Cp4.1LG17g02930 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g02930
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSerine hydroxymethyltransferase
LocationCp4.1LG17 : 1848307 .. 1850992 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCCGTCAATGCATGGGGCAACACTCCTCTTGAAGCTGTCGACCCTGAGATCTTCGATCTAATCGAGAAGGAGAAGCGTCGACAATGCCGTGGAATCGAGCTTATTGCCTCTGAGAATTTCACTTCCTTCGCTGTCATCGAGGCCCTCGGTAGCGCCTTGACCAACAAATACTCCGAGGGCATGCCGGGTAACCGATACTATGGTGGCAACGAGTTCATCGACGAGATCGAGAATCTCTGCCGTTCTAGAGCCCTCCAGGCCTTCCATGTCGATCCTGCCAAATGGGGCGTAAATGTCCAGCCCTACTCTGGTTCTCCGGCGAATTTCGCTGCCTACACGGCGTTGCTTCAGCCGCATGACCGTATTATGGGGCTGGATCTTCCTTCTGGTGGCCATTTGACGCATGGTTACTACACTTCCGGTGGGAAGAAGATCTCTGCTACCTCGATTTACTTCGAGAGTTTGCCTTACAAGGTTAATTCCTCCACTGGATATATTGATTACGAGAAGTTGGAGGAGAAGGCTTTGGATTTCAGGCCGAAGCTGATTATCTGTGGTGGCAGTGCATACCCTAGGGACTGGGATTACGCCAAATTCAGAGCAATTGCCGACAAATGTGGTGCCCTTCTGCTTTGTGATATGGCTCACATTAGTGGTCTCGTTGCTGCTCAGGTATATGAATCGTGTTCAGATCTTTTGTCAGCTTGTCTTGTGAATGTTGGTAACTGGATGTTGTTTGTTTTTCCATTTCTGGATTTGGGATCTGTGGATTTCTGTTGAACTTGCTTTTCTCGATGATAAGCTCAATTCTTTCATACTTGTCTTTCGTCTTTGTGTTCAATTGATTAGTAATGGTTAGAAATGGCACAGGTTGTTAGATCCATAATTGTTTGAGCATCCTCGTAACAGGATCTGGCTTTTTGAAAACTTATTTAATGATAAGTATTGATGCTGCATTGATTCTTTGTAACAGAAGCTAACTTGTGTTCTTTTTATACGTTGAACTATGAAGTTTTTCATTGTTTTTGTCAAATATTTTTTGTATTCCTTGTTTGTACCATAAGATTCAGTTTTAAATGCTTAGTTGAAAATTGAAATGAAGCTCTGCTTCCAGGAAAGGGATACATTTCTGCTTCTGGTTGAATTCAGTTTCAATGTAAAACAAATCCTGTGATATCATCTTTTTTGCTTTGAATTTACATTACGTTTTCTTTTTGAAAAATTATTCGAAGGCATATTTCTTCTAACACATTTCTTATGGTTGTTTATGATCTCTGTTTCCTTTCTTGCAACTTAAGCTACCTGGGTATTGCTGGTATTGTAAAATAATAGTGCACAATGACTGTTTTTAGGAAGCTGCAAACCCGTTCGAGTATTGTGACGTTGTCACGACCACAACTCACAAGAGTTTGAGGGGTCCGAGGGCTGGTATGATCTTCTATAGGAAGGGTCCAAAGCCACCAAAGAAGGGTCAGCCTGAGGATGCTGTTTATGACTTCGAAGACAAGATCAACTTCTCTGTCTTCCCTGCCCTTCAAGGTGGCCCTCACAATCACCAAATTGGTGCTTTAGCTGTTGCCTTGAAGCAGGCTATGGCCCCCGGGTTCAAGGTCTATGCAAAACAAGTTAAGGCCAATGCTGTAGCCCTTGGAAATTACCTGATGAGCAAGGGCTACAAGCTTGTCACTGGCGGAACTGAGAACCACCTCGTTCTCTGGGATCTTCGTCCTCTAGGATTGACTGGTAATTTCGTGCAAACGAACCTAAGAAAACAAACAGAAAGAACATGTTCTGTTCTGTTCGTGTGACTTTTTCGTGGTAATTCCTTTTGCAGGCAACAAGGTTGAAAAGCTTTGCGACCTGTGCAACATTACTGTAAACAAGAACGCCGTGTTCGGCGACAGCAGTGCATTGGCTCCCGGAGGTGTTCGGATCGGTAAGTTCCAATATCGCTGATAGATGATTTCATCATCCACAGTCCTCTTAAGAACTTGTTTTTCTTGCAATCAATCGATGAGTTACTATCTATATTTAAGCGTGTGATTAACAAGACACCATATTGCAATGCGATAGGTGCACCTGCCATGACATCGAGAGGTTTGGTCGAGAAAGACTTCGAACAGATCGCAGAGTTCCTTCACCGTGCTATAACCATCACCTTGAACATCCAGAAGGAATATGGAAAGCTGTTGAAGGACTTCAACAAGGGTCTGGTAAACAACAAGGAAATCGAAGAGCTCAAGGCCGACGTTGAGAAATTCTCTGCCTCATTCGACATGCCCGGTTTCCTCATGTCCGAGATGAAGTACAAGGACTAGAAAGCAAACAACAACAACAAGATCTAAAGTTTTGGGTGTTTGTCGAATCTTTAAAATCGTTCACTTCTAAAGCTGAAAAGGTAAAAAAGAAAAGATTGCTTTTAGTTTATTATCTTTTATTTTTCCAGCAAGATGTAGACTTACATTTTCCTTCGCTAATGTTTATTCGCAAGTTTAATGCTAAGAAAAGAAGTTTTGGGCTTGATAGAGAAGCCCAATTTCAAATTTGTAAGCTCCAAGGCCCATATCAGAACAAGACTTTGGGCCACCACGGCCCATATTTTTTGCAATGGGCTCCTCTATCCTTCATTTATTTTGGGCTTTTAGAGGATTATTGGGCCTATCATTACTCTTTTAGTTGA

