Cp4.1LG17g00350 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g00350
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc knuckle family protein
LocationCp4.1LG17 : 388969 .. 389745 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCTGCTGCTGAAAGGATTAAGGCCGCTGCTCTTAGTGCAGCAAAGGGGCTCAGTCGTGCTCAGGCTGAACGAGCAGCTGCGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAAGCAGTCAGATTGGGTGAAAGAAAGGACCTTAAGGGCTCTATGTCTTGCGCTGGTGGAGGTGCTGCTGCACAGTGCCAGAAATGTTATCAGGTGGGGCATTGGACGTATGAATGCAAAAACGAACGAGTTTACATATCTCGGCCATCTCGAACTCAACAACTTAAGAATCCCAAGTTGAGGATGAAGATGGCAGCCTCTTATGATCTGGACAACCCGGATTCTGATATGAAGAACGAGAAGAAGAAGACTGAGAAGCATTCGAAGAAGAAAAGCAAAAGAAAGCATGGGCGGTCCAGTAGCGATAGTGAGGCCTCTGCTTTAGAGACTGAAAGTGGGTCATCATCAGTTTCTGGAAGCAGTTCAGATTACAGTTCTTCATCTGAATCTGAATCAGAGAGGAGTCGGAGAAGGAGAAAGAAGCAGAAAAGGGAGAGAAGAAAGAGGAGGTACAGTTCATCTTCTGAATCTTCTGATTCTGACTCCGGTTCTGAATCAGAATCTGATTCCGATGATGAACGTAGTCGGAGGAAGAGCCGAAGGCACAGCAGAAGGCGCTAG

mRNA sequence

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCTGCTGCTGAAAGGATTAAGGCCGCTGCTCTTAGTGCAGCAAAGGGGCTCAGTCGTGCTCAGGCTGAACGAGCAGCTGCGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAAGCAGTCAGATTGGGTGAAAGAAAGGACCTTAAGGGCTCTATGTCTTGCGCTGGTGGAGGTGCTGCTGCACAGTGCCAGAAATGTTATCAGGTGGGGCATTGGACGTATGAATGCAAAAACGAACGAGTTTACATATCTCGGCCATCTCGAACTCAACAACTTAAGAATCCCAAGTTGAGGATGAAGATGGCAGCCTCTTATGATCTGGACAACCCGGATTCTGATATGAAGAACGAGAAGAAGAAGACTGAGAAGCATTCGAAGAAGAAAAGCAAAAGAAAGCATGGGCGGTCCAGTAGCGATAGTGAGGCCTCTGCTTTAGAGACTGAAAGTGGGTCATCATCAGTTTCTGGAAGCAGTTCAGATTACAGTTCTTCATCTGAATCTGAATCAGAGAGGAGTCGGAGAAGGAGAAAGAAGCAGAAAAGGGAGAGAAGAAAGAGGAGGTACAGTTCATCTTCTGAATCTTCTGATTCTGACTCCGGTTCTGAATCAGAATCTGATTCCGATGATGAACGTAGTCGGAGGAAGAGCCGAAGGCACAGCAGAAGGCGCTAG

Coding sequence (CDS)

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCTGCTGCTGAAAGGATTAAGGCCGCTGCTCTTAGTGCAGCAAAGGGGCTCAGTCGTGCTCAGGCTGAACGAGCAGCTGCGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAAGCAGTCAGATTGGGTGAAAGAAAGGACCTTAAGGGCTCTATGTCTTGCGCTGGTGGAGGTGCTGCTGCACAGTGCCAGAAATGTTATCAGGTGGGGCATTGGACGTATGAATGCAAAAACGAACGAGTTTACATATCTCGGCCATCTCGAACTCAACAACTTAAGAATCCCAAGTTGAGGATGAAGATGGCAGCCTCTTATGATCTGGACAACCCGGATTCTGATATGAAGAACGAGAAGAAGAAGACTGAGAAGCATTCGAAGAAGAAAAGCAAAAGAAAGCATGGGCGGTCCAGTAGCGATAGTGAGGCCTCTGCTTTAGAGACTGAAAGTGGGTCATCATCAGTTTCTGGAAGCAGTTCAGATTACAGTTCTTCATCTGAATCTGAATCAGAGAGGAGTCGGAGAAGGAGAAAGAAGCAGAAAAGGGAGAGAAGAAAGAGGAGGTACAGTTCATCTTCTGAATCTTCTGATTCTGACTCCGGTTCTGAATCAGAATCTGATTCCGATGATGAACGTAGTCGGAGGAAGAGCCGAAGGCACAGCAGAAGGCGCTAG

