Cp4.1LG17g03110 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG17g03110
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionProthymosin alpha-related family protein
LocationCp4.1LG17 : 1737257 .. 1737691 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCTCTGCGTCGTCGCCGGCGGCTTCCTCCTCTGCCTCTACCTCTTGGTCCCGGAATCGGAGTCTCAAGATTGGTACTCCGTCGTCGGGATCATCTTGGTATCGACTCCATGGATGTTTTGGTTTTTGGTTTATTTGTATCATTGCCTCAAACCCATCAGAGTGCAGTCCAACGCCGCCTTGAGCCACTCCTCGAGCAGCAACCGACCGCCGTCCGTTGCCAATAACGGTGGCGGAATTGTAGCCAATCTTCCTCAAGTTGAATCGCCGGATTGTGATACGCCCGGTGATGGCAAACGACGTGTGCATTTTGGTGCAGTGGTTGTTAAGGGAAATAACCCACAAGGTGGTAAGAAATCTAGCCATGATAGCGGTTCGAAAGAACTGAGATCGAACGAGAGCGGAGCAACGTCGCCAACCCCATCTTCATAG

mRNA sequence

ATGTTCCTCTGCGTCGTCGCCGGCGGCTTCCTCCTCTGCCTCTACCTCTTGGTCCCGGAATCGGAGTCTCAAGATTGGTACTCCGTCGTCGGGATCATCTTGGTATCGACTCCATGGATGTTTTGGTTTTTGGTTTATTTGTATCATTGCCTCAAACCCATCAGAGTGCAGTCCAACGCCGCCTTGAGCCACTCCTCGAGCAGCAACCGACCGCCGTCCGTTGCCAATAACGGTGGCGGAATTGTAGCCAATCTTCCTCAAGTTGAATCGCCGGATTGTGATACGCCCGGTGATGGCAAACGACGTGTGCATTTTGGTGCAGTGGTTGTTAAGGGAAATAACCCACAAGGTGGTAAGAAATCTAGCCATGATAGCGGTTCGAAAGAACTGAGATCGAACGAGAGCGGAGCAACGTCGCCAACCCCATCTTCATAG

Coding sequence (CDS)

ATGTTCCTCTGCGTCGTCGCCGGCGGCTTCCTCCTCTGCCTCTACCTCTTGGTCCCGGAATCGGAGTCTCAAGATTGGTACTCCGTCGTCGGGATCATCTTGGTATCGACTCCATGGATGTTTTGGTTTTTGGTTTATTTGTATCATTGCCTCAAACCCATCAGAGTGCAGTCCAACGCCGCCTTGAGCCACTCCTCGAGCAGCAACCGACCGCCGTCCGTTGCCAATAACGGTGGCGGAATTGTAGCCAATCTTCCTCAAGTTGAATCGCCGGATTGTGATACGCCCGGTGATGGCAAACGACGTGTGCATTTTGGTGCAGTGGTTGTTAAGGGAAATAACCCACAAGGTGGTAAGAAATCTAGCCATGATAGCGGTTCGAAAGAACTGAGATCGAACGAGAGCGGAGCAACGTCGCCAACCCCATCTTCATAG

Protein sequence

MFLCVVAGGFLLCLYLLVPESESQDWYSVVGIILVSTPWMFWFLVYLYHCLKPIRVQSNAALSHSSSSNRPPSVANNGGGIVANLPQVESPDCDTPGDGKRRVHFGAVVVKGNNPQGGKKSSHDSGSKELRSNESGATSPTPSS
BLAST of Cp4.1LG17g03110 vs. TrEMBL
Match: A0A0A0LN77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G120380 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.3e-25
Identity = 68/142 (47.89%), Postives = 91/142 (64.08%), Query Frame = 1

Query: 1   MFLCVVAGGFLLCLYLLVPESESQDWYSVVGIILVSTPWMFWFLVYLYHCLKPIRVQSNA 60
           +FLC++ GGFLLCLYL +PES++ DWY  +GI+LVSTPW+FW  VY+YHCLKP +V  N 
Sbjct: 17  IFLCIILGGFLLCLYLFLPESQTSDWYPTIGIVLVSTPWIFWLSVYIYHCLKPTKVLLNP 76