mRNA sequence

ATGGATCCCGTTAATTCCTCCACTGGATATATTGATTACGAGAAGTTGGAGGAGAAGGCTTTGGATTTCAGGCCGAAGCTGATTATCTGTGGTGGCAGTGCATACCCTAGGGACTGGGATTACGCCAAATTCAGAGCAATTGCCGACAAATGTGGTGCCCTTCTGCTTTGTGATATGGCTCACATTAGTGGTCTCGTTGCTGCTCAGGTTGAAAAGCTTTGCGACCTGTGCAACATTACTGTAAACAAGAACGCCGTGTTCGGCGACAGCAGTGCATTGGCTCCCGGAGGTGTTCGGATCGGTGCACCTGCCATGACATCGAGAGGTTTGGTCGAGAAAGACTTCGAACAGATCGCAGAGTTCCTTCACCGTGCTATAACCATCACCTTGAACATCCAGAAGGAATATGGAAAGCTGTTGAAGGACTTCAACAAGGGTCTGGTAAACAACAAGGAAATCGAAGAGCTCAAGGCCGACGTTGAGAAATTCTCTGCCTCATTCGACATGCCCGGTTTCCTCATGTCCGAGATGAAGTACAAGGACTAGAAAGCAAACAACAACAACAAGATCTAAAGTTTTGGGTGTTTGTCGAATCTTTAAAATCGTTCACTTCTAAAGCTGAAAAGGTAAAAAAGAAAAGATTGCTTTTAGTTTATTATCTTTTATTTTTCCAGCAAGATGTAGACTTACATTTTCCTTCGCTAATGTTTATTCGCAAGTTTAATGCTAAGAAAAGAAGTTTTGGGCTTGATAGAGAAGCCCAATTTCAAATTTGTAAGCTCCAAGGCCCATATCAGAACAAGACTTTGGGCCACCACGGCCCATATTTTTTGCAATGGGCTCCTCTATCCTTCATTTATTTTGGGCTTTTAGAGGATTATTGGGCCTATCATTACTCTTTTAGTTGA