Protein sequence

MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKHGRSSSDSEASALETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESESDSDDERSRRKSRRHSRRR
Homology
[Close]
BLAST of Cp4.1LG17g00350 vs. Swiss-Prot
Match: ZCH10_RAT (Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus GN=Zcchc10 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-06
Identity = 64/165 (38.79%), Postives = 83/165 (50.30%), Query Frame = 1 

Query: 97  QCQKCYQVGHWTYECKNERVYISRPSRTQQLKNP-KLRMKMAASYDLDNPDSDMKNEKKK 156
           +CQKC + GHWTYECK +R Y+ RPSRT +LK   K +        +   +++ K +KK+
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELKKALKEKENRLLQQSMGETNTERKTKKKR 81

Query: 157 TEKH--SKKKSKRKHGRSSSDSEASALETE-----SGSSSVSGSSSDYSSSSESESERSR 216
             K   S   S      SSS+SE SA  +       GS S S SSS YSSSS S S  S 
Sbjct: 82  RPKSVTSTSSSDSSASESSSESETSASSSSEDSDADGSLSSSSSSSAYSSSSSSSSSSSS 141

Query: 217 RRRKKQKRERRKRRYSSSSESSDSDSGSESESDSDDERSRRKSRR 254
                          S S  SS S S S SES SDDE  +++ ++
Sbjct: 142 SS-------------SDSDSSSSSSSSSSSESSSDDEPPKKRKKK 173

[Close]
BLAST of Cp4.1LG17g00350 vs. TrEMBL
Match: A0A0A0LJ33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249870 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 4.5e-94
Identity = 229/268 (85.45%), Postives = 241/268 (89.93%), Query Frame = 1 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKD+KGSMS AGG AAAQCQKCYQ+GHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGG-AAAQCQKCYQMGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKH---GRSSSDSEA 180
           PSRTQQLKNPKLRMKM  S +LDNPD     E+KK +KHSKKKSKRKH    +S+SDSEA
Sbjct: 121 PSRTQQLKNPKLRMKMEVSLELDNPDP---GEEKKPKKHSKKKSKRKHRSNAKSNSDSEA 180

Query: 181 SALETESGSSSVSGS-------SSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESS 240
           S  ET+SGSSSV+ S       SSDYSSSSESESERSRRRRKKQKR RRKRRYSSSS+SS
Sbjct: 181 SVFETDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDSDDERSRRKSRRHSRRR 259
           DSDS SESESDSD+ERSRRKSRRHSR+R
Sbjct: 241 DSDSRSESESDSDNERSRRKSRRHSRKR 264

[Close]
BLAST of Cp4.1LG17g00350 vs. TrEMBL
Match: A0A061EQS1_THECC (Zinc knuckle family protein isoform 1 OS=Theobroma cacao GN=TCM_021337 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.1e-79
Identity = 207/268 (77.24%), Postives = 228/268 (85.07%), Query Frame = 1 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEK+QAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKTQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAV+LGERKD K SMS  G   A+QCQKC+Q GHWTYECKNERVY+SR
Sbjct: 61  EAKRQMYLMSTEKAVKLGERKD-KTSMSTMG---ASQCQKCFQAGHWTYECKNERVYMSR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKH---GRSSSDSEA 180
           PSRTQQLKNPKLRMK++ SYDLDNP  D+K+EK   E +  KKSKRKH     S SDSEA
Sbjct: 121 PSRTQQLKNPKLRMKLSISYDLDNP--DIKDEK---EDNRSKKSKRKHRSDSDSGSDSEA 180

