Cp4.1LG17g03180 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g03180
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAP2/ERF domain-containing transcription factor, putative
LocationCp4.1LG17 : 1669544 .. 1670764 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATCAATTCCCTTTGATTGAAGAACTCAAAAACATCATTCCTAAGGATATTTCATCATCTTCTCCGTCGTCTTTTGAAGAATTCGTCTCTGGATATTACTTTCATGGCGATCCAATTCTCTGGAGCTCCATAGCTCGAGCTTCGTGCTCTGAAAATGGTGATTCTAATGGTAATGATCAATCGAAATCCCCATCTTCTTCTTCTTCTTCTTCGTCGTCTTTTCGACTGTTTTCGAGCGAAAAATCTGAGATTTCTGGTGGGAATTTGATCGAAAACTTTCGAGGAATTCGAAAGTTTGAAAGTAATCTTCACCCAGATGGAGATGGGTTTGTTCCTGTGAATTTCTTGGAGGCTTCTCCGACTCTGTTTCAATCTCGAACAGATTCAACAAATTTGACTCTGTTTCTTCAAGAATCCGCCATTGTTGATCCGTCCCCTCGAAACCCATTTCAAATTCAAGCTCAAAATGGGCTCCAATGGCTGAAGAACAATCATAATCAGAGCCAAGCAGCCGCCATTGCTGCTGTGTCGTCGAGAAATTACAGCGATTTCTGGCTGGGAGCGACGAAGACGCAGCCGATGAAACAGAGTGGGAGAAAACAGGGGAGTCACAAAACAGAGTCGACGGCGACAGCGACGGCGACGGCGACGGCGGTTGGGAAGTTGTTTAGAGGCGTCCGGCAGCGGCACTGGGGGAAATGGGTGGCGGAGATTCGACTTCCAAGAAACCGGACGAGAGTCTGGCTCGGGACATTCGATACCGCCGTCGAAGCCGCCATAGCTTATGACACCGCCGCCTATATGCTGAGAGGGGAATTTGCACATTTAAATTTCCCCGACCAAAAACACCGCCTGAAATCCAATTCTCTCAATCGAACCACGGCGGCGCTGCTGGAAGCGAAGCTGAAAACGATCAGTCAAGAGAACACCAGTAGAAAAAAGACTGCCACCTCCTCTACCATCGCCGCGACTACCACCATACCCACCATTGATTCATCTTCTTCAGAGAAGAGATCCAACTTGAGCCAGAATCCGACGAGGATTTCGCCGGAAAACATGTCGGGGAACGGCGGCAACAATGGCGGATCTGAAACAGGGGAGTTGAAGAGAAACCCAGATGAAATATTTGAAATTGAACAACATCTTCAACTCAGCACAACGCCATCTTTGGACATGGATACGATTTGGGATGCTCTGTTAGTTTCTGATTCATAA

mRNA sequence

ATGGCGGATCAATTCCCTTTGATTGAAGAACTCAAAAACATCATTCCTAAGGATATTTCATCATCTTCTCCGTCGTCTTTTGAAGAATTCGTCTCTGGATATTACTTTCATGGCGATCCAATTCTCTGGAGCTCCATAGCTCGAGCTTCGTGCTCTGAAAATGGTGATTCTAATGGTAATGATCAATCGAAATCCCCATCTTCTTCTTCTTCTTCTTCGTCGTCTTTTCGACTGTTTTCGAGCGAAAAATCTGAGATTTCTGGTGGGAATTTGATCGAAAACTTTCGAGGAATTCGAAAGTTTGAAAGTAATCTTCACCCAGATGGAGATGGGTTTGTTCCTGTGAATTTCTTGGAGGCTTCTCCGACTCTGTTTCAATCTCGAACAGATTCAACAAATTTGACTCTGTTTCTTCAAGAATCCGCCATTGTTGATCCGTCCCCTCGAAACCCATTTCAAATTCAAGCTCAAAATGGGCTCCAATGGCTGAAGAACAATCATAATCAGAGCCAAGCAGCCGCCATTGCTGCTGTGTCGTCGAGAAATTACAGCGATTTCTGGCTGGGAGCGACGAAGACGCAGCCGATGAAACAGACGAAGCTGAAAACGATCAGTCAAGAGAACACCAGTAGAAAAAAGACTGCCACCTCCTCTACCATCGCCGCGACTACCACCATACCCACCATTGATTCATCTTCTTCAGAGAAGAGATCCAACTTGAGCCAGAATCCGACGAGGATTTCGCCGGAAAACATGTCGGGGAACGGCGGCAACAATGGCGGATCTGAAACAGGGGAGTTGAAGAGAAACCCAGATGAAATATTTGAAATTGAACAACATCTTCAACTCAGCACAACGCCATCTTTGGACATGGATACGATTTGGGATGCTCTGTTAGTTTCTGATTCATAA