Coding sequence (CDS)

ATGGATCCCGTTAATTCCTCCACTGGATATATTGATTACGAGAAGTTGGAGGAGAAGGCTTTGGATTTCAGGCCGAAGCTGATTATCTGTGGTGGCAGTGCATACCCTAGGGACTGGGATTACGCCAAATTCAGAGCAATTGCCGACAAATGTGGTGCCCTTCTGCTTTGTGATATGGCTCACATTAGTGGTCTCGTTGCTGCTCAGGTTGAAAAGCTTTGCGACCTGTGCAACATTACTGTAAACAAGAACGCCGTGTTCGGCGACAGCAGTGCATTGGCTCCCGGAGGTGTTCGGATCGGTGCACCTGCCATGACATCGAGAGGTTTGGTCGAGAAAGACTTCGAACAGATCGCAGAGTTCCTTCACCGTGCTATAACCATCACCTTGAACATCCAGAAGGAATATGGAAAGCTGTTGAAGGACTTCAACAAGGGTCTGGTAAACAACAAGGAAATCGAAGAGCTCAAGGCCGACGTTGAGAAATTCTCTGCCTCATTCGACATGCCCGGTTTCCTCATGTCCGAGATGAAGTACAAGGACTAG

Protein sequence

MDPVNSSTGYIDYEKLEEKALDFRPKLIICGGSAYPRDWDYAKFRAIADKCGALLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFLMSEMKYKD
Homology
[Close]
BLAST of Cp4.1LG17g02930 vs. Swiss-Prot
Match: GLYC4_ARATH (Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana GN=SHM4 PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-52
Identity = 103/128 (80.47%), Postives = 118/128 (92.19%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEKLCDLC+IT+NKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK
Sbjct: 345 LVLWDLRPL-GLTGNKVEKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFEQI EFL RA+T+TL+IQK YGKLLKDFNKGLVNNK++++LKADVEKFSAS++MPGFL
Sbjct: 405 DFEQIGEFLSRAVTLTLDIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPGFL 464

Query: 174 MSEMKYKD 182
           MSEMKYKD
Sbjct: 465 MSEMKYKD 471

[Close]
BLAST of Cp4.1LG17g02930 vs. Swiss-Prot
Match: GLYC5_ARATH (Serine hydroxymethyltransferase 5 OS=Arabidopsis thaliana GN=SHM5 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-45
Identity = 88/125 (70.40%), Postives = 110/125 (88.00%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEK+C+LC IT+N+NAVFGD+S LAPGGVRIG PAMTSRGLVEK
Sbjct: 345 LILWDLRPL-GLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFE+I EFLHRA+TITL+IQ++YGK++KDFNKGLVNNKEI+E+KADVE+F+  FDMPGF 
Sbjct: 405 DFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFF 464

Query: 174 MSEMK 179
           +SE +
Sbjct: 465 ISESR 468

[Close]
BLAST of Cp4.1LG17g02930 vs. Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-28
Identity = 54/110 (49.09%), Postives = 87/110 (79.09%), Query Frame = 1 

Query: 64  GLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIAEFLH 123
           G+  +++EK CD  +ITVNKNAV+GD++A+APGGVR+GAPA+TSRGL E+DF ++ +FL 
Sbjct: 372 GITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLD 431

Query: 124 RAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 174
           R + I+L+IQ + GK + DF + + +N+++++++ +V++FS  F MPG L
Sbjct: 432 RVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPGEL 481

[Close]
BLAST of Cp4.1LG17g02930 vs. Swiss-Prot
Match: GLYC7_ARATH (Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana GN=SHM7 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.8e-27
Identity = 60/121 (49.59%), Postives = 86/121 (71.07%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           LLL D+  + GL     EK+C++C+IT+NK A+FGD+  ++PGGVRIG PAMT+RG +E 
Sbjct: 476 LLLWDLTPM-GLTGKVYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTTRGCIES 535

