Cp4.1LG17g01630 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g01630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA-directed RNA polymerase III subunit RPC9
LocationCp4.1LG17 : 1025711 .. 1028042 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGCATACAATTGGGATTTGTTCGGTAATTGGCGATTTGGGCTCGACGAAGGGTTTTTGTCGCCGTCGTCGAGGGGTTTCTGGTTCCGGCCAAATTCTGAAGCTTCTTCTCAATGAAAATGTATGCTCTGAATCTTCACTCTTTCTGTAATTTTTGCAATCTTGTTCCAACTACTTGATTCTGCGATTGAACAGAGGTTTCAATTTACTGTCGCTAACAGTTTGATCGGAACTGTCGTTTGCAGATTAGAGGCAAACGCAGGCCCTCTTACTAATTTCGAGGTTCTCGACTTTCTAAGATCAAAGGGAGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAAGTGGTACCATCCGAGTACAAGGTTATATTTCTATTTCCTTCTTCTGTGCTGGCCTACGAGTTCTTATGTTGCAAGTTTCGATTGGATCTTTTTTTGTTTTTGTTTTTAGGTTTATGATTATTTGAATCAAACTCCTGCTTCTTATCAAACAAGAGAAGCTATTCTTGAGTTTGTTGACAAGTCCAAAAAGTATGATCTAGCGAAAGCTGAAATTCTGAATATCGTTAACTTGGGGCCGATTACTCCGGTTGAGATATTTCCGGTAATTTCTCCCTCTCTTTCCTCCTTTCATTACATGAATTCTTCATACTTTATGCTATGTTTTTTGTATGTGATCTCTGTTCTAAACTCATCTTCGATTTTCCCATATTCAATGAGGCCTTTTCTTTTAATTTGTGCCTTCCAACTTTTTCTTGAAGAACCTACGTTTAAGAAGTCGAGGAGCTGTGAATTCCTGTAGAAATTTTAGAGGACTGATGAGATATACTATTTCAGCCATGTTCATATGACGCCTTCTTTTTGCATTTTTAATGTTTAGAACAGATTTACGTAGTCTTGGTTGCTTTTCACTTCTCTGTTGACATTATAAAAGCTTAAGATTCCTCTAGCTATGGAGCACATTTGTCTGAGTATTGAGAACTTGATCGAAGTAGATGTCAGAAATTGTAGCTAAAATTCAACTGTAGATCTCAATCAATTAGTCTGAAGTTCTGTAAAGACTTGGGGGTGGTCGGAAGGATTCCTTATACAGCATTCTGCTTTTTTGGACAAAAGTTCTACTCATTCACAAATAGTCTAGTCTGTAGTTCTGTAAATACTTGGGGGTGATCTTAATCAATTATGCTAAAATTCTTACCTCTGAGTACAAATGTTCTGCTTCTTGTATTATACTTATGGCCCATTCGATTACATCTCCAAGAGGTTTTGCCCACCTCAAGTCTTGATCCGGAAGACAAAAAGAGCTTTTTTAGTTGTTAAGTTTTGTTCTTGAGACTTAAATATATGTTCAAACATTCTAAACTCTTGTCAACTACTACTGGGCCATTCTTGGAAAGTAAGGTTGTTTTTCAAATAGATCCCAAACCAAATTCTCGTCTTCTTGTGTTTTGTTTGATCATGATTCTTTTCCTCTGCTGGGATGCTTTGTTTTGGTGTTCATGTAAGAACCTGGACGAAGGAAATGAAAACATTTGGATAAGTGGTTGGATTGAGATGCAGATTAATTGGGGTTAATTCCTTTTGTTTCTAGATTATAGAAGAAAGTGATGTTCGTATGGGAGATGATGGAATTCAAGAGCTTACGGAGATGGTGGAACAGGTGTTCCCCGCACCTCAATCAACATCCGAAGTAGCTCCAAAGGAATGTAAAGAGGCCGAAGCCATGGAGAAGGAGGAAGGAGTTGGGGGTGCCGATGAAGAAACCATGGTAACAACTTGAACCCATTTCAAAACTTAGGCGAATGTCTGTAGATTAAGCCTAAATTTGCTGCCTCAGTTCAAAAAGAGCTTCCACAAGGTTGGCCTGTAAACGATAAACCCAAAAAGACATGGCTCTGTACTGCATCTTCAAGCCTTAACTCGACTATTCATAATGTGTAGACAAGGGTTTTAGGTGAAAAAGATAGAAACTGAGAGGGACAGTTCCCAAAAATAGAATGAGAAATCAAAGTTAAAGAAAGCTTTTGAGTGGTAAACAACGAAAATAGCTGGGCTTCTTTTCATCACTATTCTTCTGTTTGTTAAATATACCCTAATATTTTAGACATGGAAGAAGAAGCCGAGATTTTCTTTTCCCTAGGGTACTCCCCATCTCCTTACAAAGCAACAGCAGAAGCAGCACATGCTCCCGACACTGAATTACTGACAGCAACATTACATACTCTCATAATTTTAGCGTCATATCATACATACTAGATATTATCTTATGCATCAGACCCCCTATACTTCATATTCTCTTTTCTTTCCCTCTTCCCCATATAATGATATGAAT