Query: 181 SALETESGSSSVSG-------SSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESS 240
           S  ET+SG+SSV+G       SS+DYSSSS+SE ER RRRRKK++++ R+RRYSSSSESS
Sbjct: 181 SVFETDSGASSVTGSDSSSAESSTDYSSSSDSEEERRRRRRKKKQKKGRRRRYSSSSESS 240

Query: 241 DSDSGSESESDSDDERSRRKSRRHSRRR 259
           DSDS   S+SDSDD  SRRKSRRHSRRR
Sbjct: 241 DSDSA--SDSDSDDRSSRRKSRRHSRRR 257

[Close]
BLAST of Cp4.1LG17g00350 vs. TrEMBL
Match: W9RGK6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026844 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.4e-79
Identity = 202/265 (76.23%), Postives = 220/265 (83.02%), Query Frame = 1 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEK+QAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKAQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKDLK SMS  GG AA+QCQKC+Q GHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSTVGG-AASQCQKCFQPGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKHGRSSSDSEASAL 180
           PSRTQQLKNPKL+MK++ SYDLDNPD+    EK K  K SK+K  R    S SDSEAS  
Sbjct: 121 PSRTQQLKNPKLKMKVSISYDLDNPDAKEDEEKSKQSKKSKRKH-RSDSDSGSDSEASVF 180

Query: 181 ETESGSSSVSGS-------SSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSD 240
           ET+SGSSS   S       SSDYSSSS+SE ER R ++KK+K   R+RRY+SSS+ SDSD
Sbjct: 181 ETDSGSSSAKASDYSSEESSSDYSSSSDSEEERRRWKKKKKKSRGRRRRYNSSSDFSDSD 240

Query: 241 SGSESESDSDDERSRRKSRRHSRRR 259
           S   S+SDSDD  SRRKSRRHS+RR
Sbjct: 241 SA--SDSDSDDRSSRRKSRRHSKRR 261

[Close]
BLAST of Cp4.1LG17g00350 vs. TrEMBL
Match: F6H735_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01180 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.4e-79
Identity = 206/268 (76.87%), Postives = 224/268 (83.58%), Query Frame = 1 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEK+QAAAERIKAAAL+AAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKAQAAAERIKAAALTAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAV LGERKDLK +MS   GG ++QCQKC+Q GHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVILGERKDLKTTMSTI-GGTSSQCQKCFQTGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKH---GRSSSDSEA 180
           PSRTQQLKNPKLRMK++ SYDLDNPD       +K +    KKSKRKH     S SDSEA
Sbjct: 121 PSRTQQLKNPKLRMKLSISYDLDNPDIKKNEAAEKVD----KKSKRKHQSDSDSGSDSEA 180

Query: 181 SALETESGSSSV------SGSSSDYSSSSESESERSRRRRKKQKRERRK-RRYSSSSESS 240
           S  ET+S SSSV      SGSSS YSSSS+SE ER RR++KKQK+ RR+ RRYSSSSESS
Sbjct: 181 SVFETDSESSSVTGSEDSSGSSSGYSSSSDSEEERRRRKKKKQKKGRRRHRRYSSSSESS 240

Query: 241 DSDSGSESESDSDDERSRRKSRRHSRRR 259
           DSDSG  SESDSD+  SRR+SRRHSRRR
Sbjct: 241 DSDSG--SESDSDERSSRRRSRRHSRRR 261