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFE +A+FL +A  IT  +Q+E+GK  K+F K L  NK+I EL+  VE F+  ++MP  L
Sbjct: 536 DFETMADFLIKAAQITSALQREHGKSHKEFVKSLCTNKDIAELRNRVEAFALQYEMPASL 595

Query: 174 M 175
           +
Sbjct: 596 I 595

[Close]
BLAST of Cp4.1LG17g02930 vs. Swiss-Prot
Match: GLYC6_ARATH (Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana GN=SHM6 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-25
Identity = 59/121 (48.76%), Postives = 84/121 (69.42%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           LLL D+  + GL     EK+C++C+ITVNK A+F ++  ++PGGVRIG+PAMTSRG +E 
Sbjct: 480 LLLWDLTPL-GLTGKVYEKVCEMCHITVNKVAIFSENGVISPGGVRIGSPAMTSRGCLEP 539

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           +FE +A+FL+RA  I    Q+E+GKL K+  K + + KEI +L+  VE F+  F MP F 
Sbjct: 540 EFETMADFLYRAAQIASAAQREHGKLQKEPLKSIYHCKEIADLRNQVEAFATQFAMPAFD 599

Query: 174 M 175
           M
Sbjct: 600 M 599

[Close]
BLAST of Cp4.1LG17g02930 vs. TrEMBL
Match: A0A0A0LKC8_CUCSA (Serine hydroxymethyltransferase OS=Cucumis sativus GN=Csa_2G145880 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-55
Identity = 113/128 (88.28%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK
Sbjct: 345 LVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFEQIAEFLHRA+TITLN+QKEYGKLLKDFNKGLVNNKEIE+LKADVEKFS SFDMPGFL
Sbjct: 405 DFEQIAEFLHRAVTITLNVQKEYGKLLKDFNKGLVNNKEIEKLKADVEKFSGSFDMPGFL 464

Query: 174 MSEMKYKD 182
           MSEMKYKD
Sbjct: 465 MSEMKYKD 471

[Close]
BLAST of Cp4.1LG17g02930 vs. TrEMBL
Match: K4C261_SOLLC (Serine hydroxymethyltransferase OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.2e-54
Identity = 111/128 (86.72%), Postives = 118/128 (92.19%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEKLCDLCNITVNKNAVFGDSSALAPGGVRIG PAMTSRGLVEK
Sbjct: 345 LVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFEQIAEFLHRA+TITLNIQKE+GKLLKDFNKGLVNNKEIEELK DVEKFSASFDMPGF 
Sbjct: 405 DFEQIAEFLHRAVTITLNIQKEFGKLLKDFNKGLVNNKEIEELKVDVEKFSASFDMPGFK 464

Query: 174 MSEMKYKD 182
           MSEMKY+D
Sbjct: 465 MSEMKYQD 471

[Close]
BLAST of Cp4.1LG17g02930 vs. TrEMBL
Match: M1BAA6_SOLTU (Serine hydroxymethyltransferase OS=Solanum tuberosum GN=PGSC0003DMG400015745 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.2e-54
Identity = 111/128 (86.72%), Postives = 118/128 (92.19%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEKLCDLCNITVNKNAVFGDSSALAPGGVRIG PAMTSRGLVEK
Sbjct: 345 LVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFEQIAEFLHRA+TITLNIQKE+GKLLKDFNKGLVNNKEIEELK DVEKFSASFDMPGF 
Sbjct: 405 DFEQIAEFLHRAVTITLNIQKEFGKLLKDFNKGLVNNKEIEELKVDVEKFSASFDMPGFK 464

Query: 174 MSEMKYKD 182
           MSEMKY+D
Sbjct: 465 MSEMKYQD 471

[Close]
BLAST of Cp4.1LG17g02930 vs. TrEMBL
Match: A0A0V0IFG5_SOLCH (Serine hydroxymethyltransferase OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.2e-54
Identity = 111/128 (86.72%), Postives = 118/128 (92.19%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEKLCDLCNITVNKNAVFGDSSALAPGGVRIG PAMTSRGLVEK
Sbjct: 345 LVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFEQIAEFLHRA+TITLNIQKE+GKLLKDFNKGLVNNKEIEELK DVEKFSASFDMPGF 
Sbjct: 405 DFEQIAEFLHRAVTITLNIQKEFGKLLKDFNKGLVNNKEIEELKVDVEKFSASFDMPGFK 464

Query: 174 MSEMKYKD 182
           MSEMKY+D
Sbjct: 465 MSEMKYQD 471

[Close]
BLAST of Cp4.1LG17g02930 vs. TrEMBL
Match: G7JAR7_MEDTR (Serine hydroxymethyltransferase OS=Medicago truncatula GN=MTR_3g084310 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53
Identity = 109/128 (85.16%), Postives = 119/128 (92.97%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK
Sbjct: 345 LVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFEQIAEFLHRA+T+TL IQKEYGKLLKDFNKGLVNNK +E+LKADVEKFSASFDMPGFL
Sbjct: 405 DFEQIAEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKALEDLKADVEKFSASFDMPGFL 464

Query: 174 MSEMKYKD 182
           +SE+KYKD
Sbjct: 465 VSELKYKD 471

[Close]
BLAST of Cp4.1LG17g02930 vs. TAIR10
Match: AT4G13930.1 (AT4G13930.1 serine hydroxymethyltransferase 4)

HSP 1 Score: 207.6 bits (527), Expect = 6.4e-54
Identity = 103/128 (80.47%), Postives = 118/128 (92.19%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEKLCDLC+IT+NKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK
Sbjct: 345 LVLWDLRPL-GLTGNKVEKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFEQI EFL RA+T+TL+IQK YGKLLKDFNKGLVNNK++++LKADVEKFSAS++MPGFL
Sbjct: 405 DFEQIGEFLSRAVTLTLDIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPGFL 464

Query: 174 MSEMKYKD 182
           MSEMKYKD
Sbjct: 465 MSEMKYKD 471

[Close]
BLAST of Cp4.1LG17g02930 vs. TAIR10
Match: AT4G13890.1 (AT4G13890.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein)

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-46
Identity = 88/125 (70.40%), Postives = 110/125 (88.00%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEK+C+LC IT+N+NAVFGD+S LAPGGVRIG PAMTSRGLVEK
Sbjct: 345 LILWDLRPL-GLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFE+I EFLHRA+TITL+IQ++YGK++KDFNKGLVNNKEI+E+KADVE+F+  FDMPGF 
Sbjct: 405 DFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFF 464

Query: 174 MSEMK 179
           +SE +
Sbjct: 465 ISESR 468

[Close]
BLAST of Cp4.1LG17g02930 vs. TAIR10
Match: AT1G36370.1 (AT1G36370.1 serine hydroxymethyltransferase 7)

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-28
Identity = 60/121 (49.59%), Postives = 86/121 (71.07%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           LLL D+  + GL     EK+C++C+IT+NK A+FGD+  ++PGGVRIG PAMT+RG +E 
Sbjct: 476 LLLWDLTPM-GLTGKVYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTTRGCIES 535

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFE +A+FL +A  IT  +Q+E+GK  K+F K L  NK+I EL+  VE F+  ++MP  L
Sbjct: 536 DFETMADFLIKAAQITSALQREHGKSHKEFVKSLCTNKDIAELRNRVEAFALQYEMPASL 595

Query: 174 M 175
           +
Sbjct: 596 I 595

[Close]
BLAST of Cp4.1LG17g02930 vs. TAIR10
Match: AT1G22020.1 (AT1G22020.1 serine hydroxymethyltransferase 6)

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-26
Identity = 59/121 (48.76%), Postives = 84/121 (69.42%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           LLL D+  + GL     EK+C++C+ITVNK A+F ++  ++PGGVRIG+PAMTSRG +E 
Sbjct: 480 LLLWDLTPL-GLTGKVYEKVCEMCHITVNKVAIFSENGVISPGGVRIGSPAMTSRGCLEP 539