mRNA sequence

CAGGCATACAATTGGGATTTGTTCGGTAATTGGCGATTTGGGCTCGACGAAGGGTTTTTGTCGCCGTCGTCGAGGGGTTTCTGGTTCCGGCCAAATTCTGAAGCTTCTTCTCAATGAAAATATTAGAGGCAAACGCAGGCCCTCTTACTAATTTCGAGGTTCTCGACTTTCTAAGATCAAAGGGAGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAAGTGGTACCATCCGAGTACAAGGTTTATGATTATTTGAATCAAACTCCTGCTTCTTATCAAACAAGAGAAGCTATTCTTGAGTTTGTTGACAAGTCCAAAAAGTATGATCTAGCGAAAGCTGAAATTCTGAATATCGTTAACTTGGGGCCGATTACTCCGGTTGAGATATTTCCGATTATAGAAGAAAGTGATGTTCGTATGGGAGATGATGGAATTCAAGAGCTTACGGAGATGGTGGAACAGGTGTTCCCCGCACCTCAATCAACATCCGAAGTAGCTCCAAAGGAATGTAAAGAGGCCGAAGCCATGGAGAAGGAGGAAGGAGTTGGGGGTGCCGATGAAGAAACCATGGTAACAACTTGAACCCATTTCAAAACTTAGGCGAATGTCTGTAGATTAAGCCTAAATTTGCTGCCTCAGTTCAAAAAGAGCTTCCACAAGGTTGGCCTGTAAACGATAAACCCAAAAAGACATGGCTCTGTACTGCATCTTCAAGCCTTAACTCGACTATTCATAATGTGTAGACAAGGGTTTTAGGTGAAAAAGATAGAAACTGAGAGGGACAGTTCCCAAAAATAGAATGAGAAATCAAAGTTAAAGAAAGCTTTTGAGTGGTAAACAACGAAAATAGCTGGGCTTCTTTTCATCACTATTCTTCTGTTTGTTAAATATACCCTAATATTTTAGACATGGAAGAAGAAGCCGAGATTTTCTTTTCCCTAGGGTACTCCCCATCTCCTTACAAAGCAACAGCAGAAGCAGCACATGCTCCCGACACTGAATTACTGACAGCAACATTACATACTCTCATAATTTTAGCGTCATATCATACATACTAGATATTATCTTATGCATCAGACCCCCTATACTTCATATTCTCTTTTCTTTCCCTCTTCCCCATATAATGATATGAAT

Coding sequence (CDS)