Query: 61  ALSHS--SSSNRPPSVANNGGGIVANLPQVESPDCDTPGDGKRRVHFGAVVVKGNNPQGG 120
             S+S  SSS +  +  NN      ++ + +  D +TPG GKR+VHFGAV V    P   
Sbjct: 77  FGSNSINSSSKKTEASKNNED----DVGEDDVGDDETPGGGKRKVHFGAVFVMEKQPTLD 136

Query: 121 KKSSHDSGSKELRSNESGATSP 141
           + SSH        S +S +TSP
Sbjct: 137 RNSSH--------SKQSTSTSP 146

BLAST of Cp4.1LG17g03110 vs. TrEMBL
Match: W9R5B5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023849 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-17
Identity = 59/145 (40.69%), Postives = 78/145 (53.79%), Query Frame = 1

Query: 2   FLCVVAGGFLLCLYLLVPESESQDWYSVVGIILVSTPWMFWFLVYLYHCLK----PIRVQ 61
           F C+V+GG  L LY+ +PE+ S  WY + G+ILVS PW FWF  +LY C K    P +  
Sbjct: 18  FSCIVSGGVFLGLYMFLPETLSSAWYPIAGMILVSVPWAFWFFTFLYRCFKPDHPPPQFD 77

Query: 62  SNAALSHSSSSNRPPSVANNG--GGIVANLPQVESPDCDTPGDG-KRRVHFGAVVVKGNN 121
           S+A  S   SS R PS AN         N    ESP+ ++PG G +RRV FG VVV G  
Sbjct: 78  SSARFSKGGSSTRDPSTANGSPIAATATNAMASESPNGESPGGGSERRVQFGPVVVLGGQ 137

Query: 122 PQGGKKSSHDSGSKELRSNESGATS 140
            +G   ++      E  +NE+   S
Sbjct: 138 GEGHAGAATTRDHHEQEANEASNCS 162

BLAST of Cp4.1LG17g03110 vs. TrEMBL
Match: M5X7L6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021714mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-15
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 1

Query: 2   FLCVVAGGFLLCLYLLVPESESQDWYSVVGIILVSTPWMFWFLVYLYHCLKPIRVQSNAA 61
           F C++AGG  L LY+L+PE +S  WY +VG++LV+ PW FW    +Y C KP   Q+ A 
Sbjct: 18  FFCIIAGGVFLFLYMLLPEEKSHPWYPLVGMVLVAIPWAFWLFTCVYRCCKPEGTQT-AD 77

Query: 62  LSH--SSSSNRPPSVANNGGGIVA-NLPQVESPDCDTPGDGKRRVHFGAVVVKGNNPQGG 120
             H   + S+R  ++ N  G   A N    ESP   +P DG+R+V F  VVV G+  QGG
Sbjct: 78  SDHYAKAGSSRAATIPNTSGVFTAGNASAAESP-VHSP-DGERKVQFAGVVVMGDEDQGG 135

BLAST of Cp4.1LG17g03110 vs. TrEMBL
Match: W9QN73_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016947 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 54/139 (38.85%), Postives = 74/139 (53.24%), Query Frame = 1

Query: 2   FLCVVAGGFLLCLYLLVPESESQDWYSVVGIILVSTPWMFWFLVYLYHCLKPIRVQSNAA 61
           F C+V+GG  L LY+ +PE++S  WY + G+ILVS PW FWF  +LY C KP     +  
Sbjct: 18  FSCIVSGGVFLGLYMFLPETQSSAWYPIAGMILVSVPWAFWFFTFLYRCFKP-----DHP 77

Query: 62  LSHSSSSNRPPSVANNGGGIVANLPQVESPDCDTP-GDGKRRVHFGAVVVKGNNPQGGKK 121
                 S R P  AN  G  + N    ESP+ ++P G G+RRV FG  VV G   +G   
Sbjct: 78  PPQFDGSTRDPLTAN--GSPMTNPMASESPNGESPGGGGERRVQFGPAVVLGGQGEGHAG 137

Query: 122 SSHDSGSKELRSNESGATS 140
           ++      E  +NE+   S
Sbjct: 138 AATTRDHHEQEANEASNCS 149

BLAST of Cp4.1LG17g03110 vs. TrEMBL
Match: B9SDE0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1516870 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13
Identity = 43/117 (36.75%), Postives = 61/117 (52.14%), Query Frame = 1

Query: 2   FLCVVAGGFLLCLYLLVPESESQDWYSVVGIILVSTPWMFWFLVYLYHCLKPIR------ 61
           FLC+++GG  L LY+ +PE+ +Q WY   G++LV+ PW  WFL YLY C  P        
Sbjct: 30  FLCIISGGVFLGLYIFLPENNTQLWYPTAGLVLVAIPWAVWFLTYLYRCFSPRHTPCPPC 89

Query: 62  --VQSNAALSHSSSSNRPPSVANNGGGIVANLPQVESPDCDTPGDGKRRVHFGAVVV 111
             +  +A+    +S N P + + N   + +N  Q          DG R VHFG VVV
Sbjct: 90  KSIPRSASDEMEASGNAPTNASYNESHLQSNAQQPHD-------DGGRHVHFGGVVV 139

BLAST of Cp4.1LG17g03110 vs. TAIR10
Match: AT5G17590.1 (AT5G17590.1 Putative membrane lipoprotein)

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-10
Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = 1

Query: 4   CVVAGGFLLCLYLLVPESESQDWYSVVGIILVSTPWMFWFLVYLYHC-LKPIRV---QSN 63
           C++ GG LL LYL+   S+    +   G++ V  PW+FWFL Y+Y C LKP  +   QS 
Sbjct: 20  CILIGGVLLGLYLV--RSDPNPLFLQAGMVFVGVPWLFWFLAYVYSCVLKPCVIFVSQST 79

Query: 64  AALSHSSSSNRPPSVANNGGGIVANLPQVESPDCDTPGDGKRRVHFGAVVVKGNNPQGGK 123
              S S +S  P     N            +P  ++P +G++ V FG VVV G+  +GGK
Sbjct: 80  IFNSKSVTSFDPEKGDPNKAPETVTTTSDPAPR-NSPREGEKHVQFGNVVVLGDE-EGGK 139

Query: 124 KSSHDSGS 128
           +  H+  S
Sbjct: 140 EEDHNESS 143

BLAST of Cp4.1LG17g03110 vs. NCBI nr
Match: gi|700206302|gb|KGN61421.1| (hypothetical protein Csa_2G120380 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-24
Identity = 68/142 (47.89%), Postives = 91/142 (64.08%), Query Frame = 1

Query: 1   MFLCVVAGGFLLCLYLLVPESESQDWYSVVGIILVSTPWMFWFLVYLYHCLKPIRVQSNA 60
           +FLC++ GGFLLCLYL +PES++ DWY  +GI+LVSTPW+FW  VY+YHCLKP +V  N 
Sbjct: 17  IFLCIILGGFLLCLYLFLPESQTSDWYPTIGIVLVSTPWIFWLSVYIYHCLKPTKVLLNP 76

Query: 61  ALSHS--SSSNRPPSVANNGGGIVANLPQVESPDCDTPGDGKRRVHFGAVVVKGNNPQGG 120
             S+S  SSS +  +  NN      ++ + +  D +TPG GKR+VHFGAV V    P   
Sbjct: 77  FGSNSINSSSKKTEASKNNED----DVGEDDVGDDETPGGGKRKVHFGAVFVMEKQPTLD 136

Query: 121 KKSSHDSGSKELRSNESGATSP 141
           + SSH        S +S +TSP
Sbjct: 137 RNSSH--------SKQSTSTSP 146

BLAST of Cp4.1LG17g03110 vs. NCBI nr
Match: gi|449442459|ref|XP_004138999.1| (PREDICTED: uncharacterized protein LOC101203715 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-24
Identity = 68/142 (47.89%), Postives = 91/142 (64.08%), Query Frame = 1

Query: 1   MFLCVVAGGFLLCLYLLVPESESQDWYSVVGIILVSTPWMFWFLVYLYHCLKPIRVQSNA 60
           +FLC++ GGFLLCLYL +PES++ DWY  +GI+LVSTPW+FW  VY+YHCLKP +V  N 
Sbjct: 31  IFLCIILGGFLLCLYLFLPESQTSDWYPTIGIVLVSTPWIFWLSVYIYHCLKPTKVLLNP 90