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           +FE +A+FL+RA  I    Q+E+GKL K+  K + + KEI +L+  VE F+  F MP F 
Sbjct: 540 EFETMADFLYRAAQIASAAQREHGKLQKEPLKSIYHCKEIADLRNQVEAFATQFAMPAFD 599

Query: 174 M 175
           M
Sbjct: 600 M 599

[Close]
BLAST of Cp4.1LG17g02930 vs. TAIR10
Match: AT4G32520.1 (AT4G32520.1 serine hydroxymethyltransferase 3)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-22
Identity = 56/124 (45.16%), Postives = 84/124 (67.74%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + G+  A+VEK+ D+ +IT+NKN+V GD SAL PGG+RIG+PAMT+RGL EK
Sbjct: 406 LVLVDLRPM-GMDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLSEK 465

Query: 114 DFEQIAEFLHRAITITLNIQKEY-GKLLKDFNKGLVN-----NKEIEELKADVEKFSASF 172
           DF  +A+F+   + IT+  +K   G  L+DFNK + +      + ++ LK  VE F++ F
Sbjct: 466 DFVVVADFIKEGVEITMEAKKAAPGSKLQDFNKFVTSPEFPLKERVKSLKERVETFTSRF 525

[Close]
BLAST of Cp4.1LG17g02930 vs. NCBI nr
Match: gi|659114777|ref|XP_008457222.1| (PREDICTED: serine hydroxymethyltransferase 4 [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 4.9e-56
Identity = 115/128 (89.84%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK
Sbjct: 345 LVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFEQIAEFLHRA+TITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFS SFDMPGFL
Sbjct: 405 DFEQIAEFLHRAVTITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSGSFDMPGFL 464

Query: 174 MSEMKYKD 182
           MSEMKYKD
Sbjct: 465 MSEMKYKD 471

[Close]
BLAST of Cp4.1LG17g02930 vs. NCBI nr
Match: gi|449442395|ref|XP_004138967.1| (PREDICTED: serine hydroxymethyltransferase 4 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.9e-55
Identity = 113/128 (88.28%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK
Sbjct: 345 LVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFEQIAEFLHRA+TITLN+QKEYGKLLKDFNKGLVNNKEIE+LKADVEKFS SFDMPGFL
Sbjct: 405 DFEQIAEFLHRAVTITLNVQKEYGKLLKDFNKGLVNNKEIEKLKADVEKFSGSFDMPGFL 464

Query: 174 MSEMKYKD 182
           MSEMKYKD
Sbjct: 465 MSEMKYKD 471

[Close]
BLAST of Cp4.1LG17g02930 vs. NCBI nr
Match: gi|565399870|ref|XP_006365464.1| (PREDICTED: serine hydroxymethyltransferase 4 [Solanum tuberosum])

HSP 1 Score: 219.2 bits (557), Expect = 6.0e-54
Identity = 111/128 (86.72%), Postives = 118/128 (92.19%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEKLCDLCNITVNKNAVFGDSSALAPGGVRIG PAMTSRGLVEK
Sbjct: 345 LVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFEQIAEFLHRA+TITLNIQKE+GKLLKDFNKGLVNNKEIEELK DVEKFSASFDMPGF 
Sbjct: 405 DFEQIAEFLHRAVTITLNIQKEFGKLLKDFNKGLVNNKEIEELKVDVEKFSASFDMPGFK 464

Query: 174 MSEMKYKD 182
           MSEMKY+D
Sbjct: 465 MSEMKYQD 471

[Close]
BLAST of Cp4.1LG17g02930 vs. NCBI nr
Match: gi|460388388|ref|XP_004239849.1| (PREDICTED: serine hydroxymethyltransferase 4 [Solanum lycopersicum])

HSP 1 Score: 219.2 bits (557), Expect = 6.0e-54
Identity = 111/128 (86.72%), Postives = 118/128 (92.19%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEKLCDLCNITVNKNAVFGDSSALAPGGVRIG PAMTSRGLVEK
Sbjct: 345 LVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFEQIAEFLHRA+TITLNIQKE+GKLLKDFNKGLVNNKEIEELK DVEKFSASFDMPGF 
Sbjct: 405 DFEQIAEFLHRAVTITLNIQKEFGKLLKDFNKGLVNNKEIEELKVDVEKFSASFDMPGFK 464