ATGAAAATATTAGAGGCAAACGCAGGCCCTCTTACTAATTTCGAGGTTCTCGACTTTCTAAGATCAAAGGGAGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAAGTGGTACCATCCGAGTACAAGGTTTATGATTATTTGAATCAAACTCCTGCTTCTTATCAAACAAGAGAAGCTATTCTTGAGTTTGTTGACAAGTCCAAAAAGTATGATCTAGCGAAAGCTGAAATTCTGAATATCGTTAACTTGGGGCCGATTACTCCGGTTGAGATATTTCCGATTATAGAAGAAAGTGATGTTCGTATGGGAGATGATGGAATTCAAGAGCTTACGGAGATGGTGGAACAGGTGTTCCCCGCACCTCAATCAACATCCGAAGTAGCTCCAAAGGAATGTAAAGAGGCCGAAGCCATGGAGAAGGAGGAAGGAGTTGGGGGTGCCGATGAAGAAACCATGGTAACAACTTGA

Protein sequence

MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAILEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTEMVEQVFPAPQSTSEVAPKECKEAEAMEKEEGVGGADEETMVTT
Homology
[Close]
BLAST of Cp4.1LG17g01630 vs. Swiss-Prot
Match: RPC9_CAVPO (DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus GN=CRCP PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-10
Identity = 46/146 (31.51%), Postives = 74/146 (50.68%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSE---------YKVYDYLNQTP 60
           M++ +AN+  L+N+EV   L      KD  R   K+  S          Y+   YL++TP
Sbjct: 1   MEVKDANSALLSNYEVFQLLTD---LKDQRRESGKMKHSAGQQNLNTITYETLKYLSKTP 60

Query: 61  ASYQTREAILEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRM-GDDGIQEL 120
             +Q+ E + EF+   K + L KAE L ++N  P+T VEI  ++EE++ R   ++ I+ L
Sbjct: 61  CRHQSPEIVREFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEETEERFTEEEQIEAL 120

Query: 121 TEMVEQVFPAPQSTSEVAPKECKEAE 137
              V  + PA     ++A  E  E E
Sbjct: 121 LHTVTHILPAEPEVEQMASTEAMEEE 143

[Close]
BLAST of Cp4.1LG17g01630 vs. Swiss-Prot
Match: RPC9_BOVIN (DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus GN=CRCP PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-10
Identity = 42/148 (28.38%), Postives = 76/148 (51.35%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASY 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP  +
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCKH 60

Query: 61  QTREAILEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTEMV 120
           Q+ E + EF+   K + L KAE L ++N  P+T VEI  ++EES+ R+ ++ I+ L   V
Sbjct: 61  QSPEIVREFLTAMKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV 120

Query: 121 EQVFPAPQSTSEVAPKECKEAEAMEKEE 143
             + PA     +   +   +  AM++E+
Sbjct: 121 TSILPAGPEAEQ--QQNASDDVAMDEED 146

[Close]
BLAST of Cp4.1LG17g01630 vs. Swiss-Prot
Match: RPC9_HUMAN (DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens GN=CRCP PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.0e-10
Identity = 42/148 (28.38%), Postives = 75/148 (50.68%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASY 60
           M++ +AN+  L+N+EV   L      R +      +     +    Y+   Y+++TP  +
Sbjct: 1   MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60

Query: 61  QTREAILEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTEMV 120
           Q+ E + EF+   K + L KAE L ++N  P+T VEI  ++EES+ R+ ++ I+ L   V
Sbjct: 61  QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV 120

Query: 121 EQVFPAPQSTSEVAPKECKEAEAMEKEE 143
             + PA     +   K      AM++E+
Sbjct: 121 TSILPAEPEAEQ--KKNTNSNVAMDEED 146

[Close]
BLAST of Cp4.1LG17g01630 vs. Swiss-Prot
Match: RPC9_RAT (DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus GN=Crcp PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.8e-10
Identity = 44/148 (29.73%), Postives = 73/148 (49.32%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASY 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP   
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCKN 60

Query: 61  QTREAILEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTEMV 120
           Q+   + EF+   K + L KAE L ++N  P+T VEI  ++EES+ R+ ++ I+ L   V
Sbjct: 61  QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEEQIEALLHTV 120

Query: 121 EQVFPAPQSTSEVAPKECKEAEAMEKEE 143
             + PA     +   K      AME+EE
Sbjct: 121 TSILPA--GPEDEQSKSTSNDAAMEEEE 146

