACCATCCCAACTGCAGATGAAAGTATGTTTTAGAGGAGATACTTAGAAGGAAACCACATTTCTATTAGGTTCATCATATGTGAAGAAACAATCATACCTTCCAAGCATACATTCCAAAAAAGGCTATGGTGTCAGCTGACCAGACGACTGCAAAAGACTTCAAGAAAAATGGAATTATAACATTGAGTAAGGGGACGAGGAGGAATAGATAGTTGAGAGCTTCTTTCTCGTTCTTTGAGCAGTCTCGTGCTCGAAGCGAAGGTATTGCTGTCATCCAAAATTTTCACGTAG

mRNA sequence

ATGGCTAAGCACTACAATTTCAGACTTCGCCCAGATGCTATTACGCTTGTCAATGTTCTTCCTGCATGTGCATCAACATTTGCGACTCAACATGGCAGGCAGGTACATGGATTTGCGGTTCGGAGTGGATTGGTGGATGATGTGTTTGTAGGCAATGCTCTTGTGGATATGTATGCTAAATGCTCGAAGATGAATGAGGCAAACAAGGTGTTTGAGCAGATGAAGGAGAAGGATGTGGTTTCTTGGAATGCTTTGGTAACTGGCTATTCTCAGATTGGTAGCTTTGATGATGCTCTCTCCTTGTTTAAGAGGATGCAAGAGGAAGATATTGAGTTAAATGTGGTAACATGGAGTGCTGTGATTGCTGGCTATTCTCAAAGGGGGCATGGTTGTGAAGCCCTTGATGTATTCAGGCAAATGCAACACTGTGGGTTGGAGCCAAATGTTGTTACTCTTGTGTCTCTTCTTTCAGGCAAGAAAAGCACTACAACCTTCTTTGTGGGTGATAAAAGTCATCCACAATCAGACCAAATATACAACATTCTCTCCGATTTGATTCAACGCATCAAGGACATGGGGTACGTTCCTCAAACAAGCTTTGCTCTTCATGACGTTGACGACGAGGAGAAAGGCGATCTCTTGTTTGAGCATAGCGAGAAGTTGGCTGTTGCATATGGGATCTTAACATCAGCTCCAGGACAACCCATTCGAATAAACAAGAACTTGCGCATATGCGGTGATTGCCACAGTGCCTTAACCTACATTTCCATGATTATTGAACACGAGATCATATTGAGAGATTCCAGTAGTCTCGTGCTCGAAGCGAAGGTATTGCTGTCATCCAAAATTTTCACGTAG

Coding sequence (CDS)

ATGGCTAAGCACTACAATTTCAGACTTCGCCCAGATGCTATTACGCTTGTCAATGTTCTTCCTGCATGTGCATCAACATTTGCGACTCAACATGGCAGGCAGGTACATGGATTTGCGGTTCGGAGTGGATTGGTGGATGATGTGTTTGTAGGCAATGCTCTTGTGGATATGTATGCTAAATGCTCGAAGATGAATGAGGCAAACAAGGTGTTTGAGCAGATGAAGGAGAAGGATGTGGTTTCTTGGAATGCTTTGGTAACTGGCTATTCTCAGATTGGTAGCTTTGATGATGCTCTCTCCTTGTTTAAGAGGATGCAAGAGGAAGATATTGAGTTAAATGTGGTAACATGGAGTGCTGTGATTGCTGGCTATTCTCAAAGGGGGCATGGTTGTGAAGCCCTTGATGTATTCAGGCAAATGCAACACTGTGGGTTGGAGCCAAATGTTGTTACTCTTGTGTCTCTTCTTTCAGGCAAGAAAAGCACTACAACCTTCTTTGTGGGTGATAAAAGTCATCCACAATCAGACCAAATATACAACATTCTCTCCGATTTGATTCAACGCATCAAGGACATGGGGTACGTTCCTCAAACAAGCTTTGCTCTTCATGACGTTGACGACGAGGAGAAAGGCGATCTCTTGTTTGAGCATAGCGAGAAGTTGGCTGTTGCATATGGGATCTTAACATCAGCTCCAGGACAACCCATTCGAATAAACAAGAACTTGCGCATATGCGGTGATTGCCACAGTGCCTTAACCTACATTTCCATGATTATTGAACACGAGATCATATTGAGAGATTCCAGTAGTCTCGTGCTCGAAGCGAAGGTATTGCTGTCATCCAAAATTTTCACGTAG