Query: 174 MSEMKYKD 182
           MSEMKY+D
Sbjct: 465 MSEMKYQD 471

[Close]
BLAST of Cp4.1LG17g02930 vs. NCBI nr
Match: gi|698480063|ref|XP_009787093.1| (PREDICTED: serine hydroxymethyltransferase 4-like [Nicotiana sylvestris])

HSP 1 Score: 218.0 bits (554), Expect = 1.3e-53
Identity = 111/128 (86.72%), Postives = 118/128 (92.19%), Query Frame = 1 

Query: 54  LLLCDMAHISGLVAAQVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEK 113
           L+L D+  + GL   +VEKLCDL NITVNKNAVFGDSSALAPGGVRIG PAMTSRGLVEK
Sbjct: 345 LVLWDLRPL-GLTGNKVEKLCDLANITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEK 404

Query: 114 DFEQIAEFLHRAITITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFL 173
           DFEQIAEFLHRA+TITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFS+SFDMPGF 
Sbjct: 405 DFEQIAEFLHRAVTITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFSSSFDMPGFK 464

Query: 174 MSEMKYKD 182
           +SEMKYKD
Sbjct: 465 LSEMKYKD 471

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g02930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GLYC4_ARATH1.1e-5280.47Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana GN=SHM4 PE=1 SV=1[more]
GLYC5_ARATH2.3e-4570.40Serine hydroxymethyltransferase 5 OS=Arabidopsis thaliana GN=SHM5 PE=3 SV=1[more]
GLYC2_DICDI2.0e-2849.09Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1[more]
GLYC7_ARATH2.8e-2749.59Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana GN=SHM7 PE=2 SV=1[more]
GLYC6_ARATH4.5e-2548.76Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana GN=SHM6 PE=2 SV=1[more]
BLAST of Cp4.1LG17g02930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKC8_CUCSA1.3e-5588.28Serine hydroxymethyltransferase OS=Cucumis sativus GN=Csa_2G145880 PE=3 SV=1[more]
K4C261_SOLLC4.2e-5486.72Serine hydroxymethyltransferase OS=Solanum lycopersicum PE=3 SV=1[more]
M1BAA6_SOLTU4.2e-5486.72Serine hydroxymethyltransferase OS=Solanum tuberosum GN=PGSC0003DMG400015745 PE=... [more]
A0A0V0IFG5_SOLCH4.2e-5486.72Serine hydroxymethyltransferase OS=Solanum chacoense PE=3 SV=1[more]
G7JAR7_MEDTR1.2e-5385.16Serine hydroxymethyltransferase OS=Medicago truncatula GN=MTR_3g084310 PE=3 SV=1[more]
BLAST of Cp4.1LG17g02930 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G13930.16.4e-5480.47 serine hydroxymethyltransferase 4[more]
AT4G13890.11.3e-4670.40 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein[more]
AT1G36370.11.6e-2849.59 serine hydroxymethyltransferase 7[more]
AT1G22020.12.5e-2648.76 serine hydroxymethyltransferase 6[more]
AT4G32520.11.3e-2245.16 serine hydroxymethyltransferase 3[more]
BLAST of Cp4.1LG17g02930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114777|ref|XP_008457222.1|4.9e-5689.84PREDICTED: serine hydroxymethyltransferase 4 [Cucumis melo][more]
gi|449442395|ref|XP_004138967.1|1.9e-5588.28PREDICTED: serine hydroxymethyltransferase 4 [Cucumis sativus][more]
gi|565399870|ref|XP_006365464.1|6.0e-5486.72PREDICTED: serine hydroxymethyltransferase 4 [Solanum tuberosum][more]
gi|460388388|ref|XP_004239849.1|6.0e-5486.72PREDICTED: serine hydroxymethyltransferase 4 [Solanum lycopersicum][more]