[Close]
BLAST of Cp4.1LG17g01630 vs. Swiss-Prot
Match: RPC9_MOUSE (DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus GN=Crcp PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09
Identity = 44/148 (29.73%), Postives = 73/148 (49.32%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASY 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP   
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCRN 60

Query: 61  QTREAILEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTEMV 120
           Q+   + EF+   K + L KAE L ++N  P+T VEI  ++EES+ R+ ++ I+ L   V
Sbjct: 61  QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEEQIEALLHTV 120

Query: 121 EQVFPAPQSTSEVAPKECKEAEAMEKEE 143
             + PA     +   K      AME+EE
Sbjct: 121 TSILPA--GPEDEQSKSTSNDVAMEEEE 146

[Close]
BLAST of Cp4.1LG17g01630 vs. TrEMBL
Match: A0A0A0LIC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G222080 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-53
Identity = 116/160 (72.50%), Postives = 129/160 (80.62%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV+PSEYKV+DYLNQT A  QTREAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60

Query: 61  LEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTE---MVEQV 120
           + F +KSK+YDLAKAEILNI+NL P TPVE+FP+IE  D RMG+   + + E   MVE V
Sbjct: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120

Query: 121 FPAPQS--TSEVAPKECKEAEAMEKEEGVGGADEETMVTT 156
           FP PQ+  T EV PKE  EAEAME +EG G ADEE M TT
Sbjct: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 160

[Close]
BLAST of Cp4.1LG17g01630 vs. TrEMBL
Match: A0A0B2Q8H9_GLYSO (DNA-directed RNA polymerase III subunit RPC9 OS=Glycine soja GN=glysoja_017992 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.2e-38
Identity = 85/144 (59.03%), Postives = 108/144 (75.00%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAI 60
           MKILE NAG LTNFEVLDFLR+KGA+KDPTRV+AKV  SEYKVYDYL  T AS QTRE+I
Sbjct: 38  MKILEGNAGALTNFEVLDFLRAKGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESI 97

Query: 61  LEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTEMVEQVFPA 120
            EF+   K++DLAKAE+LNI+N+GP   VE++PI+EESD R GD+G+ E+ E+V++  P 
Sbjct: 98  NEFLTSVKQHDLAKAEVLNILNIGPAAEVELYPILEESDERFGDEGVTEIVELVKKTLPL 157

Query: 121 P-QSTSEVAPKECKEAEAMEKEEG 144
           P     E   K  +E   ++ E+G
Sbjct: 158 PLNMKKEEITKGDEETATLKNEKG 181

[Close]
BLAST of Cp4.1LG17g01630 vs. TrEMBL
Match: K7LRI2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G217000 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 8.1e-38
Identity = 85/144 (59.03%), Postives = 108/144 (75.00%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAI 60
           MKILE NAG LTNFEVLDFLR+KGA+KDPTRV+AKV  SEYKVYDYL  T AS QTRE+I
Sbjct: 1   MKILEGNAGALTNFEVLDFLRAKGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESI 60

Query: 61  LEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTEMVEQVFPA 120
            EF+   K++DLAKAE+LNI+N+GP   VE++PI+EESD R GD+G+ E+ E+V++  P 
Sbjct: 61  NEFLRSVKQHDLAKAEVLNILNIGPAAEVELYPILEESDERFGDEGVTEIVELVKKTLPL 120

Query: 121 P-QSTSEVAPKECKEAEAMEKEEG 144
           P     E   K  +E   ++ E+G
Sbjct: 121 PLNMKKEEITKGDEETATLKNEKG 144

[Close]
BLAST of Cp4.1LG17g01630 vs. TrEMBL
Match: C6T2I7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 8.1e-38
Identity = 85/144 (59.03%), Postives = 108/144 (75.00%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAI 60
           MKILE NAG LTNFEVLDFLR+KGA+KDPTRV+AKV  SEYKVYDYL  T AS QTRE+I
Sbjct: 1   MKILEGNAGALTNFEVLDFLRAKGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESI 60