Query: 61  ALSHS--SSSNRPPSVANNGGGIVANLPQVESPDCDTPGDGKRRVHFGAVVVKGNNPQGG 120
             S+S  SSS +  +  NN      ++ + +  D +TPG GKR+VHFGAV V    P   
Sbjct: 91  FGSNSINSSSKKTEASKNNED----DVGEDDVGDDETPGGGKRKVHFGAVFVMEKQPTLD 150

Query: 121 KKSSHDSGSKELRSNESGATSP 141
           + SSH        S +S +TSP
Sbjct: 151 RNSSH--------SKQSTSTSP 160

BLAST of Cp4.1LG17g03110 vs. NCBI nr
Match: gi|703103359|ref|XP_010097708.1| (hypothetical protein L484_023849 [Morus notabilis])

HSP 1 Score: 96.3 bits (238), Expect = 4.7e-17
Identity = 59/145 (40.69%), Postives = 78/145 (53.79%), Query Frame = 1

Query: 2   FLCVVAGGFLLCLYLLVPESESQDWYSVVGIILVSTPWMFWFLVYLYHCLK----PIRVQ 61
           F C+V+GG  L LY+ +PE+ S  WY + G+ILVS PW FWF  +LY C K    P +  
Sbjct: 18  FSCIVSGGVFLGLYMFLPETLSSAWYPIAGMILVSVPWAFWFFTFLYRCFKPDHPPPQFD 77

Query: 62  SNAALSHSSSSNRPPSVANNG--GGIVANLPQVESPDCDTPGDG-KRRVHFGAVVVKGNN 121
           S+A  S   SS R PS AN         N    ESP+ ++PG G +RRV FG VVV G  
Sbjct: 78  SSARFSKGGSSTRDPSTANGSPIAATATNAMASESPNGESPGGGSERRVQFGPVVVLGGQ 137

Query: 122 PQGGKKSSHDSGSKELRSNESGATS 140
            +G   ++      E  +NE+   S
Sbjct: 138 GEGHAGAATTRDHHEQEANEASNCS 162

BLAST of Cp4.1LG17g03110 vs. NCBI nr
Match: gi|1009110357|ref|XP_015895163.1| (PREDICTED: uncharacterized protein LOC107429042 [Ziziphus jujuba])

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-16
Identity = 56/159 (35.22%), Postives = 82/159 (51.57%), Query Frame = 1

Query: 2   FLCVVAGGFLLCLYLLVPESESQDWYSVVGIILVSTPWMFWFLVYLYHCLKPIR------ 61
           FLC+++GG  L LY+ +PES+S DWY +VG++LV+ PW FWFL  +Y C KP +      
Sbjct: 21  FLCIISGGIFLGLYIFLPESQSADWYPIVGMVLVAIPWSFWFLTCIYRCFKPKQQPPHHH 80

Query: 62  --VQSNAALSHSSSSNRPPSVANNGGGIVANLPQVESPDCDT--------PGDGKRRVHF 121
             + +   LS +SSS+   +         + +P V  PD  T        PG G+RRVHF
Sbjct: 81  QFIDTANRLSKASSSSHTDTTTTTT--TPSTIPHVILPDSSTKAESLAHSPGGGERRVHF 140

Query: 122 GAVVVKGNNPQGGKKSSHDSGSKELRSNESGATSPTPSS 145
           GAV+V    P   ++   + G    R  +  A +    S
Sbjct: 141 GAVIVMEKAPDHHEEDDVEKGQPRHRGRDDEANASDSES 177

BLAST of Cp4.1LG17g03110 vs. NCBI nr
Match: gi|694397200|ref|XP_009373859.1| (PREDICTED: uncharacterized protein LOC103962815 [Pyrus x bretschneideri])

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 1

Query: 2   FLCVVAGGFLLCLYLLVPESESQDWYSVVGIILVSTPWMFWFLVYLYHCLKPIRVQSNAA 61
           F+C++AGG LL LY+L+PE +SQ W+   G++LV+ PW FW    +Y C +P        
Sbjct: 18  FICIIAGGVLLFLYMLLPEEKSQPWFPPAGMVLVAIPWAFWITTCIYRCFRPAAAAHTGD 77