gi|698480063|ref|XP_009787093.1|1.3e-5386.72PREDICTED: serine hydroxymethyltransferase 4-like [Nicotiana sylvestris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
IPR015422PyrdxlP-dep_Trfase_dom1
IPR015421PyrdxlP-dep_Trfase_major
IPR001085Ser_HO-MeTrfase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
biological_process GO:0044763 single-organism cellular process
biological_process GO:0044281 small molecule metabolic process
biological_process GO:0008150 biological_process
biological_process GO:0019264 glycine biosynthetic process from serine
biological_process GO:0035999 tetrahydrofolate interconversion
cellular_component GO:0005575 cellular_component
molecular_function GO:0016740 transferase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004372 glycine hydroxymethyltransferase activity
molecular_function GO:0030170 pyridoxal phosphate binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g02930.1Cp4.1LG17g02930.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001085Serine hydroxymethyltransferasePANTHERPTHR11680SERINE HYDROXYMETHYLTRANSFERASEcoord: 4..177
score: 2.2
IPR001085Serine hydroxymethyltransferasePFAMPF00464SHMTcoord: 4..70
score: 4.2
IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1GENE3DG3DSA:3.40.640.10coord: 4..65
score: 4.8
IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2GENE3DG3DSA:3.90.1150.10coord: 66..173
score: 5.6
IPR015424Pyridoxal phosphate-dependent transferaseunknownSSF53383PLP-dependent transferasescoord: 68..173
score: 3.61E-24coord: 3..70
score: 6.3
NoneNo IPR availablePANTHERPTHR11680:SF11SUBFAMILY NOT NAMEDcoord: 4..177
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g02930MELO3C020429.2Melon (DHL92) v3.6.1cpemedB367
Cp4.1LG17g02930Bhi12G001286Wax gourdcpewgoB0383
Cp4.1LG17g02930Carg10149Silver-seed gourdcarcpeB0324
Cp4.1LG17g02930Carg11050Silver-seed gourdcarcpeB1503
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g02930Cp4.1LG12g00940Cucurbita pepo (Zucchini)cpecpeB161
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g02930Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG17g02930Cucurbita pepo (Zucchini)cpecpeB339
Cp4.1LG17g02930Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG17g02930Cucurbita pepo (Zucchini)cpecpeB344
Cp4.1LG17g02930Cucumber (Gy14) v1cgycpeB0675
Cp4.1LG17g02930Cucumber (Gy14) v1cgycpeB0679
Cp4.1LG17g02930Cucurbita maxima (Rimu)cmacpeB823
Cp4.1LG17g02930Cucurbita maxima (Rimu)cmacpeB916
Cp4.1LG17g02930Cucurbita moschata (Rifu)cmocpeB234
Cp4.1LG17g02930Cucurbita moschata (Rifu)cmocpeB777
Cp4.1LG17g02930Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g02930Bottle gourd (USVL1VR-Ls)cpelsiB252
Cp4.1LG17g02930Watermelon (Charleston Gray)cpewcgB293
Cp4.1LG17g02930Watermelon (Charleston Gray)cpewcgB303
Cp4.1LG17g02930Watermelon (97103) v1cpewmB331
Cp4.1LG17g02930Watermelon (97103) v1cpewmB343
Cp4.1LG17g02930Melon (DHL92) v3.5.1cpemeB316
Cp4.1LG17g02930Cucumber (Gy14) v2cgybcpeB351
Cp4.1LG17g02930Melon (DHL92) v3.6.1cpemedB369
Cp4.1LG17g02930Melon (DHL92) v3.6.1cpemedB371
Cp4.1LG17g02930Silver-seed gourdcarcpeB0323
Cp4.1LG17g02930Silver-seed gourdcarcpeB0882
Cp4.1LG17g02930Silver-seed gourdcarcpeB1330
Cp4.1LG17g02930Cucumber (Chinese Long) v3cpecucB0381
Cp4.1LG17g02930Cucumber (Chinese Long) v3cpecucB0385