Query: 61  LEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTEMVEQVFPA 120
            EF+   K++DLAKAE+LNI+N+GP   VE++PI+EESD R GD+G+ E+ E+V++  P 
Sbjct: 61  NEFLRSVKQHDLAKAEVLNILNIGPAAEVELYPILEESDERFGDEGVTEIVELVKKALPL 120

Query: 121 P-QSTSEVAPKECKEAEAMEKEEG 144
           P     E   K  +E   ++ E+G
Sbjct: 121 PLNMKKEEITKGDEETATLKNEKG 144

[Close]
BLAST of Cp4.1LG17g01630 vs. TrEMBL
Match: I3SAG6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.4e-36
Identity = 85/152 (55.92%), Postives = 109/152 (71.71%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAI 60
           MKILEANAG LTNFEVLDFLR KGA+KDPTRV+AKV  SEYKVYDYL  T AS QTRE+I
Sbjct: 1   MKILEANAGALTNFEVLDFLRGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESI 60

Query: 61  LEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTEMVEQVFPA 120
            EF+   KK+DLAKAE+LNI+N+ P   VE+FPIIEE + R  D+ + E+ E+V++  PA
Sbjct: 61  NEFMASVKKHDLAKAEVLNIINIRPAAAVEMFPIIEECESRFPDEEVTEIVELVKKTLPA 120

Query: 121 PQSTSEVA--PKECKEAEAMEKEEGVGGADEE 151
           P +   V   P+  +E   +E E     ++++
Sbjct: 121 PPAKKNVVENPEGNEETATLEHENDTKMSEDQ 152

[Close]
BLAST of Cp4.1LG17g01630 vs. TAIR10
Match: AT5G62950.1 (AT5G62950.1 RNA polymerase II, Rpb4, core protein)

HSP 1 Score: 135.2 bits (339), Expect = 3.5e-32
Identity = 81/143 (56.64%), Postives = 101/143 (70.63%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAI 60
           MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKVYDYL +T AS QTRE+I
Sbjct: 1   MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61  LEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGD-DGIQELTEMVEQVFP 120
            +F DK K + LAKAEILNI+NL P + VE+ PIIE  D R  D DGI EL   V+ + P
Sbjct: 61  NKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDREIDTDGILEL---VKDLLP 120

Query: 121 APQSTSEVAPKECKEAEAMEKEE 143
              +T+  +PK+  E E    E+
Sbjct: 121 PLPTTA--SPKDDDEEETENGEQ 138

[Close]
BLAST of Cp4.1LG17g01630 vs. TAIR10
Match: AT3G28956.1 (AT3G28956.1 RNA polymerase II, Rpb4, core protein)

HSP 1 Score: 127.1 bits (318), Expect = 9.4e-30
Identity = 78/140 (55.71%), Postives = 98/140 (70.00%), Query Frame = 1 

Query: 4   LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAILEF 63
           ++ANAG LTNFE+LDFL S+GA+KD TRV+A +  SEYKVYDYL +T AS QTRE++ + 
Sbjct: 1   MKANAGALTNFELLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVNKS 60

Query: 64  VDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGD-DGIQELTEMVEQVFPAPQ 123
            DK K + LAKAEILNI+NL P + VE+ PIIE  D R  D DGI EL   V+ + P P 
Sbjct: 61  ADKCKDFKLAKAEILNIINLWPSSIVELLPIIENLDDREIDTDGILEL---VKDLLP-PL 120

Query: 124 STSEVAPKECKEAEAMEKEE 143
            T+E +PK+  E E  E  E
Sbjct: 121 PTAE-SPKDNDEEEETENGE 135

[Close]
BLAST of Cp4.1LG17g01630 vs. NCBI nr
Match: gi|449455302|ref|XP_004145392.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 2.6e-53
Identity = 116/160 (72.50%), Postives = 129/160 (80.62%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV+PSEYKV+DYLNQT A  QTREAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60