Coding sequence (CDS)

ATGGCGGATCAATTCCCTTTGATTGAAGAACTCAAAAACATCATTCCTAAGGATATTTCATCATCTTCTCCGTCGTCTTTTGAAGAATTCGTCTCTGGATATTACTTTCATGGCGATCCAATTCTCTGGAGCTCCATAGCTCGAGCTTCGTGCTCTGAAAATGGTGATTCTAATGGTAATGATCAATCGAAATCCCCATCTTCTTCTTCTTCTTCTTCGTCGTCTTTTCGACTGTTTTCGAGCGAAAAATCTGAGATTTCTGGTGGGAATTTGATCGAAAACTTTCGAGGAATTCGAAAGTTTGAAAGTAATCTTCACCCAGATGGAGATGGGTTTGTTCCTGTGAATTTCTTGGAGGCTTCTCCGACTCTGTTTCAATCTCGAACAGATTCAACAAATTTGACTCTGTTTCTTCAAGAATCCGCCATTGTTGATCCGTCCCCTCGAAACCCATTTCAAATTCAAGCTCAAAATGGGCTCCAATGGCTGAAGAACAATCATAATCAGAGCCAAGCAGCCGCCATTGCTGCTGTGTCGTCGAGAAATTACAGCGATTTCTGGCTGGGAGCGACGAAGACGCAGCCGATGAAACAGACGAAGCTGAAAACGATCAGTCAAGAGAACACCAGTAGAAAAAAGACTGCCACCTCCTCTACCATCGCCGCGACTACCACCATACCCACCATTGATTCATCTTCTTCAGAGAAGAGATCCAACTTGAGCCAGAATCCGACGAGGATTTCGCCGGAAAACATGTCGGGGAACGGCGGCAACAATGGCGGATCTGAAACAGGGGAGTTGAAGAGAAACCCAGATGAAATATTTGAAATTGAACAACATCTTCAACTCAGCACAACGCCATCTTTGGACATGGATACGATTTGGGATGCTCTGTTAGTTTCTGATTCATAA

Protein sequence

MADQFPLIEELKNIIPKDISSSSPSSFEEFVSGYYFHGDPILWSSIARASCSENGDSNGNDQSKSPSSSSSSSSSFRLFSSEKSEISGGNLIENFRGIRKFESNLHPDGDGFVPVNFLEASPTLFQSRTDSTNLTLFLQESAIVDPSPRNPFQIQAQNGLQWLKNNHNQSQAAAIAAVSSRNYSDFWLGATKTQPMKQTKLKTISQENTSRKKTATSSTIAATTTIPTIDSSSSEKRSNLSQNPTRISPENMSGNGGNNGGSETGELKRNPDEIFEIEQHLQLSTTPSLDMDTIWDALLVSDS
Homology
[Close]
BLAST of Cp4.1LG17g03180 vs. TrEMBL
Match: A0A0A0LKA8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138780 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.7e-58
Identity = 141/229 (61.57%), Postives = 160/229 (69.87%), Query Frame = 1 