[Close]
BLAST of Cp4.1LG17g00350 vs. TrEMBL
Match: M5XD61_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010068mg PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 4.1e-79
Identity = 207/271 (76.38%), Postives = 235/271 (86.72%), Query Frame = 1 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEK++AAAERIKAAAL+AAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKAEAAAERIKAAALTAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKDLK ++S   G AA+QCQKCYQ GHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKSNVSTIAG-AASQCQKCYQPGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKHGRSS---SDSEA 180
           PSRTQQLKNPKL+MK++ SYDLDNPD+   N+++K+EK SKK SKRKH  +S   SDSEA
Sbjct: 121 PSRTQQLKNPKLKMKVSESYDLDNPDNI--NKEEKSEKQSKK-SKRKHRATSDSGSDSEA 180

Query: 181 SALETE-SGSSSVSGS-------SSDYSSSSESESERSRRRRKKQKRE--RRKRRYSSSS 240
           S  +T+ SG+SSV+GS       SSDYSSSS+SE ER R RRKK+K++  RR+RRYSSSS
Sbjct: 181 SVFDTDDSGASSVTGSDYSSEESSSDYSSSSDSEEERKRLRRKKKKQKMGRRRRRYSSSS 240

Query: 241 ESSDSDSGSESESDSDDERSRRKSRRHSRRR 259
           ESS+++S SE  SDSDD RSRRKSRRHSR+R
Sbjct: 241 ESSETESASE--SDSDDRRSRRKSRRHSRKR 265

[Close]
BLAST of Cp4.1LG17g00350 vs. TAIR10
Match: AT5G49400.1 (AT5G49400.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 254.2 bits (648), Expect = 8.5e-68
Identity = 185/277 (66.79%), Postives = 210/277 (75.81%), Query Frame = 1 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MS+ K+EKSQ AA+RIKAA L+AAKGLSR QAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSNSKDEKSQDAADRIKAATLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAG--GGAAAQCQKCYQVGHWTYECKNERVYI 120
           E KRQMYLMSTEKAVRLGERKD   S S  G    AA+QCQKC+Q GHWTYECKNERVYI
Sbjct: 61  ELKRQMYLMSTEKAVRLGERKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYI 120

Query: 121 SRPSRTQQLKNPKLRMKMAASYDLDNPDSDMKNE-------KKKTEKHSKKKSKRKH--- 180
           SRPSRTQQLKNPKLR K +   DLD  D D + E       K + EK S KKSKRKH   
Sbjct: 121 SRPSRTQQLKNPKLRTKPSVD-DLDGSDDDDEEERPDATNGKAEVEKRS-KKSKRKHRSK 180

Query: 181 GRSSSDSEASALETESGSSSVSGSSSDYSSSSESESERSRRR-------RKKQKRERRKR 240
             S SDSEAS  ET+S  SS   SSS+YSSSS+SE ER RRR       ++KQ++ERR+R
Sbjct: 181 SDSESDSEASVFETDSDGSS-GESSSEYSSSSDSEDERRRRRKAKKSKKKQKQRKERRRR 240

Query: 241 RYSSSSESSDSDSGSESESDSDDERSRRKSRRHSRRR 259
             SSSSESS+S+S S+S+SD D  R ++KS+RHS +R
Sbjct: 241 YSSSSSESSESESASDSDSDEDRSRRKKKSKRHSNKR 274

[Close]
BLAST of Cp4.1LG17g00350 vs. NCBI nr
Match: gi|778669460|ref|XP_011649249.1| (PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis sativus])

HSP 1 Score: 352.4 bits (903), Expect = 6.5e-94
Identity = 229/268 (85.45%), Postives = 241/268 (89.93%), Query Frame = 1 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKD+KGSMS AGG AAAQCQKCYQ+GHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGG-AAAQCQKCYQMGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKH---GRSSSDSEA 180
           PSRTQQLKNPKLRMKM  S +LDNPD     E+KK +KHSKKKSKRKH    +S+SDSEA
Sbjct: 121 PSRTQQLKNPKLRMKMEVSLELDNPDP---GEEKKPKKHSKKKSKRKHRSNAKSNSDSEA 180