Protein sequence

MAKHYNFRLRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAKCSKMNEANKVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAVIAGYSQRGHGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSHPQSDQIYNILSDLIQRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTSAPGQPIRINKNLRICGDCHSALTYISMIIEHEIILRDSSSLVLEAKVLLSSKIFT

Homology

[Close]

BLAST of Cp4.1LG17g06570 vs. Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.9e-50
Identity = 99/166 (59.64%), Postives = 121/166 (72.89%), Query Frame = 1


Query: 7   FRLRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAKCSKMNE 66
           F  RPD ITLVNVLP CAS      G+Q+H FAV S ++ ++FVGN LVDMYAKC  M+E
Sbjct: 223 FGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDE 282

Query: 67  ANKVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAVIAGYSQ 126
           AN VF  M  KDVVSWNA+V GYSQIG F+DA+ LF++MQEE I+++VVTWSA I+GY+Q
Sbjct: 283 ANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQ 342

Query: 127 RGHGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSH 173
           RG G EAL V RQM   G++PN VTL+S+LSG  S      G + H
Sbjct: 343 RGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388

[Close]

BLAST of Cp4.1LG17g06570 vs. Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.6e-35
Identity = 89/271 (32.84%), Postives = 139/271 (51.29%), Query Frame = 1


Query: 8   RLRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNA-LVDMYAKCSKMNE 67
           +++ D +T + V  AC      + G +     VR   +      N+ +VD+Y++  ++ +
Sbjct: 591 KVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 650

Query: 68  ANKVFEQMKEK-DVVSWNALVTGY-----SQIGSFDDALSLFKRMQEEDIELNVVTWSAV 127
           A KV E M        W  ++        +++G    A      M+ ED    V+  +  
Sbjct: 651 AMKVIENMPNPAGSTIWRTILAACRVHKKTELGRL--AAEKIIAMKPEDSAAYVLLSNM- 710

Query: 128 IAGYSQRGHGCEALDVFRQMQHCGL--EPNVVTLVSLLSGKKSTTTFFVGDKSHPQSDQI 187
              Y++ G   E   V + M    +  EP      S +  K  T +F  GD+SHP  DQI
Sbjct: 711 ---YAESGDWQERAKVRKLMNERNVKKEPGY----SWIEVKNKTYSFLAGDRSHPLKDQI 770

Query: 188 YNILSDLIQRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTSAPGQPIRI 247
           Y  L DL  R+KD+GY P TS+ L D+DDE K  +L +HSE+LA+A+G++ +  G P+ I
Sbjct: 771 YMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLI 830

Query: 248 NKNLRICGDCHSALTYISMIIEHEIILRDSS 270
            KNLR+CGDCH  +  I+ I E EI++RDS+
Sbjct: 831 IKNLRVCGDCHLVIKLIAKIEEREIVVRDSN 851

[Close]

BLAST of Cp4.1LG17g06570 vs. Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-34
Identity = 92/270 (34.07%), Postives = 142/270 (52.59%), Query Frame = 1


Query: 9   LRPDAITLVNVLPACASTFATQHGRQVHG-----FAVRSGLVDDVFVGNALVDMYAKCSK 68
           +RPD ITL+ VL AC+       GR+        + +  G   D +    L+D+  +  K
Sbjct: 514 IRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGA--DHYA--RLIDLLCRSGK 573

Query: 69  MNEANKVFEQMKEKDVVS-WNALVTGYSQIGSFDDAL----SLFKRMQEEDIELNVVTWS 128
            ++A  V E +  K     W AL++G    G+ +  +     LF  + E D      T+ 
Sbjct: 574 FSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHD-----GTYM 633

Query: 129 AVIAGYSQRGHGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSHPQSDQI 188
            +   ++  G   E   V + M+  G++  V    S +  +    TF V D SHP+++ +
Sbjct: 634 LLSNMHAATGQWEEVARVRKLMRDRGVKKEVAC--SWIEMETQVHTFLVDDTSHPEAEAV 693