Query: 1   MADQFPLIEELKNIIPKDISSSSPSSFEEFVSGYYFHGDPILWSSIARASCSENGDSNGN 60
           M D F  IE+ K II KD SSSS    ++FVSG YF+GDP LW SI R   S+N   NGN
Sbjct: 1   MEDHFQFIEQQKPIIQKDFSSSS---LQQFVSGSYFYGDPTLWGSILRPPRSQNCGFNGN 60

Query: 61  -DQSKSPSSSSSSSS-------SFRLFSSEKSEISGGNLIENFRGIRKFESNLHPDGDGF 120
            DQSKSPSSSSSSS+       S  LFS+EKSEISGGNLI+N  GI   ESNLHP+G  F
Sbjct: 61  IDQSKSPSSSSSSSTPNSPSSTSSSLFSTEKSEISGGNLIDNIHGI---ESNLHPNGQAF 120

Query: 121 VPVNFLEA-----------SPTLFQSRTDSTNLTLFLQESAIVDPSPRNPFQIQAQNGLQ 180
           VP+NFLE            SP LFQSR DSTNLTLFLQE  IVDPSP+NPFQI +Q GLQ
Sbjct: 121 VPLNFLETFPKQESESLSPSPPLFQSRIDSTNLTLFLQEPTIVDPSPQNPFQIHSQTGLQ 180

Query: 181 WLKNNHNQSQAAAIAAVSSRNYSDFWLGATKTQPMKQTKLKTISQENTS 211
           WLKN  NQ+++AAI A ++ NYSDFWLGATKTQPMKQ   K  +Q+  S
Sbjct: 181 WLKNTQNQNRSAAIVAGAANNYSDFWLGATKTQPMKQIGRKQGNQKTES 223

[Close]
BLAST of Cp4.1LG17g03180 vs. TrEMBL
Match: A0A061EJU1_THECC (AP2/ERF domain-containing transcription factor, putative OS=Theobroma cacao GN=TCM_020321 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.9e-16
Identity = 89/280 (31.79%), Postives = 123/280 (43.93%), Query Frame = 1 

Query: 3   DQFPLIEELKNIIPKDISSSSPSSFEEFVSGYYFHGDPILWSSIARASCSENGDSNGNDQ 62
           +QFP  E   N          PS      +G  F  DPI+W +++  +C +NG   G   
Sbjct: 5   NQFPKTETFMN-------KEWPSYIYGMATGPKFFNDPIMWGALSGTACHKNGSGIG--- 64

Query: 63  SKSPSSSSSSSSSFRLFSSEKS-----EISGGNLIENFRGIRKFE--------------S 122
           SK  SSSSSS S  RL SS  S     E  G NL++N  G  + +              S
Sbjct: 65  SKLSSSSSSSPSPDRLLSSSNSSSSAEEAPGANLLKNIPGFIRQDVVHEHQSSLFVSGFS 124

Query: 123 NLHPDGD-------GFVPVNFLEA-------------SPTLFQSRTDSTNLTLFLQESAI 182
           ++HP GD       GF+PVNFLE+             SP+   + +   NLTLFL E  +
Sbjct: 125 SVHPPGDSVSDIKDGFIPVNFLESFPEVHHAQVSEPPSPSSLSTTSKFPNLTLFLPEPTM 184

Query: 183 VDPSPR-----------------NPF-------QIQAQNGLQWLKNNHNQSQAAAIAAVS 220
           +DPS R                 +P        QIQ+Q G +WL+ N +      +    
Sbjct: 185 IDPSTRAIVSIGKKSEPTSNLSQDPTYHTPQLGQIQSQPGNEWLRINQS------LTNYP 244

[Close]
BLAST of Cp4.1LG17g03180 vs. TrEMBL
Match: B9IJH7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08250g PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-10
Identity = 86/288 (29.86%), Postives = 123/288 (42.71%), Query Frame = 1 

Query: 1   MADQFPLIEELKNIIPKDISSSSPSSFEEFVSGYYFHGDPILWSSIARASCSENGDSNGN 60
           M DQFP IE   +   K++ ++   SF    +G  + GDP +W +++ A+C      +GN
Sbjct: 1   MEDQFPKIETFMH---KELVAAY-CSFHGMATGSKYFGDPTIWGALSGATCRVE---DGN 60