Query: 181 SALETESGSSSVS-------GSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESS 240
           S  ET+SGSSSV+        SSSDYSSSSESESERSRRRRKKQKR RRKRRYSSSS+SS
Sbjct: 181 SVFETDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDSDDERSRRKSRRHSRRR 259
           DSDS SESESDSD+ERSRRKSRRHSR+R
Sbjct: 241 DSDSRSESESDSDNERSRRKSRRHSRKR 264

[Close]
BLAST of Cp4.1LG17g00350 vs. NCBI nr
Match: gi|659122142|ref|XP_008460989.1| (PREDICTED: zinc finger CCHC domain-containing protein 10 isoform X2 [Cucumis melo])

HSP 1 Score: 348.6 bits (893), Expect = 9.4e-93
Identity = 227/268 (84.70%), Postives = 238/268 (88.81%), Query Frame = 1 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKD+KGSMS AGG AAAQCQKCYQ+GHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGG-AAAQCQKCYQMGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKH---GRSSSDSEA 180
           PSRTQQLKNPKLRMKM  S +LDNPD     E++K +KHSK KSKRKH    +S SDSEA
Sbjct: 121 PSRTQQLKNPKLRMKMEVSLELDNPDP---GEEEKPKKHSKNKSKRKHRSNAKSDSDSEA 180

Query: 181 SALETESGSSSVSGS-------SSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESS 240
           S  ET+SGSSSV+ S       SSDYSSSSESE ERSRRRRKKQKR RRKRRYSSSS+SS
Sbjct: 181 SVFETDSGSSSVTESDDSSEESSSDYSSSSESECERSRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDSDDERSRRKSRRHSRRR 259
           DSDS SESESDSD+ERSRRKSRRHSRRR
Sbjct: 241 DSDSRSESESDSDNERSRRKSRRHSRRR 264

[Close]
BLAST of Cp4.1LG17g00350 vs. NCBI nr
Match: gi|659122140|ref|XP_008460988.1| (PREDICTED: suppressor protein SRP40 isoform X1 [Cucumis melo])

HSP 1 Score: 348.6 bits (893), Expect = 9.4e-93
Identity = 227/268 (84.70%), Postives = 238/268 (88.81%), Query Frame = 1 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 66  MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 125

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKD+KGSMS AGG AAAQCQKCYQ+GHWTYECKNERVYISR
Sbjct: 126 EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGG-AAAQCQKCYQMGHWTYECKNERVYISR 185

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKH---GRSSSDSEA 180
           PSRTQQLKNPKLRMKM  S +LDNPD     E++K +KHSK KSKRKH    +S SDSEA
Sbjct: 186 PSRTQQLKNPKLRMKMEVSLELDNPDP---GEEEKPKKHSKNKSKRKHRSNAKSDSDSEA 245

Query: 181 SALETESGSSSVSGS-------SSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESS 240
           S  ET+SGSSSV+ S       SSDYSSSSESE ERSRRRRKKQKR RRKRRYSSSS+SS
Sbjct: 246 SVFETDSGSSSVTESDDSSEESSSDYSSSSESECERSRRRRKKQKRGRRKRRYSSSSDSS 305

Query: 241 DSDSGSESESDSDDERSRRKSRRHSRRR 259
           DSDS SESESDSD+ERSRRKSRRHSRRR
Sbjct: 306 DSDSRSESESDSDNERSRRKSRRHSRRR 329

[Close]
BLAST of Cp4.1LG17g00350 vs. NCBI nr
Match: gi|694388478|ref|XP_009369944.1| (PREDICTED: zinc finger CCHC domain-containing protein 10 [Pyrus x bretschneideri])