Query: 189 YNILSDLIQRIKDMGYVPQTSFALHDVD-DEEKGDLLFEHSEKLAVAYGILTSAPGQPIR 248
           Y  L DL + ++ +GYVP TSF LHDV+ D  K D+L  HSEK+AVA+G++   PG  IR
Sbjct: 694 YIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIR 753

Query: 249 INKNLRICGDCHSALTYISMIIEHEIILRD 268
           I KNLR CGDCH+   ++S +++ +IILRD
Sbjct: 754 IFKNLRTCGDCHNFFRFLSWVVQRDIILRD 772

[Close]

BLAST of Cp4.1LG17g06570 vs. Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.4e-34
Identity = 81/261 (31.03%), Postives = 137/261 (52.49%), Query Frame = 1


Query: 9   LRPDAITLVNVLPACASTFATQHGRQVHGFAVRS-GLVDDVFVGNALVDMYAKCSKMNEA 68
           + P+++T V +L AC        G+      +   G+   +     +VD+Y +   + EA
Sbjct: 298 INPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEA 357

Query: 69  NKVFEQMK-EKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAVIAGYSQ 128
                 M  E DV+ W +L++G   +G         KR+ E D  +N   +  +   Y++
Sbjct: 358 ESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELD-PMNSGAYVLLSNVYAK 417

Query: 129 RGHGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSHPQSDQIYNILSDLI 188
            G   E   +  +M+  G+  N V   S +  +     F VGD+S  +S++IY +L +++
Sbjct: 418 TGRWMEVKCIRHEMEVKGI--NKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIM 477

Query: 189 QRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTSAPGQPIRINKNLRICG 248
           QR+++ GYV  T   L D+++++K   L  HSEKLA+A+ ++ + PG P+RI KNLRICG
Sbjct: 478 QRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICG 537

Query: 249 DCHSALTYISMIIEHEIILRD 268
           DCH  +  IS +   EI++RD
Sbjct: 538 DCHLVMKMISKLFSREIVVRD 555

[Close]

BLAST of Cp4.1LG17g06570 vs. Swiss-Prot
Match: PPR52_ARATH (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-33
Identity = 62/149 (41.61%), Postives = 101/149 (67.79%), Query Frame = 1


Query: 11  PDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAKCSKMNEANKV 70
           P+A+T+++ + AC+       G +VH  AV+ G +DDV VGN+LVDMY+KC K+ +A KV
Sbjct: 350 PNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKV 409

Query: 71  FEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAVIAGYSQRGHG 130
           F+ +K KDV +WN+++TGY Q G    A  LF RMQ+ ++  N++TW+ +I+GY + G  
Sbjct: 410 FDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDE 469

Query: 131 CEALDVFRQMQHCG-LEPNVVTLVSLLSG 159
            EA+D+F++M+  G ++ N  T   +++G
Sbjct: 470 GEAMDLFQRMEKDGKVQRNTATWNLIIAG 498

[Close]

BLAST of Cp4.1LG17g06570 vs. TrEMBL
Match: A0A0A0K225_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G063940 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.1e-72
Identity = 134/172 (77.91%), Postives = 150/172 (87.21%), Query Frame = 1


Query: 1   MAKHYNFRLRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAK 60
           M  HY+ +LRPDAITLVN+LPACAS FA QHG+QVHGF+VR+GLVDDVFVGNALV MYAK
Sbjct: 235 MGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAK 294

Query: 61  CSKMNEANKVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAV 120
           CSKMNEANKVFE +K+KDVVSWNA+VTGYSQIGSFD ALSLFK MQEEDI+L+V+TWSAV
Sbjct: 295 CSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAV 354

Query: 121 IAGYSQRGHGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSH 173
           IAGY+Q+GHG EALDVFRQMQ  GLEPNVVTL SLLSG  S      G ++H
Sbjct: 355 IAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTH 406

[Close]

BLAST of Cp4.1LG17g06570 vs. TrEMBL
Match: A5C8U0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018821 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.3e-62
Identity = 121/164 (73.78%), Postives = 138/164 (84.15%), Query Frame = 1


Query: 9   LRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAKCSKMNEAN 68
           +RPDA++LVNVLPACAS  A   G+QVHG+A+RSGL +DVFVGNA+VDMYAKC  M EAN
Sbjct: 246 IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEAN 305