Query: 61  DQSKSPSSSSSSSSSFRLFSSEKS------EISGGNLIENFRGIRK-----------FES 120
              KSPS SSS     RLFSS +S      ++SG +LI N  G  K           F S
Sbjct: 61  SGMKSPSQSSSE----RLFSSSESSSSADDQVSGTDLIGNIPGFGKQDVVKQDHESCFMS 120

Query: 121 NLHPDG-------------DGFVPVNFLEASPTLFQ-----------SRTDSTNLTLFLQ 180
            ++                +  +PVNFLE  PTL             S + S NLTLFLQ
Sbjct: 121 GMNSINALGANSISDQTIKESSIPVNFLEPFPTLKNQAQVPEPPSPSSLSKSPNLTLFLQ 180

Query: 181 ESA----------IVDPS-------------PRNPF------QIQAQNGLQWLKNNHNQS 219
           E A          ++DP              P   F      Q+  Q   +WLK N    
Sbjct: 181 EPAAASLLHPSKRVLDPPGKDQRCEPAMSLFPNTSFSMPQLGQVHCQPSNEWLKINQT-- 240

[Close]
BLAST of Cp4.1LG17g03180 vs. TrEMBL
Match: A9PL93_POPTR (RAP2-like protein OS=Populus trichocarpa GN=RAP2L3 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.2e-10
Identity = 86/288 (29.86%), Postives = 122/288 (42.36%), Query Frame = 1 

Query: 1   MADQFPLIEELKNIIPKDISSSSPSSFEEFVSGYYFHGDPILWSSIARASCSENGDSNGN 60
           M DQFP IE   +   K++ ++   SF    +G  + GDP +W +++ A+C      +GN
Sbjct: 1   MEDQFPKIETFMH---KELVAAY-CSFHGMATGSKYFGDPTIWGALSGATCRVE---DGN 60

Query: 61  DQSKSPSSSSSSSSSFRLFSSEKS------EISGGNLIENFRGIRK-----------FES 120
              KSPS SSS     RLFSS +S      ++SG +LI N  G  K           F S
Sbjct: 61  SGMKSPSQSSSE----RLFSSSESSSSADDQVSGTDLIGNIPGFGKQDVVKQDHESCFMS 120

Query: 121 NLHPDG-------------DGFVPVNFLEASPTLFQ-----------SRTDSTNLTLFLQ 180
            L+                +  +PVNFLE  PTL             S + S NLTLF Q
Sbjct: 121 GLNSINALGANSISDQTIKESSIPVNFLEPFPTLKNQAQVPEPPSPSSLSKSPNLTLFSQ 180

Query: 181 ESA----------IVDPS-------------PRNPF------QIQAQNGLQWLKNNHNQS 219
           E A          ++DP              P   F      Q+  Q   +WLK N    
Sbjct: 181 EPAAASLLHPSKRVLDPPGKDQRCEPAMSLFPNTSFSMPQLGQVHCQPSNEWLKINQT-- 240

[Close]
BLAST of Cp4.1LG17g03180 vs. TrEMBL
Match: A0A0D2RN39_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G157500 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.1e-09
Identity = 71/229 (31.00%), Postives = 104/229 (45.41%), Query Frame = 1 

Query: 40  PILWSSIARASCSENGDSNGNDQSKSPSSSSSSSSSFRLFSSEKSEIS-GGNLIENFRGI 99
           PI+W +++++                PSSSSSS S  RL SS   E S   NL++N  GI
Sbjct: 29  PIIWGALSKSP---------------PSSSSSSPSPDRLNSSSSPEESLEANLLKNIPGI 88

Query: 100 RKFE--------------SNLHPDG-------DGFVPVNFLEASPTLFQSRTDST----- 159
            + +              S++ P G       DGF+P+NFLE  P L Q++         
Sbjct: 89  LRQDILNEHHSSLFVSGFSSVPPHGGLVSEVKDGFMPLNFLETFPKLNQAQVSEPPSPST 148