HSP 1 Score: 304.7 bits (779), Expect = 1.6e-79
Identity = 206/268 (76.87%), Postives = 227/268 (84.70%), Query Frame = 1 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEK+QAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKAQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKDLK ++S   GGAA+QCQKCYQ GHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKSNVSTV-GGAASQCQKCYQPGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKH---GRSSSDSEA 180
           PSRTQQLKNPKL+MK+  SYDLDNP  ++K EK   E+   KKSKRKH     S SDSEA
Sbjct: 121 PSRTQQLKNPKLKMKVEISYDLDNP--EIKEEK---EEKQSKKSKRKHRSASDSGSDSEA 180

Query: 181 SALETESGSSSVSG-------SSSDYSSSSESESE-RSRRRRKKQKRERRKRRYSSSSES 240
           S  ET+SG+SSV+G       SSSDYSSS++SE E R RR++KKQK  RR+RRYSSSSES
Sbjct: 181 SVFETDSGASSVTGSEYSSEESSSDYSSSTDSEEERRHRRKKKKQKMARRRRRYSSSSES 240

Query: 241 SDSDSGSESESDSDDERSRRKSRRHSRR 258
           +DS+S   SESDSDD RSR+KS RHSR+
Sbjct: 241 TDSESA--SESDSDDRRSRKKSTRHSRK 260

[Close]
BLAST of Cp4.1LG17g00350 vs. NCBI nr
Match: gi|590661752|ref|XP_007035760.1| (Zinc knuckle family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 304.7 bits (779), Expect = 1.6e-79
Identity = 207/268 (77.24%), Postives = 228/268 (85.07%), Query Frame = 1 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEK+QAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKTQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAV+LGERKD K SMS  G   A+QCQKC+Q GHWTYECKNERVY+SR
Sbjct: 61  EAKRQMYLMSTEKAVKLGERKD-KTSMSTMG---ASQCQKCFQAGHWTYECKNERVYMSR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKH---GRSSSDSEA 180
           PSRTQQLKNPKLRMK++ SYDLDNP  D+K+EK   E +  KKSKRKH     S SDSEA
Sbjct: 121 PSRTQQLKNPKLRMKLSISYDLDNP--DIKDEK---EDNRSKKSKRKHRSDSDSGSDSEA 180

Query: 181 SALETESGSSSVSG-------SSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESS 240
           S  ET+SG+SSV+G       SS+DYSSSS+SE ER RRRRKK++++ R+RRYSSSSESS
Sbjct: 181 SVFETDSGASSVTGSDSSSAESSTDYSSSSDSEEERRRRRRKKKQKKGRRRRYSSSSESS 240

Query: 241 DSDSGSESESDSDDERSRRKSRRHSRRR 259
           DSDS   S+SDSDD  SRRKSRRHSRRR
Sbjct: 241 DSDSA--SDSDSDDRSSRRKSRRHSRRR 257