Query: 61  LEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTE---MVEQV 120
           + F +KSK+YDLAKAEILNI+NL P TPVE+FP+IE  D RMG+   + + E   MVE V
Sbjct: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120

Query: 121 FPAPQS--TSEVAPKECKEAEAMEKEEGVGGADEETMVTT 156
           FP PQ+  T EV PKE  EAEAME +EG G ADEE M TT
Sbjct: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 160

[Close]
BLAST of Cp4.1LG17g01630 vs. NCBI nr
Match: gi|659096842|ref|XP_008449317.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Cucumis melo])

HSP 1 Score: 216.5 bits (550), Expect = 3.4e-53
Identity = 115/160 (71.88%), Postives = 131/160 (81.88%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV+PSEYKV+DYLNQTPA  QTREA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  LEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDG---IQELTEMVEQV 120
           + FV+KSK+YDLAKAEILNI+NL PITPVE+FPIIE  DVRMG++    ++E+  MVE V
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120

Query: 121 FPAP--QSTSEVAPKECKEAEAMEKEEGVGGADEETMVTT 156
           FP P  Q T E  P E  EAE ME++EG G A EE + TT
Sbjct: 121 FPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]
BLAST of Cp4.1LG17g01630 vs. NCBI nr
Match: gi|734366005|gb|KHN17941.1| (DNA-directed RNA polymerase III subunit RPC9 [Glycine soja])

HSP 1 Score: 165.2 bits (417), Expect = 8.9e-38
Identity = 85/144 (59.03%), Postives = 108/144 (75.00%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAI 60
           MKILE NAG LTNFEVLDFLR+KGA+KDPTRV+AKV  SEYKVYDYL  T AS QTRE+I
Sbjct: 38  MKILEGNAGALTNFEVLDFLRAKGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESI 97

Query: 61  LEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTEMVEQVFPA 120
            EF+   K++DLAKAE+LNI+N+GP   VE++PI+EESD R GD+G+ E+ E+V++  P 
Sbjct: 98  NEFLTSVKQHDLAKAEVLNILNIGPAAEVELYPILEESDERFGDEGVTEIVELVKKTLPL 157

Query: 121 P-QSTSEVAPKECKEAEAMEKEEG 144
           P     E   K  +E   ++ E+G
Sbjct: 158 PLNMKKEEITKGDEETATLKNEKG 181

[Close]
BLAST of Cp4.1LG17g01630 vs. NCBI nr
Match: gi|351721416|ref|NP_001238744.1| (uncharacterized protein LOC100526847 [Glycine max])

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 85/144 (59.03%), Postives = 108/144 (75.00%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAI 60
           MKILE NAG LTNFEVLDFLR+KGA+KDPTRV+AKV  SEYKVYDYL  T AS QTRE+I
Sbjct: 1   MKILEGNAGALTNFEVLDFLRAKGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESI 60

Query: 61  LEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTEMVEQVFPA 120
            EF+   K++DLAKAE+LNI+N+GP   VE++PI+EESD R GD+G+ E+ E+V++  P 
Sbjct: 61  NEFLRSVKQHDLAKAEVLNILNIGPAAEVELYPILEESDERFGDEGVTEIVELVKKALPL 120

Query: 121 P-QSTSEVAPKECKEAEAMEKEEG 144
           P     E   K  +E   ++ E+G
Sbjct: 121 PLNMKKEEITKGDEETATLKNEKG 144

[Close]
BLAST of Cp4.1LG17g01630 vs. NCBI nr
Match: gi|947082163|gb|KRH30952.1| (hypothetical protein GLYMA_11G217000 [Glycine max])

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 85/144 (59.03%), Postives = 108/144 (75.00%), Query Frame = 1 

Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVVPSEYKVYDYLNQTPASYQTREAI 60
           MKILE NAG LTNFEVLDFLR+KGA+KDPTRV+AKV  SEYKVYDYL  T AS QTRE+I
Sbjct: 1   MKILEGNAGALTNFEVLDFLRAKGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESI 60