Query: 62  LSH--SSSSNRPPSVANNGGGIVANLPQVESPDCDTPGDGKRRVHFGAVVVKGNNPQGG 119
             H   + S+R  ++    G + A +    +       +G RRV F AVVV GN  QGG
Sbjct: 78  SGHYAKAGSSRAATIPTTSGALTAGIASSATDSPVHSPNGDRRVQFAAVVVMGNEDQGG 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LN77_CUCSA7.3e-2547.89Uncharacterized protein OS=Cucumis sativus GN=Csa_2G120380 PE=4 SV=1[more]
W9R5B5_9ROSA3.3e-1740.69Uncharacterized protein OS=Morus notabilis GN=L484_023849 PE=4 SV=1[more]
M5X7L6_PRUPE3.1e-1542.15Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021714mg PE=4 SV=1[more]
W9QN73_9ROSA1.2e-1438.85Uncharacterized protein OS=Morus notabilis GN=L484_016947 PE=4 SV=1[more]
B9SDE0_RICCO3.7e-1336.75Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1516870 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G17590.13.5e-1035.16 Putative membrane lipoprotein[more]
Match NameE-valueIdentityDescription
gi|700206302|gb|KGN61421.1|1.0e-2447.89hypothetical protein Csa_2G120380 [Cucumis sativus][more]
gi|449442459|ref|XP_004138999.1|1.0e-2447.89PREDICTED: uncharacterized protein LOC101203715 [Cucumis sativus][more]
gi|703103359|ref|XP_010097708.1|4.7e-1740.69hypothetical protein L484_023849 [Morus notabilis][more]
gi|1009110357|ref|XP_015895163.1|4.0e-1635.22PREDICTED: uncharacterized protein LOC107429042 [Ziziphus jujuba][more]
gi|694397200|ref|XP_009373859.1|4.4e-1536.97PREDICTED: uncharacterized protein LOC103962815 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g03110.1Cp4.1LG17g03110.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34964FAMILY NOT NAMEDcoord: 1..114
score: 3.4
NoneNo IPR availablePANTHERPTHR34964:SF1MEMBRANE LIPOPROTEIN-RELATEDcoord: 1..114
score: 3.4

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g03110Cucurbita pepo (Zucchini)cpecpeB161
Cp4.1LG17g03110Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG17g03110Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG17g03110Cucumber (Gy14) v1cgycpeB0547
Cp4.1LG17g03110Cucumber (Gy14) v1cgycpeB0675
Cp4.1LG17g03110Cucurbita maxima (Rimu)cmacpeB380
Cp4.1LG17g03110Cucurbita maxima (Rimu)cmacpeB823
Cp4.1LG17g03110Cucurbita maxima (Rimu)cmacpeB916
Cp4.1LG17g03110Cucurbita moschata (Rifu)cmocpeB342
Cp4.1LG17g03110Cucurbita moschata (Rifu)cmocpeB777
Cp4.1LG17g03110Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g03110Wild cucumber (PI 183967)cpecpiB304
Cp4.1LG17g03110Cucumber (Chinese Long) v2cpecuB305
Cp4.1LG17g03110Watermelon (Charleston Gray)cpewcgB293
Cp4.1LG17g03110Watermelon (Charleston Gray)cpewcgB294
Cp4.1LG17g03110Watermelon (Charleston Gray)cpewcgB303
Cp4.1LG17g03110Watermelon (97103) v1cpewmB331
Cp4.1LG17g03110Watermelon (97103) v1cpewmB334
Cp4.1LG17g03110Melon (DHL92) v3.5.1cpemeB310
Cp4.1LG17g03110Melon (DHL92) v3.5.1cpemeB313
Cp4.1LG17g03110Melon (DHL92) v3.5.1cpemeB316
Cp4.1LG17g03110Cucumber (Gy14) v2cgybcpeB201
Cp4.1LG17g03110Melon (DHL92) v3.6.1cpemedB362
Cp4.1LG17g03110Melon (DHL92) v3.6.1cpemedB365
Cp4.1LG17g03110Melon (DHL92) v3.6.1cpemedB371
Cp4.1LG17g03110Silver-seed gourdcarcpeB0323
Cp4.1LG17g03110Silver-seed gourdcarcpeB0324
Cp4.1LG17g03110Silver-seed gourdcarcpeB1330
Cp4.1LG17g03110Cucumber (Chinese Long) v3cpecucB0375
Cp4.1LG17g03110Cucumber (Chinese Long) v3cpecucB0385