Query: 69  KVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAVIAGYSQRG 128
           KVFE+MK KDVVSWNA+VTGYSQIG FDDAL LF++++EE IELNVVTWSAVIAGY+QRG
Sbjct: 306 KVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRG 365

Query: 129 HGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSH 173
            G EALDVFRQM  CG EPNVVTLVSLLSG  S  T   G ++H
Sbjct: 366 LGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETH 409

[Close]

BLAST of Cp4.1LG17g06570 vs. TrEMBL
Match: F6I606_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g03020 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 5.1e-62
Identity = 120/164 (73.17%), Postives = 138/164 (84.15%), Query Frame = 1


Query: 9   LRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAKCSKMNEAN 68
           +RPDA++LVNVLPACAS  A   G+QVHG+A+RSGL +DVFVGNA+VDMYAKC  M EAN
Sbjct: 227 IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEAN 286

Query: 69  KVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAVIAGYSQRG 128
           KVFE+MK KDVVSWNA+VTGYSQIG FDDAL LF++++EE IELNVVTWSAVIAGY+QRG
Sbjct: 287 KVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRG 346

Query: 129 HGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSH 173
            G EALDVFRQM+ CG EPNVVTLVSLLSG     T   G ++H
Sbjct: 347 LGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETH 390

[Close]

BLAST of Cp4.1LG17g06570 vs. TrEMBL
Match: M5VWM2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002349mg PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 4.3e-61
Identity = 115/167 (68.86%), Postives = 136/167 (81.44%), Query Frame = 1


Query: 6   NFRLRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAKCSKMN 65
           +F +RPDA +LVNVLPACAS  A   G+Q+H +A+R GL +DVFVGNA+VDMYAKC  M+
Sbjct: 55  DFSVRPDAFSLVNVLPACASAGAPMWGKQIHSYAIRRGLFEDVFVGNAVVDMYAKCEMMD 114

Query: 66  EANKVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAVIAGYS 125
           EANKVFE+M+EKDVVSWNA+VTGYSQIG  DDA+  F++M+EE IELNVVTWSAVIAGY+
Sbjct: 115 EANKVFERMEEKDVVSWNAMVTGYSQIGRLDDAIGFFEKMREEKIELNVVTWSAVIAGYA 174

Query: 126 QRGHGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSH 173
           QRGHG  ALDVFRQMQ CG EPN VTL+SLLSG  S      G ++H
Sbjct: 175 QRGHGYGALDVFRQMQACGSEPNAVTLISLLSGCASAGALIHGKETH 221

[Close]

BLAST of Cp4.1LG17g06570 vs. TrEMBL
Match: A0A0R0GGP5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G224400 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.8e-60
Identity = 116/164 (70.73%), Postives = 134/164 (81.71%), Query Frame = 1


Query: 9   LRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAKCSKMNEAN 68
           + PD I+LVN+LPACAS  A+  GRQVHGF++RSGLVDDVFVGNA+VDMYAKC KM EAN
Sbjct: 261 MSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEAN 320

Query: 69  KVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAVIAGYSQRG 128
           KVF++MK KDVVSWNA+VTGYSQ G  + ALSLF+RM EE+IEL+VVTW+AVI GY+QRG
Sbjct: 321 KVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRG 380

Query: 129 HGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSH 173
            GCEALDVFRQM  CG  PNVVTLVSLLS   S      G ++H
Sbjct: 381 QGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETH 424

[Close]

BLAST of Cp4.1LG17g06570 vs. TAIR10
Match: AT5G16860.1 (AT5G16860.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 200.3 bits (508), Expect = 1.6e-51
Identity = 99/166 (59.64%), Postives = 121/166 (72.89%), Query Frame = 1


Query: 7   FRLRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAKCSKMNE 66
           F  RPD ITLVNVLP CAS      G+Q+H FAV S ++ ++FVGN LVDMYAKC  M+E
Sbjct: 223 FGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDE 282

Query: 67  ANKVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAVIAGYSQ 126
           AN VF  M  KDVVSWNA+V GYSQIG F+DA+ LF++MQEE I+++VVTWSA I+GY+Q
Sbjct: 283 ANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQ 342

Query: 127 RGHGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSH 173
           RG G EAL V RQM   G++PN VTL+S+LSG  S      G + H
Sbjct: 343 RGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388