Query: 61  LEFVDKSKKYDLAKAEILNIVNLGPITPVEIFPIIEESDVRMGDDGIQELTEMVEQVFPA 120
            EF+   K++DLAKAE+LNI+N+GP   VE++PI+EESD R GD+G+ E+ E+V++  P 
Sbjct: 61  NEFLRSVKQHDLAKAEVLNILNIGPAAEVELYPILEESDERFGDEGVTEIVELVKKTLPL 120

Query: 121 P-QSTSEVAPKECKEAEAMEKEEG 144
           P     E   K  +E   ++ E+G
Sbjct: 121 PLNMKKEEITKGDEETATLKNEKG 144

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g01630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPC9_CAVPO2.1e-1031.51DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus GN=CRCP PE=2 SV=... [more]
RPC9_BOVIN2.7e-1028.38DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus GN=CRCP PE=2 SV=1[more]
RPC9_HUMAN6.0e-1028.38DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens GN=CRCP PE=1 SV=1[more]
RPC9_RAT7.8e-1029.73DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus GN=Crcp PE=2 S... [more]
RPC9_MOUSE1.3e-0929.73DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus GN=Crcp PE=2 SV=1[more]
BLAST of Cp4.1LG17g01630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIC1_CUCSA1.8e-5372.50Uncharacterized protein OS=Cucumis sativus GN=Csa_2G222080 PE=4 SV=1[more]
A0A0B2Q8H9_GLYSO6.2e-3859.03DNA-directed RNA polymerase III subunit RPC9 OS=Glycine soja GN=glysoja_017992 P... [more]
K7LRI2_SOYBN8.1e-3859.03Uncharacterized protein OS=Glycine max GN=GLYMA_11G217000 PE=4 SV=1[more]
C6T2I7_SOYBN8.1e-3859.03Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
I3SAG6_LOTJA4.4e-3655.92Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of Cp4.1LG17g01630 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G62950.13.5e-3256.64 RNA polymerase II, Rpb4, core protein[more]
AT3G28956.19.4e-3055.71 RNA polymerase II, Rpb4, core protein[more]
BLAST of Cp4.1LG17g01630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455302|ref|XP_004145392.1|2.6e-5372.50PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Cucumis sativus][more]
gi|659096842|ref|XP_008449317.1|3.4e-5371.88PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Cucumis melo][more]
gi|734366005|gb|KHN17941.1|8.9e-3859.03DNA-directed RNA polymerase III subunit RPC9 [Glycine soja][more]
gi|351721416|ref|NP_001238744.1|1.2e-3759.03uncharacterized protein LOC100526847 [Glycine max][more]
gi|947082163|gb|KRH30952.1|1.2e-3759.03hypothetical protein GLYMA_11G217000 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0044237cellular metabolic process
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0003899DNA-directed RNA polymerase activity
Vocabulary: INTERPRO
TermDefinition
IPR010997HRDC-like_sf
IPR006590RNA_pol_Rpb4/RPC9_core
IPR005574RPB4/RPC9
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0044237 cellular metabolic process
biological_process GO:0006384 transcription initiation from RNA polymerase III promoter
cellular_component GO:0005730 nucleolus
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g01630.1Cp4.1LG17g01630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005574RNA polymerase II, Rpb4PFAMPF03874RNA_pol_Rpb4coord: 11..117
score: 1.2
IPR006590RNA polymerase II, Rpb4, coreSMARTSM00657rpol4neu2coord: 1..121