Query: 160 -----NLTLFLQESAIVDPSPR------------------NPFQ------IQAQNGLQWL 211
                NL LFLQE  ++DPS R                  + FQ      +Q+Q G +WL
Sbjct: 149 TSKFPNLNLFLQEPGMLDPSRRAIGSMGKKGEPGSTLCQNSSFQMPQIGQVQSQMGDEWL 208

[Close]
BLAST of Cp4.1LG17g03180 vs. TAIR10
Match: AT4G13620.1 (AT4G13620.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 8.3e-06
Identity = 40/128 (31.25%), Postives = 60/128 (46.88%), Query Frame = 1 

Query: 103 SNLHPDGDGFVPVNFLEASPTLFQSR------TDSTNLTLFLQESAIVDPSPR------- 162
           S++HP     VP NFLE+ P   QS+      +   NLTLFL+E  +++ S         
Sbjct: 113 SSIHPSPVASVPWNFLESFP---QSQHPDHHPSKPPNLTLFLKEPKLLELSQSESNMSPY 172

Query: 163 -----NPFQIQAQNGLQWLKNNHNQSQAAAIAAVSSRNYSDFWLGATKTQPMKQTKLKTI 213
                N F    QN  +W++ N        +    S+ + ++WL  TKTQPMK +K + +
Sbjct: 173 HKYIPNSFYQSDQNRNEWVEINK------TLTNYPSKGFGNYWLSTTKTQPMK-SKTRKV 230

[Close]
BLAST of Cp4.1LG17g03180 vs. NCBI nr
Match: gi|659114816|ref|XP_008457242.1| (PREDICTED: ethylene-responsive transcription factor ERF062 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 146/235 (62.13%), Postives = 165/235 (70.21%), Query Frame = 1 

Query: 1   MADQFPLIEELKNIIPKDISSSSPSSFEEFVSGYYFHGDPILWSSIARASCSENGDSNGN 60
           M DQFP IE+ K II KD SSSS    ++FVSG YF+GDP LW SI R   SENG  NGN
Sbjct: 1   MEDQFPFIEQQKPIIQKDFSSSS---LQQFVSGSYFYGDPTLWGSILRPPRSENGGFNGN 60

Query: 61  -DQSKSPSSSSSSSSS-------------FRLFSSEKSEISGGNLIENFRGIRKFESNLH 120
            DQSKSPSSSSSSSSS               LFS+EKSEISGGNLI++  GI   ESNLH
Sbjct: 61  IDQSKSPSSSSSSSSSNSPNSPTSPSPTSSSLFSTEKSEISGGNLIDSIHGI---ESNLH 120

Query: 121 PDGDGFVPVNFLEA-----------SPTLFQSRTDSTNLTLFLQESAIVDPSPRNPFQIQ 180
           P+G+ FVP+NFLE            SP LFQS+ DSTNLTLFLQE  IVDPSP+NPFQIQ
Sbjct: 121 PNGESFVPLNFLETFPKQESESLSPSPPLFQSQIDSTNLTLFLQEPTIVDPSPQNPFQIQ 180

Query: 181 AQNGLQWLKNNHNQSQAAAIAAVSSRNYSDFWLGATKTQPMKQTKLKTISQENTS 211
           AQ GLQWLKN+ NQ+++AAI A +S NYSDFWLG TKTQPMKQ   K  +Q+  S
Sbjct: 181 AQTGLQWLKNSQNQNRSAAIIAAASGNYSDFWLGVTKTQPMKQIGRKQGNQKTES 229

[Close]
BLAST of Cp4.1LG17g03180 vs. NCBI nr
Match: gi|449442477|ref|XP_004139008.1| (PREDICTED: ethylene-responsive transcription factor ERF062 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 6.8e-58
Identity = 141/229 (61.57%), Postives = 160/229 (69.87%), Query Frame = 1 