[Close]

BLAST of Cp4.1LG17g06570 vs. TAIR10
Match: AT2G27610.1 (AT2G27610.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-36
Identity = 89/271 (32.84%), Postives = 139/271 (51.29%), Query Frame = 1


Query: 8   RLRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNA-LVDMYAKCSKMNE 67
           +++ D +T + V  AC      + G +     VR   +      N+ +VD+Y++  ++ +
Sbjct: 591 KVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 650

Query: 68  ANKVFEQMKEK-DVVSWNALVTGY-----SQIGSFDDALSLFKRMQEEDIELNVVTWSAV 127
           A KV E M        W  ++        +++G    A      M+ ED    V+  +  
Sbjct: 651 AMKVIENMPNPAGSTIWRTILAACRVHKKTELGRL--AAEKIIAMKPEDSAAYVLLSNM- 710

Query: 128 IAGYSQRGHGCEALDVFRQMQHCGL--EPNVVTLVSLLSGKKSTTTFFVGDKSHPQSDQI 187
              Y++ G   E   V + M    +  EP      S +  K  T +F  GD+SHP  DQI
Sbjct: 711 ---YAESGDWQERAKVRKLMNERNVKKEPGY----SWIEVKNKTYSFLAGDRSHPLKDQI 770

Query: 188 YNILSDLIQRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTSAPGQPIRI 247
           Y  L DL  R+KD+GY P TS+ L D+DDE K  +L +HSE+LA+A+G++ +  G P+ I
Sbjct: 771 YMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLI 830

Query: 248 NKNLRICGDCHSALTYISMIIEHEIILRDSS 270
            KNLR+CGDCH  +  I+ I E EI++RDS+
Sbjct: 831 IKNLRVCGDCHLVIKLIAKIEEREIVVRDSN 851

[Close]

BLAST of Cp4.1LG17g06570 vs. TAIR10
Match: AT1G25360.1 (AT1G25360.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 147.9 bits (372), Expect = 9.5e-36
Identity = 92/270 (34.07%), Postives = 142/270 (52.59%), Query Frame = 1


Query: 9   LRPDAITLVNVLPACASTFATQHGRQVHG-----FAVRSGLVDDVFVGNALVDMYAKCSK 68
           +RPD ITL+ VL AC+       GR+        + +  G   D +    L+D+  +  K
Sbjct: 514 IRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGA--DHYA--RLIDLLCRSGK 573

Query: 69  MNEANKVFEQMKEKDVVS-WNALVTGYSQIGSFDDAL----SLFKRMQEEDIELNVVTWS 128
            ++A  V E +  K     W AL++G    G+ +  +     LF  + E D      T+ 
Sbjct: 574 FSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHD-----GTYM 633

Query: 129 AVIAGYSQRGHGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSHPQSDQI 188
            +   ++  G   E   V + M+  G++  V    S +  +    TF V D SHP+++ +
Sbjct: 634 LLSNMHAATGQWEEVARVRKLMRDRGVKKEVAC--SWIEMETQVHTFLVDDTSHPEAEAV 693

Query: 189 YNILSDLIQRIKDMGYVPQTSFALHDVD-DEEKGDLLFEHSEKLAVAYGILTSAPGQPIR 248
           Y  L DL + ++ +GYVP TSF LHDV+ D  K D+L  HSEK+AVA+G++   PG  IR
Sbjct: 694 YIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIR 753

Query: 249 INKNLRICGDCHSALTYISMIIEHEIILRD 268
           I KNLR CGDCH+   ++S +++ +IILRD
Sbjct: 754 IFKNLRTCGDCHNFFRFLSWVVQRDIILRD 772

[Close]

BLAST of Cp4.1LG17g06570 vs. TAIR10
Match: AT3G62890.1 (AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-35
Identity = 81/261 (31.03%), Postives = 137/261 (52.49%), Query Frame = 1


Query: 9   LRPDAITLVNVLPACASTFATQHGRQVHGFAVRS-GLVDDVFVGNALVDMYAKCSKMNEA 68
           + P+++T V +L AC        G+      +   G+   +     +VD+Y +   + EA
Sbjct: 298 INPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEA 357