score: 1.4
IPR010997HRDC-likeunknownSSF47819HRDC-likecoord: 4..119
score: 6.98
NoneNo IPR availablePANTHERPTHR15561CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEINcoord: 2..152
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g01630CmaCh17G002100Cucurbita maxima (Rimu)cmacpeB388
Cp4.1LG17g01630CmoCh17G002030Cucurbita moschata (Rifu)cmocpeB351
Cp4.1LG17g01630Cla007529Watermelon (97103) v1cpewmB334
Cp4.1LG17g01630Csa2G222080Cucumber (Chinese Long) v2cpecuB306
Cp4.1LG17g01630ClCG06G006470Watermelon (Charleston Gray)cpewcgB294
Cp4.1LG17g01630CSPI02G10980Wild cucumber (PI 183967)cpecpiB306
Cp4.1LG17g01630MELO3C014285.2Melon (DHL92) v3.6.1cpemedB363
Cp4.1LG17g01630CsaV3_2G013430Cucumber (Chinese Long) v3cpecucB0377
Cp4.1LG17g01630Bhi12G001491Wax gourdcpewgoB0388
Cp4.1LG17g01630Carg15885Silver-seed gourdcarcpeB0453
Cp4.1LG17g01630Carg10045Silver-seed gourdcarcpeB0323
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g01630Cp4.1LG12g01790Cucurbita pepo (Zucchini)cpecpeB169
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g01630Cucurbita pepo (Zucchini)cpecpeB259
Cp4.1LG17g01630Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG17g01630Cucurbita pepo (Zucchini)cpecpeB340
Cp4.1LG17g01630Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG17g01630Cucumber (Gy14) v1cgycpeB0676
Cp4.1LG17g01630Cucumber (Gy14) v1cgycpeB1024
Cp4.1LG17g01630Cucurbita maxima (Rimu)cmacpeB266
Cp4.1LG17g01630Cucurbita maxima (Rimu)cmacpeB386
Cp4.1LG17g01630Cucurbita maxima (Rimu)cmacpeB631
Cp4.1LG17g01630Cucurbita maxima (Rimu)cmacpeB824
Cp4.1LG17g01630Cucurbita maxima (Rimu)cmacpeB916
Cp4.1LG17g01630Cucurbita moschata (Rifu)cmocpeB230
Cp4.1LG17g01630Cucurbita moschata (Rifu)cmocpeB350
Cp4.1LG17g01630Cucurbita moschata (Rifu)cmocpeB777
Cp4.1LG17g01630Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g01630Wild cucumber (PI 183967)cpecpiB312
Cp4.1LG17g01630Wild cucumber (PI 183967)cpecpiB349
Cp4.1LG17g01630Cucumber (Chinese Long) v2cpecuB310
Cp4.1LG17g01630Cucumber (Chinese Long) v2cpecuB348
Cp4.1LG17g01630Bottle gourd (USVL1VR-Ls)cpelsiB254
Cp4.1LG17g01630Bottle gourd (USVL1VR-Ls)cpelsiB265
Cp4.1LG17g01630Bottle gourd (USVL1VR-Ls)cpelsiB267
Cp4.1LG17g01630Bottle gourd (USVL1VR-Ls)cpelsiB269
Cp4.1LG17g01630Watermelon (Charleston Gray)cpewcgB282
Cp4.1LG17g01630Watermelon (Charleston Gray)cpewcgB293
Cp4.1LG17g01630Watermelon (97103) v1cpewmB314
Cp4.1LG17g01630Watermelon (97103) v1cpewmB331
Cp4.1LG17g01630Watermelon (97103) v1cpewmB326
Cp4.1LG17g01630Melon (DHL92) v3.5.1cpemeB311
Cp4.1LG17g01630Melon (DHL92) v3.5.1cpemeB316
Cp4.1LG17g01630Cucumber (Gy14) v2cgybcpeB203
Cp4.1LG17g01630Cucumber (Gy14) v2cgybcpeB354
Cp4.1LG17g01630Cucumber (Gy14) v2cgybcpeB936
Cp4.1LG17g01630Melon (DHL92) v3.6.1cpemedB371
Cp4.1LG17g01630Silver-seed gourdcarcpeB1058
Cp4.1LG17g01630Silver-seed gourdcarcpeB1059
Cp4.1LG17g01630Silver-seed gourdcarcpeB1330
Cp4.1LG17g01630Cucumber (Chinese Long) v3cpecucB0378
Cp4.1LG17g01630Cucumber (Chinese Long) v3cpecucB0385
Cp4.1LG17g01630Cucumber (Chinese Long) v3cpecucB0427
Cp4.1LG17g01630Wax gourdcpewgoB0405
Cp4.1LG17g01630Wax gourdcpewgoB0401