Query: 1   MADQFPLIEELKNIIPKDISSSSPSSFEEFVSGYYFHGDPILWSSIARASCSENGDSNGN 60
           M D F  IE+ K II KD SSSS    ++FVSG YF+GDP LW SI R   S+N   NGN
Sbjct: 1   MEDHFQFIEQQKPIIQKDFSSSS---LQQFVSGSYFYGDPTLWGSILRPPRSQNCGFNGN 60

Query: 61  -DQSKSPSSSSSSSS-------SFRLFSSEKSEISGGNLIENFRGIRKFESNLHPDGDGF 120
            DQSKSPSSSSSSS+       S  LFS+EKSEISGGNLI+N  GI   ESNLHP+G  F
Sbjct: 61  IDQSKSPSSSSSSSTPNSPSSTSSSLFSTEKSEISGGNLIDNIHGI---ESNLHPNGQAF 120

Query: 121 VPVNFLEA-----------SPTLFQSRTDSTNLTLFLQESAIVDPSPRNPFQIQAQNGLQ 180
           VP+NFLE            SP LFQSR DSTNLTLFLQE  IVDPSP+NPFQI +Q GLQ
Sbjct: 121 VPLNFLETFPKQESESLSPSPPLFQSRIDSTNLTLFLQEPTIVDPSPQNPFQIHSQTGLQ 180

Query: 181 WLKNNHNQSQAAAIAAVSSRNYSDFWLGATKTQPMKQTKLKTISQENTS 211
           WLKN  NQ+++AAI A ++ NYSDFWLGATKTQPMKQ   K  +Q+  S
Sbjct: 181 WLKNTQNQNRSAAIVAGAANNYSDFWLGATKTQPMKQIGRKQGNQKTES 223

[Close]
BLAST of Cp4.1LG17g03180 vs. NCBI nr
Match: gi|590656748|ref|XP_007034359.1| (AP2/ERF domain-containing transcription factor, putative [Theobroma cacao])

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 89/280 (31.79%), Postives = 123/280 (43.93%), Query Frame = 1 

Query: 3   DQFPLIEELKNIIPKDISSSSPSSFEEFVSGYYFHGDPILWSSIARASCSENGDSNGNDQ 62
           +QFP  E   N          PS      +G  F  DPI+W +++  +C +NG   G   
Sbjct: 5   NQFPKTETFMN-------KEWPSYIYGMATGPKFFNDPIMWGALSGTACHKNGSGIG--- 64

Query: 63  SKSPSSSSSSSSSFRLFSSEKS-----EISGGNLIENFRGIRKFE--------------S 122
           SK  SSSSSS S  RL SS  S     E  G NL++N  G  + +              S
Sbjct: 65  SKLSSSSSSSPSPDRLLSSSNSSSSAEEAPGANLLKNIPGFIRQDVVHEHQSSLFVSGFS 124

Query: 123 NLHPDGD-------GFVPVNFLEA-------------SPTLFQSRTDSTNLTLFLQESAI 182
           ++HP GD       GF+PVNFLE+             SP+   + +   NLTLFL E  +
Sbjct: 125 SVHPPGDSVSDIKDGFIPVNFLESFPEVHHAQVSEPPSPSSLSTTSKFPNLTLFLPEPTM 184

Query: 183 VDPSPR-----------------NPF-------QIQAQNGLQWLKNNHNQSQAAAIAAVS 220
           +DPS R                 +P        QIQ+Q G +WL+ N +      +    
Sbjct: 185 IDPSTRAIVSIGKKSEPTSNLSQDPTYHTPQLGQIQSQPGNEWLRINQS------LTNYP 244

[Close]
BLAST of Cp4.1LG17g03180 vs. NCBI nr
Match: gi|566212138|ref|XP_002323984.2| (hypothetical protein POPTR_0017s08250g [Populus trichocarpa])

HSP 1 Score: 74.3 bits (181), Expect = 4.0e-10
Identity = 86/288 (29.86%), Postives = 123/288 (42.71%), Query Frame = 1 