Query: 69  NKVFEQMK-EKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAVIAGYSQ 128
                 M  E DV+ W +L++G   +G         KR+ E D  +N   +  +   Y++
Sbjct: 358 ESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELD-PMNSGAYVLLSNVYAK 417

Query: 129 RGHGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSHPQSDQIYNILSDLI 188
            G   E   +  +M+  G+  N V   S +  +     F VGD+S  +S++IY +L +++
Sbjct: 418 TGRWMEVKCIRHEMEVKGI--NKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIM 477

Query: 189 QRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTSAPGQPIRINKNLRICG 248
           QR+++ GYV  T   L D+++++K   L  HSEKLA+A+ ++ + PG P+RI KNLRICG
Sbjct: 478 QRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICG 537

Query: 249 DCHSALTYISMIIEHEIILRD 268
           DCH  +  IS +   EI++RD
Sbjct: 538 DCHLVMKMISKLFSREIVVRD 555

[Close]

BLAST of Cp4.1LG17g06570 vs. TAIR10
Match: AT1G19720.1 (AT1G19720.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-34
Identity = 62/149 (41.61%), Postives = 101/149 (67.79%), Query Frame = 1


Query: 11  PDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAKCSKMNEANKV 70
           P+A+T+++ + AC+       G +VH  AV+ G +DDV VGN+LVDMY+KC K+ +A KV
Sbjct: 350 PNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKV 409

Query: 71  FEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAVIAGYSQRGHG 130
           F+ +K KDV +WN+++TGY Q G    A  LF RMQ+ ++  N++TW+ +I+GY + G  
Sbjct: 410 FDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDE 469

Query: 131 CEALDVFRQMQHCG-LEPNVVTLVSLLSG 159
            EA+D+F++M+  G ++ N  T   +++G
Sbjct: 470 GEAMDLFQRMEKDGKVQRNTATWNLIIAG 498

[Close]

BLAST of Cp4.1LG17g06570 vs. NCBI nr
Match: gi|297745258|emb|CBI40338.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 307.0 bits (785), Expect = 3.5e-80
Identity = 165/269 (61.34%), Postives = 195/269 (72.49%), Query Frame = 1


Query: 9   LRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAKCSKMNEAN 68
           +RPDA++LVNVLPACAS  A   G+QVHG+A+RSGL +DVFVGNA+VDMYAKC  M EAN
Sbjct: 227 IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEAN 286

Query: 69  KVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIEL--NVVTWSAVIAGYSQ 128
           KVFE+MK KDVVSWNA+VTGYSQIG FDDAL LF++++EE IEL  NVVT  ++++G + 
Sbjct: 287 KVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNPNVVTLVSLLSGCAL 346

Query: 129 RG---HGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSHPQSD-QIYNIL 188
            G   HG E         HC     ++ L                D++ P  D  + N L
Sbjct: 347 AGTLLHGKET--------HCHAIKWILNL----------------DENDPGDDLMVINAL 406

Query: 189 --SDLIQRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTSAPGQPIRINK 248
              DL+QRIK +GYVP   FALHDVDDEEKGDLL EHSEKLA+AYGILT+APG PIRI K
Sbjct: 407 IDIDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITK 466

Query: 249 NLRICGDCHSALTYISMIIEHEIILRDSS 270
           NLR CGDCHSA TYIS+IIEHEII+RDSS
Sbjct: 467 NLRACGDCHSAFTYISIIIEHEIIVRDSS 471

[Close]

BLAST of Cp4.1LG17g06570 vs. NCBI nr
Match: gi|659110350|ref|XP_008455181.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis melo])

HSP 1 Score: 283.1 bits (723), Expect = 5.4e-73
Identity = 136/172 (79.07%), Postives = 152/172 (88.37%), Query Frame = 1


Query: 1   MAKHYNFRLRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAK 60
           M  HY+ +LRPDAITLVN+LPACAS FA QHG+QVHGF+VRSGLVDDVFVGNALV MYAK
Sbjct: 235 MGNHYSLKLRPDAITLVNILPACASIFAIQHGKQVHGFSVRSGLVDDVFVGNALVSMYAK 294

Query: 61  CSKMNEANKVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAV 120
           CSKMNEANKVFE++K+KDVVSWNA+VTGYSQIGSFD ALSLFK MQEEDI+L+V+TWSAV
Sbjct: 295 CSKMNEANKVFERIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAV 354