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g00350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ZCH10_RAT1.8e-0638.79Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus GN=Zcchc10 PE... [more]
BLAST of Cp4.1LG17g00350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ33_CUCSA4.5e-9485.45Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249870 PE=4 SV=1[more]
A0A061EQS1_THECC1.1e-7977.24Zinc knuckle family protein isoform 1 OS=Theobroma cacao GN=TCM_021337 PE=4 SV=1[more]
W9RGK6_9ROSA1.4e-7976.23Uncharacterized protein OS=Morus notabilis GN=L484_026844 PE=4 SV=1[more]
F6H735_VITVI2.4e-7976.87Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01180 PE=4 SV=... [more]
M5XD61_PRUPE4.1e-7976.38Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010068mg PE=4 SV=1[more]
BLAST of Cp4.1LG17g00350 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G49400.18.5e-6866.79 zinc knuckle (CCHC-type) family protein[more]
BLAST of Cp4.1LG17g00350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778669460|ref|XP_011649249.1|6.5e-9485.45PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis sativus][more]
gi|659122142|ref|XP_008460989.1|9.4e-9384.70PREDICTED: zinc finger CCHC domain-containing protein 10 isoform X2 [Cucumis mel... [more]
gi|659122140|ref|XP_008460988.1|9.4e-9384.70PREDICTED: suppressor protein SRP40 isoform X1 [Cucumis melo][more]
gi|694388478|ref|XP_009369944.1|1.6e-7976.87PREDICTED: zinc finger CCHC domain-containing protein 10 [Pyrus x bretschneideri... [more]
gi|590661752|ref|XP_007035760.1|1.6e-7977.24Zinc knuckle family protein isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g00350.1Cp4.1LG17g00350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 90..114
score: 7.1
NoneNo IPR availablePANTHERPTHR13491ZCCHC10 PROTEINcoord: 1..258
score: 2.7
NoneNo IPR availablePANTHERPTHR13491:SF0ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 10coord: 1..258
score: 2.7
NoneNo IPR availablePFAMPF13917zf-CCHC_3coord: 94..130
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g00350CmaCh17G003650Cucurbita maxima (Rimu)cmacpeB377
Cp4.1LG17g00350CmoCh17G003550Cucurbita moschata (Rifu)cmocpeB340
Cp4.1LG17g00350Cla009252Watermelon (97103) v1cpewmB340
Cp4.1LG17g00350ClCG06G004640Watermelon (Charleston Gray)cpewcgB297
Cp4.1LG17g00350Bhi12G001718Wax gourdcpewgoB0379
Cp4.1LG17g00350Carg05544Silver-seed gourdcarcpeB0102
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g00350Wax gourdcpewgoB0398
Cp4.1LG17g00350Cucurbita pepo (Zucchini)cpecpeB158
Cp4.1LG17g00350Cucurbita pepo (Zucchini)cpecpeB337
Cp4.1LG17g00350Cucurbita pepo (Zucchini)cpecpeB343
Cp4.1LG17g00350Cucumber (Gy14) v1cgycpeB0678
Cp4.1LG17g00350Cucurbita maxima (Rimu)cmacpeB270
Cp4.1LG17g00350Cucurbita maxima (Rimu)cmacpeB915
Cp4.1LG17g00350Cucurbita moschata (Rifu)cmocpeB233
Cp4.1LG17g00350Cucurbita moschata (Rifu)cmocpeB852
Cp4.1LG17g00350Wild cucumber (PI 183967)cpecpiB307
Cp4.1LG17g00350Wild cucumber (PI 183967)cpecpiB325
Cp4.1LG17g00350Cucumber (Chinese Long) v2cpecuB307
Cp4.1LG17g00350Cucumber (Chinese Long) v2cpecuB324
Cp4.1LG17g00350Bottle gourd (USVL1VR-Ls)cpelsiB247
Cp4.1LG17g00350Watermelon (Charleston Gray)cpewcgB291
Cp4.1LG17g00350Watermelon (97103) v1cpewmB329
Cp4.1LG17g00350Melon (DHL92) v3.5.1cpemeB283
Cp4.1LG17g00350Melon (DHL92) v3.5.1cpemeB314
Cp4.1LG17g00350Cucumber (Gy14) v2cgybcpeB202
Cp4.1LG17g00350Cucumber (Gy14) v2cgybcpeB348
Cp4.1LG17g00350Cucumber (Gy14) v2cgybcpeB784
Cp4.1LG17g00350Melon (DHL92) v3.6.1cpemedB331
Cp4.1LG17g00350Melon (DHL92) v3.6.1cpemedB350
Cp4.1LG17g00350Melon (DHL92) v3.6.1cpemedB368
Cp4.1LG17g00350Silver-seed gourdcarcpeB0394
Cp4.1LG17g00350Silver-seed gourdcarcpeB0985
Cp4.1LG17g00350Cucumber (Chinese Long) v3cpecucB0376
Cp4.1LG17g00350Cucumber (Chinese Long) v3cpecucB0379
Cp4.1LG17g00350Cucumber (Chinese Long) v3cpecucB0404