Query: 1   MADQFPLIEELKNIIPKDISSSSPSSFEEFVSGYYFHGDPILWSSIARASCSENGDSNGN 60
           M DQFP IE   +   K++ ++   SF    +G  + GDP +W +++ A+C      +GN
Sbjct: 1   MEDQFPKIETFMH---KELVAAY-CSFHGMATGSKYFGDPTIWGALSGATCRVE---DGN 60

Query: 61  DQSKSPSSSSSSSSSFRLFSSEKS------EISGGNLIENFRGIRK-----------FES 120
              KSPS SSS     RLFSS +S      ++SG +LI N  G  K           F S
Sbjct: 61  SGMKSPSQSSSE----RLFSSSESSSSADDQVSGTDLIGNIPGFGKQDVVKQDHESCFMS 120

Query: 121 NLHPDG-------------DGFVPVNFLEASPTLFQ-----------SRTDSTNLTLFLQ 180
            ++                +  +PVNFLE  PTL             S + S NLTLFLQ
Sbjct: 121 GMNSINALGANSISDQTIKESSIPVNFLEPFPTLKNQAQVPEPPSPSSLSKSPNLTLFLQ 180

Query: 181 ESA----------IVDPS-------------PRNPF------QIQAQNGLQWLKNNHNQS 219
           E A          ++DP              P   F      Q+  Q   +WLK N    
Sbjct: 181 EPAAASLLHPSKRVLDPPGKDQRCEPAMSLFPNTSFSMPQLGQVHCQPSNEWLKINQT-- 240

[Close]
BLAST of Cp4.1LG17g03180 vs. NCBI nr
Match: gi|148372112|gb|ABQ62987.1| (RAP2-like protein [Populus trichocarpa])

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 86/288 (29.86%), Postives = 122/288 (42.36%), Query Frame = 1 

Query: 1   MADQFPLIEELKNIIPKDISSSSPSSFEEFVSGYYFHGDPILWSSIARASCSENGDSNGN 60
           M DQFP IE   +   K++ ++   SF    +G  + GDP +W +++ A+C      +GN
Sbjct: 1   MEDQFPKIETFMH---KELVAAY-CSFHGMATGSKYFGDPTIWGALSGATCRVE---DGN 60

Query: 61  DQSKSPSSSSSSSSSFRLFSSEKS------EISGGNLIENFRGIRK-----------FES 120
              KSPS SSS     RLFSS +S      ++SG +LI N  G  K           F S
Sbjct: 61  SGMKSPSQSSSE----RLFSSSESSSSADDQVSGTDLIGNIPGFGKQDVVKQDHESCFMS 120

Query: 121 NLHPDG-------------DGFVPVNFLEASPTLFQ-----------SRTDSTNLTLFLQ 180
            L+                +  +PVNFLE  PTL             S + S NLTLF Q
Sbjct: 121 GLNSINALGANSISDQTIKESSIPVNFLEPFPTLKNQAQVPEPPSPSSLSKSPNLTLFSQ 180

Query: 181 ESA----------IVDPS-------------PRNPF------QIQAQNGLQWLKNNHNQS 219
           E A          ++DP              P   F      Q+  Q   +WLK N    
Sbjct: 181 EPAAASLLHPSKRVLDPPGKDQRCEPAMSLFPNTSFSMPQLGQVHCQPSNEWLKINQT-- 240