Query: 121 IAGYSQRGHGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSH 173
           IAGY+Q+GHG EALDVFRQMQ  GLEPNVVTLVSLLSG  S      G ++H
Sbjct: 355 IAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLVSLLSGCASVGALLYGKQTH 406

[Close]

BLAST of Cp4.1LG17g06570 vs. NCBI nr
Match: gi|778724386|ref|XP_011658790.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 5.9e-72
Identity = 134/172 (77.91%), Postives = 150/172 (87.21%), Query Frame = 1


Query: 1   MAKHYNFRLRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAK 60
           M  HY+ +LRPDAITLVN+LPACAS FA QHG+QVHGF+VR+GLVDDVFVGNALV MYAK
Sbjct: 235 MGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAK 294

Query: 61  CSKMNEANKVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAV 120
           CSKMNEANKVFE +K+KDVVSWNA+VTGYSQIGSFD ALSLFK MQEEDI+L+V+TWSAV
Sbjct: 295 CSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAV 354

Query: 121 IAGYSQRGHGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSH 173
           IAGY+Q+GHG EALDVFRQMQ  GLEPNVVTL SLLSG  S      G ++H
Sbjct: 355 IAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTH 406

[Close]

BLAST of Cp4.1LG17g06570 vs. NCBI nr
Match: gi|700188497|gb|KGN43730.1| (hypothetical protein Csa_7G063940 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 5.9e-72
Identity = 134/172 (77.91%), Postives = 150/172 (87.21%), Query Frame = 1


Query: 1   MAKHYNFRLRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAK 60
           M  HY+ +LRPDAITLVN+LPACAS FA QHG+QVHGF+VR+GLVDDVFVGNALV MYAK
Sbjct: 235 MGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAK 294

Query: 61  CSKMNEANKVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAV 120
           CSKMNEANKVFE +K+KDVVSWNA+VTGYSQIGSFD ALSLFK MQEEDI+L+V+TWSAV
Sbjct: 295 CSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAV 354

Query: 121 IAGYSQRGHGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSH 173
           IAGY+Q+GHG EALDVFRQMQ  GLEPNVVTL SLLSG  S      G ++H
Sbjct: 355 IAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTH 406

[Close]

BLAST of Cp4.1LG17g06570 vs. NCBI nr
Match: gi|147865382|emb|CAN79811.1| (hypothetical protein VITISV_018821 [Vitis vinifera])

HSP 1 Score: 247.3 bits (630), Expect = 3.3e-62
Identity = 121/164 (73.78%), Postives = 138/164 (84.15%), Query Frame = 1


Query: 9   LRPDAITLVNVLPACASTFATQHGRQVHGFAVRSGLVDDVFVGNALVDMYAKCSKMNEAN 68
           +RPDA++LVNVLPACAS  A   G+QVHG+A+RSGL +DVFVGNA+VDMYAKC  M EAN
Sbjct: 246 IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEAN 305

Query: 69  KVFEQMKEKDVVSWNALVTGYSQIGSFDDALSLFKRMQEEDIELNVVTWSAVIAGYSQRG 128
           KVFE+MK KDVVSWNA+VTGYSQIG FDDAL LF++++EE IELNVVTWSAVIAGY+QRG
Sbjct: 306 KVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRG 365

Query: 129 HGCEALDVFRQMQHCGLEPNVVTLVSLLSGKKSTTTFFVGDKSH 173
            G EALDVFRQM  CG EPNVVTLVSLLSG  S  T   G ++H
Sbjct: 366 LGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETH 409

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g06570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP390_ARATH	2.9e-50	59.64	Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN...	[more]
PP172_ARATH	2.6e-35	32.84	Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN...	[more]
PPR57_ARATH	1.7e-34	34.07	Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN...	[more]
PP295_ARATH	6.4e-34	31.03	Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN...	[more]
PPR52_ARATH	1.9e-33	41.61	Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cp4.1LG17g06570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K225_CUCSA	4.1e-72	77.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G063940 PE=4 SV=1	[more]
A5C8U0_VITVI	2.3e-62	73.78	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018821 PE=4 SV=1	[more]
F6I606_VITVI	5.1e-62	73.17	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g03020 PE=4 SV=...	[more]
M5VWM2_PRUPE	4.3e-61	68.86	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002349mg PE=4 SV=1	[more]
A0A0R0GGP5_SOYBN	2.8e-60	70.73	Uncharacterized protein OS=Glycine max GN=GLYMA_14G224400 PE=4 SV=1	[more]