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g03180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g03180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKA8_CUCSA4.7e-5861.57Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138780 PE=4 SV=1[more]
A0A061EJU1_THECC9.9e-1631.79AP2/ERF domain-containing transcription factor, putative OS=Theobroma cacao GN=T... [more]
B9IJH7_POPTR2.8e-1029.86Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08250g PE=4 SV=1[more]
A9PL93_POPTR8.2e-1029.86RAP2-like protein OS=Populus trichocarpa GN=RAP2L3 PE=4 SV=1[more]
A0A0D2RN39_GOSRA3.1e-0931.00Uncharacterized protein OS=Gossypium raimondii GN=B456_011G157500 PE=4 SV=1[more]
BLAST of Cp4.1LG17g03180 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G13620.18.3e-0631.25 Integrase-type DNA-binding superfamily protein[more]
BLAST of Cp4.1LG17g03180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114816|ref|XP_008457242.1|1.5e-6062.13PREDICTED: ethylene-responsive transcription factor ERF062 [Cucumis melo][more]
gi|449442477|ref|XP_004139008.1|6.8e-5861.57PREDICTED: ethylene-responsive transcription factor ERF062 [Cucumis sativus][more]
gi|590656748|ref|XP_007034359.1|1.4e-1531.79AP2/ERF domain-containing transcription factor, putative [Theobroma cacao][more]
gi|566212138|ref|XP_002323984.2|4.0e-1029.86hypothetical protein POPTR_0017s08250g [Populus trichocarpa][more]
gi|148372112|gb|ABQ62987.1|1.2e-0929.86RAP2-like protein [Populus trichocarpa][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g03180.1Cp4.1LG17g03180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g03180Cucsa.193930Cucumber (Gy14) v1cgycpeB0547
Cp4.1LG17g03180CmaCh08G010230Cucurbita maxima (Rimu)cmacpeB916
Cp4.1LG17g03180CmoCh08G009950Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g03180Cla002959Watermelon (97103) v1cpewmB334
Cp4.1LG17g03180Csa2G138780Cucumber (Chinese Long) v2cpecuB305
Cp4.1LG17g03180MELO3C020448Melon (DHL92) v3.5.1cpemeB310
Cp4.1LG17g03180ClCG06G007820Watermelon (Charleston Gray)cpewcgB294
Cp4.1LG17g03180CSPI02G09140Wild cucumber (PI 183967)cpecpiB304
Cp4.1LG17g03180Lsi09G011420Bottle gourd (USVL1VR-Ls)cpelsiB254
Cp4.1LG17g03180MELO3C020448.2Melon (DHL92) v3.6.1cpemedB362
Cp4.1LG17g03180CsaV3_2G011540Cucumber (Chinese Long) v3cpecucB0375
Cp4.1LG17g03180Bhi12G001298Wax gourdcpewgoB0392
Cp4.1LG17g03180CsGy2G009390Cucumber (Gy14) v2cgybcpeB201
Cp4.1LG17g03180Carg11024Silver-seed gourdcarcpeB1503
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g03180Cp4.1LG12g00930Cucurbita pepo (Zucchini)cpecpeB167
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g03180Melon (DHL92) v3.6.1cpemedB371
Cp4.1LG17g03180Silver-seed gourdcarcpeB0323
Cp4.1LG17g03180Silver-seed gourdcarcpeB1096
Cp4.1LG17g03180Silver-seed gourdcarcpeB1330
Cp4.1LG17g03180Cucumber (Chinese Long) v3cpecucB0383
Cp4.1LG17g03180Cucumber (Chinese Long) v3cpecucB0385
Cp4.1LG17g03180Cucurbita pepo (Zucchini)cpecpeB169
Cp4.1LG17g03180Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG17g03180Cucurbita pepo (Zucchini)cpecpeB340
Cp4.1LG17g03180Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG17g03180Cucumber (Gy14) v1cgycpeB0675
Cp4.1LG17g03180Cucurbita maxima (Rimu)cmacpeB388
Cp4.1LG17g03180Cucurbita maxima (Rimu)cmacpeB631
Cp4.1LG17g03180Cucurbita moschata (Rifu)cmocpeB351
Cp4.1LG17g03180Cucurbita moschata (Rifu)cmocpeB580
Cp4.1LG17g03180Cucurbita moschata (Rifu)cmocpeB777
Cp4.1LG17g03180Wild cucumber (PI 183967)cpecpiB310
Cp4.1LG17g03180Watermelon (Charleston Gray)cpewcgB293
Cp4.1LG17g03180Watermelon (Charleston Gray)cpewcgB306
Cp4.1LG17g03180Watermelon (97103) v1cpewmB331
Cp4.1LG17g03180Melon (DHL92) v3.5.1cpemeB316
Cp4.1LG17g03180Cucumber (Gy14) v2cgybcpeB352