BLAST of Cp4.1LG17g06570 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16860.1	1.6e-51	59.64	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G27610.1	1.5e-36	32.84	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G25360.1	9.5e-36	34.07	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G62890.1	3.6e-35	31.03	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G19720.1	1.0e-34	41.61	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

BLAST of Cp4.1LG17g06570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|297745258\|emb\|CBI40338.3\|	3.5e-80	61.34	unnamed protein product [Vitis vinifera]	[more]
gi\|659110350\|ref\|XP_008455181.1\|	5.4e-73	79.07	PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis melo]	[more]
gi\|778724386\|ref\|XP_011658790.1\|	5.9e-72	77.91	PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativu...	[more]
gi\|700188497\|gb\|KGN43730.1\|	5.9e-72	77.91	hypothetical protein Csa_7G063940 [Cucumis sativus]	[more]
gi\|147865382\|emb\|CAN79811.1\|	3.3e-62	73.78	hypothetical protein VITISV_018821 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g06570.1	Cp4.1LG17g06570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 52..79 score: 5.1E-5coord: 80..110 score: 3.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 113..158 score: 5.1
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 115..149 score: 4.5E-7coord: 80..114 score: 4.5E-9coord: 52..80 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 78..112 score: 12.485coord: 47..77 score: 9.427coord: 113..147 score: 11
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 52..147 score: 4.
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 6..156 score: 1.8E
None	No IPR available	PANTHER	PTHR24015:SF128	SUBFAMILY NOT NAMED	coord: 6..156 score: 1.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG17g06570	Carg22183	Silver-seed gourd	carcpeB1200

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG17g06570	Cucumber (Chinese Long) v3	cpecucB0418
Cp4.1LG17g06570	Cucumber (Chinese Long) v3	cpecucB0423
Cp4.1LG17g06570	Wax gourd	cpewgoB0407
Cp4.1LG17g06570	Wax gourd	cpewgoB0416
Cp4.1LG17g06570	Cucurbita pepo (Zucchini)	cpecpeB157
Cp4.1LG17g06570	Cucurbita pepo (Zucchini)	cpecpeB335
Cp4.1LG17g06570	Cucumber (Gy14) v1	cgycpeB0152
Cp4.1LG17g06570	Cucumber (Gy14) v1	cgycpeB0153
Cp4.1LG17g06570	Cucurbita maxima (Rimu)	cmacpeB376
Cp4.1LG17g06570	Cucurbita maxima (Rimu)	cmacpeB917
Cp4.1LG17g06570	Cucurbita moschata (Rifu)	cmocpeB339
Cp4.1LG17g06570	Cucurbita moschata (Rifu)	cmocpeB853
Cp4.1LG17g06570	Wild cucumber (PI 183967)	cpecpiB340
Cp4.1LG17g06570	Wild cucumber (PI 183967)	cpecpiB345
Cp4.1LG17g06570	Cucumber (Chinese Long) v2	cpecuB339
Cp4.1LG17g06570	Cucumber (Chinese Long) v2	cpecuB344
Cp4.1LG17g06570	Bottle gourd (USVL1VR-Ls)	cpelsiB262
Cp4.1LG17g06570	Bottle gourd (USVL1VR-Ls)	cpelsiB272
Cp4.1LG17g06570	Watermelon (Charleston Gray)	cpewcgB280
Cp4.1LG17g06570	Watermelon (Charleston Gray)	cpewcgB308
Cp4.1LG17g06570	Watermelon (97103) v1	cpewmB311
Cp4.1LG17g06570	Watermelon (97103) v1	cpewmB328
Cp4.1LG17g06570	Melon (DHL92) v3.5.1	cpemeB300
Cp4.1LG17g06570	Cucumber (Gy14) v2	cgybcpeB931
Cp4.1LG17g06570	Cucumber (Gy14) v2	cgybcpeB927
Cp4.1LG17g06570	Melon (DHL92) v3.6.1	cpemedB348
Cp4.1LG17g06570	Silver-seed gourd	carcpeB0161