Cp4.1LG16g08670 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g08670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Photosystem II 5 kDa protein
Location	Cp4.1LG16 : 8280701 .. 8295433 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTACTTTCAACCTTATTCCACTTAACCTGTTGAATTTTCAAAATTCAAATTTTTGTCCTTATAAATTCAATATATCTTAAATCTACCACTTATTATTATTATTATTATTTTTCTTTTTTTTTTGTAAAGAGAAGTTGTAATTATTGTTCTTGTAGAACAGCGGTAGAAACGCTTGGTTGTGAATCTAGCATGTAAAGAGAAGTTGTAATTGGGCAAAGAGATAAAGGGGAACACGTGGCAAGAGGGCATTGGTTAGAAAATGTGATAGGATAAGGAAATGGATGATGTTTGAATGAAGAATGAGCAGAAGGAGGGTTGAATCATCTGGACACACTCCCAAACATAAACTATATCCTCTTTCTCCTTCACCCACCTCTCTCAACAACCACTAATCTCCTCAATCTCAGACCCCAATTTCTCCAAATCCCTGAAAATGGCCTCCATGTCCATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCCCCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTTGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCGGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGCCGCAAATGATTTCCAGATGTTTTCTCTGTTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCTTCTTCCCTCTCAAATCATTTCATTTGGTTTCTGGTTTCCGAGTTCTATTGTAAAATCTGTATAAGAAAGCTATGAATTGCCATGAATCCCCCTTCAGTGTTCTTGTTTCTGCAACTCCTTTCTTTCTTATCACACTTTTAAACAAATCAAAACTTTTATCCGATCATAAACAGTCAGACCAATATGAACATATCTCAACAAAACAATGATGAACATATCTCAACAAAACATGATAGTCAGACCAATATGAACATATCTCAACAAAACATGATATTCAAGACGTGGAAACCAACCCATCCTAATGTGGTCATTTCATTCTTCCTATGGTTGGCTGTTTAGTGGACAGACTTCAAAGCGGATCTAAGAACCCTAAACTCAATCCAGAAGCGTTTCAATATGAAAACCATGATTCGACGAAAATAAGGAACTTTATATCTCACTCTGTTCAAGAATATGAATTCAAAGAGACCATTAATGGAGGTTGGCAAGAAGATCCCAGAAAGTGCTGGAGCTTGATCCTGAGCCAATGGTGTTTGACTTGGAATAGACTTAAAATGATAATAATATTAATAATTATAGGGTCTTATATCATAAACGAATGGCAGAAAACCCAACATAAGTGTTTTTATATATATATACCAAATATTTGCATTCTTCAGATATCGGTTGAATCATTTCATCTTTCAGACGGTTTATCTATACACCTTAATTAGTAAGATTAAATGACCCTTCTCTGAACAACTTCAAGCTCAGGTTGTTGAATCTTTCCCGTGAATATTGCCTCGATGCTTTTCTCCAATCGGTTCCCGCCTTCATCATTCCTGCAAACTCCTCGTAGCTTATGCATCCGTCCTACAAAACCAGAATACGAAGGGTTAGAAGAACTGCCCAATAAGTTTCGGAGCTGAACTACTTTCGAGGAATATCGAGGAATGGAGCATTTCGAGGAATATCGAGTTTGTGTATGTTACTAAGAACTGGACATGAGGTACTGACCTTATCAGTGTCGACATCGTGCATAATGGCACTGATGACATCCTCACTGTTTGTTTCTTCATCGTTTAGCACAGCTCGAAGCTCTTCAATCTCGATGAAACCACTCTGATTTTGATCAAAGAATGCAAAAGCTTTATGTAGGTGCTCGTCATTTGCCATCCTTCTGAGGTGGATTGAAAGTGCAACAAACTCTCCGTAGTTGAGAGTTCCATCATCATGAACACCAGCCTGTAGAAAGAAAAAGTTGAGTCAGTAATTGTGTCTAAAAGTTTGATTACTACTTCACAAGATAGAATAGACTGCCCCTTTGAATCACAGAGACACCATGAATTCAAGCATCTAACCATTCCTGCTTCGTTTTTGTTTTTGTAACATCCCAAGCCCACCGCGAGTAGATATTGTCTTTTTTGGGCTTTCCTCTCAATGTTTTTAAAATACCTATGCTAGGGAGATGTTTCTACACCCTTATAAAAAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTAGAGGCCCAGAGTCCTTGCTAGCACTCATTCCCTTCTCCAATCGATGTGGGACCCCCCAAATCACCCCCTTCGGGAGCTAGCGTCCTCGCTGGCACTCATTCCCTTCTCCAATCGATGTGGGACCTCCCAATCCACCTCCCTTCAGGGCCCAGCGTCCACACTGGCACTCATTCCCTTCTCCAATTGATGTGGGACCCCCAATCCACTCCCTTCGGGACCAGCATCCTTGCTGGCACACCGCCTTGTGTCCAACCCCTTTGGGCCTCAGCCTCCTCGCTGGCACATCACCCGATGTCTGGTTCTGTTACCATTTGTATCAGCCTAAGCCCACCGCTAGCAGATATAGTCTCTTTAAAATGTGTCTTCTAGGGAGATGTTTTCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACNCTTTTTTTTTTGTAAAGAGAAGTTGTAATTATTGTTCTTGTAGAACAGCGGTAGAAACGCTTGGTTGTGAATCTAGCATGTAAAGAGAAGTTGTAATTGGGCAAAGAGATAAAGGGGAACACGTGGCAAGAGGGCATTGGTTAGAAAATGTGATAGGATAAGGAAATGGATGATGTTTGAATGAAGAATGAGCAGAAGGAGGGTTGAATCATCTGGACACACTCCCAAACATAAACTATATCCTCTTTCTCCTTCACCCACCTCTCTCAACAACCACTAATCTCCTCAATCTCAGACCCCAATTTCTCCAAATCCCTGAAAATGGCCTCCATGTCCATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCCCCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTTGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCGGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGCCGCAAATGATTTCCAGATGTTTTCTCTGTTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCTTCTTCCCTCTCAAATCATTTCATTTGGTTTCTGGTTTCCGAGTTCTATTGTAAAATCTGTATAAGAAAGCTATGAATTGCCATGAATCCCCCTTCAGTGTTCTTGTTTCTGCAACTCCTTTCTTTCTTATCACACTTTTAAACAAATCAAAACTTTTATCCGATCATAAACAGTCAGACCAATATGAACATATCTCAACAAAACAATGATGAACATATCTCAACAAAACATGATAGTCAGACCAATATGAACATATCTCAACAAAACATGATATTCAAGACGTGGAAACCAACCCATCCTAATGTGGTCATTTCATTCTTCCTATGGTTGGCTGTTTAGTGGACAGACTTCAAAGCGGATCTAAGAACCCTAAACTCAATCCAGAAGCGTTTCAATATGAAAACCATGATTCGACGAAAATAAGGAACTTTATATCTCACTCTGTTCAAGAATATGAATTCAAAGAGACCATTAATGGAGGTTGGCAAGAAGATCCCAGAAAGTGCTGGAGCTTGATCCTGAGCCAATGGTGTTTGACTTGGAATAGACTTAAAATGATAATAATATTAATAATTATAGGGTCTTATATCATAAACGAATGGCAGAAAACCCAACATAAGTGTTTTTATATATATATACCAAATATTTGCATTCTTCAGATATCGGTTGAATCATTTCATCTTTCAGACGGTTTATCTATACACCTTAATTAGTAAGATTAAATGACCCTTCTCTGAACAACTTCAAGCTCAGGTTGTTGAATCTTTCCCGTGAATATTGCCTCGATGCTTTTCTCCAATCGGTTCCCGCCTTCATCATTCCTGCAAACTCCTCGTAGCTTATGCATCCGTCCTACAAAACCAGAATACGAAGGGTTAGAAGAACTGCCCAATAAGTTTCGGAGCTGAACTACTTTCGAGGAATATCGAGGAATGGAGCATTTCGAGGAATATCGAGTTTGTGTATGTTACTAAGAACTGGACATGAGGTACTGACCTTATCAGTGTCGACATCGTGCATAATGGCACTGATGACATCCTCACTGTTTGTTTCTTCATCGTTTAGCACAGCTCGAAGCTCTTCAATCTCGATGAAACCACTCTGATTTTGATCAAAGAATGCAAAAGCTTTATGTAGGTGCTCGTCATTTGCCATCCTTCTGAGGTGGATTGAAAGTGCAACAAACTCTCCGTAGTTGAGAGTTCCATCATCATGAACACCAGCCTGTAGAAAGAAAAAGTTGAGTCAGTAATTGTGTCTAAAAGTTTGATTACTACTTCACAAGATAGAATAGACTGCCCCTTTGAATCACAGAGACACCATGAATTCAAGCATCTAACCATTCCTGCTTCGTTTTTGTTTTTGTAACATCCCAAGCCCACCGCGAGTAGATATTGTCTTTTTTGGGCTTTCCTCTCAATGTTTTTAAAATACCTATGCTAGGGAGATGTTTCTACACCCTTATAAAAAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTAGAGGCCCAGAGTCCTTGCTAGCACTCATTCCCTTCTCCAATCGATGTGGGACCCCCCAAATCACCCCCTTCGGGAGCTAGCGTCCTCGCTGGCACTCATTCCCTTCTCCAATCGATGTGGGACCTCCCAATCCACCTCCCTTCAGGGCCCAGCGTCCACACTGGCACTCATTCCCTTCTCCAATTGATGTGGGACCCCCAATCCACTCCCTTCGGGACCAGCATCCTTGCTGGCACACCGCCTTGTGTCCAACCCCTTTGGGCCTCAGCCTCCTCGCTGGCACATCACCCGATGTCTGGTTCTGTTACCATTTGTATCAGCCTAAGCCCACCGCTAGCAGATATAGTCTCTTTAAAATGTGTCTTCTAGGGAGATGTTTTCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACTGATGTGGGATCTCATAGTTTTCTTTTTAGAGAACAACGGCCCCTATATCTACGTTTGTCGGGGGGAAAAAACAAAATCTAAACAAAACGCACACGTTCAAGGATACGAAAACAAAACAGAACAGAGAATTGTACATACTGCTTCCATAAGTATCTGAAGATCTGCTTCTGGAATCTGTTGTCCGAGCTTTTGCAATCCACTTCTCAGCTCCTCCAAATTTATCTTGCCCCTCTTCTCAACGTCCATCATTTCAAATGCATCCTTTATGCCGGCTACTTCCTCCACTGACAAATGCTCAGCGATCACCTAAGGACAATAATCAAATGAAATGTCATTTATAACCCAGGCAATCTATCCTATAAAACACCCCAAATGACGTTTATGATCACCCTTAGAGCTCGTTTCTTGAGCTTGTTCATCACAGAAAATTGCTTGAGTCTTGCTTTTACTGTCTCGCCTAATGGAACATTTGGAGCCTTCTTAGCATTTTGTAACCAAGGGTGGTCTGCACAAAGTGATATTTCAGGTATTCTGTGCAAATTCTAAACTACAAGTGTGAAAGCAGTGGACATGATACCTAGAACTTCCTGAGCGGTAAGGCGCCGTTTGGGATTGGGATCAAGCATTTTTCTTACAAGGTCCTTTGCATTTTCAGAGACTCTTGGCCAGGGGTCTCTCCTAAAATCAATAACCGAGCGAATAATTGCCTGTGCTACACCCTGTTCAGTTTCTACACGAANAAATCATTTCATTTGGTTTCTGGTTTCCGAGTTCTATTGTAAAATCTGTATAAGAAAGCTATGAATTGCCATGAATCCCCCTTCAGTGTTCTTGTTTCTGCAACTCCTTTCTTTCTTATCACACTTTTAAACAAATCAAAACTTTTATCCGATCATAAACAGTCAGACCAATATGAACATATCTCAACAAAACAATGATGAACATATCTCAACAAAACATGATAGTCAGACCAATATGAACATATCTCAACAAAACATGATATTCAAGACGTGGAAACCAACCCATCCTAATGTGGTCATTTCATTCTTCCTATGGTTGGCTGTTTAGTGGACAGACTTCAAAGCGGATCTAAGAACCCTAAACTCAATCCAGAAGCGTTTCAATATGAAAACCATGATTCGACGAAAATAAGGAACTTTATATCTCACTCTGTTCAAGAATATGAATTCAAAGAGACCATTAATGGAGGTTGGCAAGAAGATCCCAGAAAGTGCTGGAGCTTGATCCTGAGCCAATGGTGTTTGACTTGGAATAGACTTAAAATGATAATAATATTAATAATTATAGGGTCTTATATCATAAACGAATGGCAGAAAACCCAACATAAGTGTTTTTATATATATATACCAAATATTTGCATTCTTCAGATATCGGTTGAATCATTTCATCTTTCAGACGGTTTATCTATACACCTTAATTAGTAAGATTAAATGACCCTTCTCTGAACAACTTCAAGCTCAGGTTGTTGAATCTTTCCCGTGAATATTGCCTCGATGCTTTTCTCCAATCGGTTCCCGCCTTCATCATTCCTGCAAACTCCTCGTAGCTTATGCATCCGTCCTACAAAACCAGAATACGAAGGGTTAGAAGAACTGCCCAATAAGTTTCGGAGCTGAACTACTTTCGAGGAATATCGAGGAATGGAGCATTTCGAGGAATATCGAGTTTGTGTATGTTACTAAGAACTGGACATGAGGTACTGACCTTATCAGTGTCGACATCGTGCATAATGGCACTGATGACATCCTCACTGTTTGTTTCTTCATCGTTTAGCACAGCTCGAAGCTCTTCAATCTCGATGAAACCACTCTGATTTTGATCAAAGAATGCAAAAGCTTTATGTAGGTGCTCGTCATTTGCCATCCTTCTGAGGTGGATTGAAAGTGCAACAAACTCTCCGTAGTTGAGAGTTCCATCATCATGAACACCAGCCTGTAGAAAGAAAAAGTTGAGTCAGTAATTGTGTCTAAAAGTTTGATTACTACTTCACAAGATAGAATAGACTGCCCCTTTGAATCACAGAGACACCATGAATTCAAGCATCTAACCATTCCTGCTTCGTTTTTGTTTTTGTAACATCCCAAGCCCACCGCGAGTAGATATTGTCTTTTTTGGGCTTTCCTCTCAATGTTTTTAAAATACCTATGCTAGGGAGATGTTTCTACACCCTTATAAAAAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTAGAGGCCCAGAGTCCTTGCTAGCACTCATTCCCTTCTCCAATCGATGTGGGACCCCCCAAATCACCCCCTTCGGGAGCTAGCGTCCTCGCTGGCACTCATTCCCTTCTCCAATCGATGTGGGACCTCCCAATCCACCTCCCTTCAGGGCCCAGCGTCCACACTGGCACTCATTCCCTTCTCCAATTGATGTGGGACCCCCAATCCACTCCCTTCGGGACCAGCATCCTTGCTGGCACACCGCCTTGTGTCCAACCCCTTTGGGCCTCAGCCTCCTCGCTGGCACATCACCCGATGTCTGGTTCTGTTACCATTTGTATCAGCCTAAGCCCACCGCTAGCAGATATAGTCTCTTTAAAATGTGTCTTCTAGGGAGATGTTTTCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACTGATGTGGGATCTCATAGTTTTCTTTTTAGAGAACAACGGCCCCTATATCTACGTTTGTCGGGGGGAAAAAACAAAATCTAAACAAAACGCACACGTTCAAGGATACGAAAACAAAACAGAACAGAGAATTGTACATACTGCTTCCATAAGTATCTGAAGATCTGCTTCTGGAATCTGTTGTCCGAGCTTTTGCAATCCACTTCTCAGCTCCTCCAAATTTATCTTGCCCCTCTTCTCAACGTCCATCATTTCAAATGCATCCTTTATGCCGGCTACTTCCTCCACTGACAAATGCTCAGCGATCACCTAAGGACAATAATCAAATGAAATGTCATTTATAACCCAGGCAATCTATCCTATAAAACACCCCAAATGACGTTTATGATCACCCTTAGAGCTCGTTTCTTGAGCTTGTTCATCACAGAAAATTGCTTGAGTCTTGCTTTTACTGTCTCGCCTAATGGAACATTTGGAGCCTTCTTAGCATTTTGTAACCAAGGGTGGTCTGCACAAAGTGATATTTCAGGTATTCTGTGCAAATTCTAAACTACAAGTGTGAAAGCAGTGGACATGATACCTAGAACTTCCTGAGCGGTAAGGCGCCGTTTGGGATTGGGATCAAGCATTTTTCTTACAAGGTCCTTTGCATTTTCAGAGACTCTTGGCCAGGGGTCTCTCCTAAAATCAATAACCGAGCGAATAATTGCCTGTGCTACACCCTGTTCAGTTTCTACACGAAAATCGAAAGCTTATGAGGAGGAAATCTAAAAGAAGAACTACAAAAACTACACTAACAGGCGACTTATGTGAAAGATTCTATCCACAAGCAATGAGAACTTATTTCTTAACCAAACGGTGTATTATATGCATTCATTGTTCTTACAACATATGAACTGTGTAGAGCACAAAAATTCAAACCTGCCCAAAATGGTGGAATGCCACAGAGTAAAATATAGAGGATAACCCCGGCGCTCCAAACATCGACTTCTGGACCATAGTTCTTTTTCAGGACCTCTGGGGCCATGTAATAAGGACTGCCTACTATTTCATTGAATTGTTCACCTAATCCAATAGAAACAGTAATGTATAGTACGTTTCATGACATGTACAAATAGAAAGGTGCGGCAAGTGTAACAAAACAAGAATGCACAACAAAATGATAACATGATTCTCGTATGTCAACTGACTACAAGCTGCAATACCTCGTTTAAAAGTGATAGACAGTCCAAAATCGATTGCCTTCAATGGGGATGATTCCTTCTTATTTGCAAAAAGAAAATTTTCTGGTTTGAGATCACGATGCATCACTCCATGTTTATGACAAGCCTGTAACATGAAATACATGTAAATAAACAAGATTACTTCTCAAGAATAAAAATCTCGAAGTCATATGAAAAATACAATTGTGAGATCCAAGATTGGTTGGGAAGGAGAGTGAAGCTTTTTTTATAAGGGTGTGGAAACCTCTCCCTAAGAGACACGTTTTGAANAAAACTTTTATCCGATCATAAACAGTCAGACCAATATGAACATATCTCAACAAAACAATGATGAACATATCTCAACAAAACATGATAGTCAGACCAATATGAACATATCTCAACAAAACATGATATTCAAGACGTGGAAACCAACCCATCCTAATGTGGTCATTTCATTCTTCCTATGGTTGGCTGTTTAGTGGACAGACTTCAAAGCGGATCTAAGAACCCTAAACTCAATCCAGAAGCGTTTCAATATGAAAACCATGATTCGACGAAAATAAGGAACTTTATATCTCACTCTGTTCAAGAATATGAATTCAAAGAGACCATTAATGGAGGTTGGCAAGAAGATCCCAGAAAGTGCTGGAGCTTGATCCTGAGCCAATGGTGTTTGACTTGGAATAGACTTAAAATGATAATAATATTAATAATTATAGGGTCTTATATCATAAACGAATGGCAGAAAACCCAACATAAGTGTTTTTATATATATATACCAAATATTTGCATTCTTCAGATATCGGTTGAATCATTTCATCTTTCAGACGGTTTATCTATACACCTTAATTAGTAAGATTAAATGACCCTTCTCTGAACAACTTCAAGCTCAGGTTGTTGAATCTTTCCCGTGAATATTGCCTCGATGCTTTTCTCCAATCGGTTCCCGCCTTCATCATTCCTGCAAACTCCTCGTAGCTTATGCATCCGTCCTACAAAACCAGAATACGAAGGGTTAGAAGAACTGCCCAATAAGTTTCGGAGCTGAACTACTTTCGAGGAATATCGAGGAATGGAGCATTTCGAGGAATATCGAGTTTGTGTATGTTACTAAGAACTGGACATGAGGTACTGACCTTATCAGTGTCGACATCGTGCATAATGGCACTGATGACATCCTCACTGTTTGTTTCTTCATCGTTTAGCACAGCTCGAAGCTCTTCAATCTCGATGAAACCACTCTGATTTTGATCAAAGAATGCAAAAGCTTTATGTAGGTGCTCGTCATTTGCCATCCTTCTGAGGTGGATTGAAAGTGCAACAAACTCTCCGTAGTTGAGAGTTCCATCATCATGAACACCAGCCTGTAGAAAGAAAAAGTTGAGTCAGTAATTGTGTCTAAAAGTTTGATTACTACTTCACAAGATAGAATAGACTGCCCCTTTGAATCACAGAGACACCATGAATTCAAGCATCTAACCATTCCTGCTTCGTTTTTGTTTTTGTAACATCCCAAGCCCACCGCGAGTAGATATTGTCTTTTTTGGGCTTTCCTCTCAATGTTTTTAAAATACCTATGCTAGGGAGATGTTTCTACACCCTTATAAAAAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTAGAGGCCCAGAGTCCTTGCTAGCACTCATTCCCTTCTCCAATCGATGTGGGACCCCCCAAATCACCCCCTTCGGGAGCTAGCGTCCTCGCTGGCACTCATTCCCTTCTCCAATCGATGTGGGACCTCCCAATCCACCTCCCTTCAGGGCCCAGCGTCCACACTGGCACTCATTCCCTTCTCCAATTGATGTGGGACCCCCAATCCACTCCCTTCGGGACCAGCATCCTTGCTGGCACACCGCCTTGTGTCCAACCCCTTTGGGCCTCAGCCTCCTCGCTGGCACATCACCCGATGTCTGGTTCTGTTACCATTTGTATCAGCCTAAGCCCACCGCTAGCAGATATAGTCTCTTTAAAATGTGTCTTCTAGGGAGATGTTTTCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACTGATGTGGGATCTCATAGTTTTCTTTTTAGAGAACAACGGCCCCTATATCTACGTTTGTCGGGGGGAAAAAACAAAATCTAAACAAAACGCACACGTTCAAGGATACGAAAACAAAACAGAACAGAGAATTGTACATACTGCTTCCATAAGTATCTGAAGATCTGCTTCTGGAATCTGTTGTCCGAGCTTTTGCAATCCACTTCTCAGCTCCTCCAAATTTATCTTGCCCCTCTTCTCAACGTCCATCATTTCAAATGCATCCTTTATGCCGGCTACTTCCTCCACTGACAAATGCTCAGCGATCACCTAAGGACAATAATCAAATGAAATGTCATTTATAACCCAGGCAATCTATCCTATAAAACACCCCAAATGACGTTTATGATCACCCTTAGAGCTCGTTTCTTGAGCTTGTTCATCACAGAAAATTGCTTGAGTCTTGCTTTTACTGTCTCGCCTAATGGAACATTTGGAGCCTTCTTAGCATTTTGTAACCAAGGGTGGTCTGCACAAAGTGATATTTCAGGTATTCTGTGCAAATTCTAAACTACAAGTGTGAAAGCAGTGGACATGATACCTAGAACTTCCTGAGCGGTAAGGCGCCGTTTGGGATTGGGATCAAGCATTTTTCTTACAAGGTCCTTTGCATTTTCAGAGACTCTTGGCCAGGGGTCTCTCCTAAAATCAATAACCGAGCGAATAATTGCCTGTGCTACACCCTGTTCAGTTTCTACACGAAAATCGAAAGCTTATGAGGAGGAAATCTAAAAGAAGAACTACAAAAACTACACTAACAGGCGACTTATGTGAAAGATTCTATCCACAAGCAATGAGAACTTATTTCTTAACCAAACGGTGTATTATATGCATTCATTGTTCTTACAACATATGAACTGTGTAGAGCACAAAAATTCAAACCTGCCCAAAATGGTGGAATGCCACAGAGTAAAATATAGAGGATAACCCCGGCGCTCCAAACATCGACTTCTGGACCATAGTTCTTTTTCAGGACCTCTGGGGCCATGTAATAAGGACTGCCTACTATTTCATTGAATTGTTCACCTAATCCAATAGAAACAGTAATGTATAGTACGTTTCATGACATGTACAAATAGAAAGGTGCGGCAAGTGTAACAAAACAAGAATGCACAACAAAATGATAACATGATTCTCGTATGTCAACTGACTACAAGCTGCAATACCTCGTTTAAAAGTGATAGACAGTCCAAAATCGATTGCCTTCAATGGGGATGATTCCTTCTTATTTGCAAAAAGAAAATTTTCTGGTTTGAGATCACGATGCATCACTCCATGTTTATGACAAGCCTGTAACATGAAATACATGTAAATAAACAAGATTACTTCTCAAGAATAAAAATCTCGAAGTCATATGAAAAATACAATTGTGAGATCCAAGATTGGTTGGGAAGGAGAGTGAAGCTTTTTTTATAAGGGTGTGGAAACCTCTCCCTAAGAGACACGTTTTGAAAACTTTGAGGGGAAGCTCGAAAGGGAAAGCCCAAAGAGGACAATATCGGTTAGTGGTGGGCTTGAGCTGTTACAAATGGTATCAAAGCCAGACACAGGGCGTTGTGCTAGCAAGGACGCTGGGTCCTGAAGGGGAGTGGATTGAGAGGTCCTACATTGATTGAAGAAGGTAACGAGTGCTAGCGAGAACACTGGGTCCCGAAGGATGAGGGAGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACNCCTTCTGAGGTGGATTGAAAGTGCAACAAACTCTCCGTAGTTGAGAGTTCCATCATCATGAACACCAGCCTGTAGAAAGAAAAAGTTGAGTCAGTAATTGTGTCTAAAAGTTTGATTACTACTTCACAAGATAGAATAGACTGCCCCTTTGAATCACAGAGACACCATGAATTCAAGCATCTAACCATTCCTGCTTCGTTTTTGTTTTTGTAACATCCCAAGCCCACCGCGAGTAGATATTGTCTTTTTTGGGCTTTCCTCTCAATGTTTTTAAAATACCTATGCTAGGGAGATGTTTCTACACCCTTATAAAAAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTAGAGGCCCAGAGTCCTTGCTAGCACTCATTCCCTTCTCCAATCGATGTGGGACCCCCCAAATCACCCCCTTCGGGAGCTAGCGTCCTCGCTGGCACTCATTCCCTTCTCCAATCGATGTGGGACCTCCCAATCCACCTCCCTTCAGGGCCCAGCGTCCACACTGGCACTCATTCCCTTCTCCAATTGATGTGGGACCCCCAATCCACTCCCTTCGGGACCAGCATCCTTGCTGGCACACCGCCTTGTGTCCAACCCCTTTGGGCCTCAGCCTCCTCGCTGGCACATCACCCGATGTCTGGTTCTGTTACCATTTGTATCAGCCTAAGCCCACCGCTAGCAGATATAGTCTCTTTAAAATGTGTCTTCTAGGGAGATGTTTTCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACTGATGTGGGATCTCATAGTTTTCTTTTTAGAGAACAACGGCCCCTATATCTACGTTTGTCGGGGGGAAAAAACAAAATCTAAACAAAACGCACACGTTCAAGGATACGAAAACAAAACAGAACAGAGAATTGTACATACTGCTTCCATAAGTATCTGAAGATCTGCTTCTGGAATCTGTTGTCCGAGCTTTTGCAATCCACTTCTCAGCTCCTCCAAATTTATCTTGCCCCTCTTCTCAACGTCCATCATTTCAAATGCATCCTTTATGCCGGCTACTTCCTCCACTGACAAATGCTCAGCGATCACCTAAGGACAATAATCAAATGAAATGTCATTTATAACCCAGGCAATCTATCCTATAAAACACCCCAAATGACGTTTATGATCACCCTTAGAGCTCGTTTCTTGAGCTTGTTCATCACAGAAAATTGCTTGAGTCTTGCTTTTACTGTCTCGCCTAATGGAACATTTGGAGCCTTCTTAGCATTTTGTAACCAAGGGTGGTCTGCACAAAGTGATATTTCAGGTATTCTGTGCAAATTCTAAACTACAAGTGTGAAAGCAGTGGACATGATACCTAGAACTTCCTGAGCGGTAAGGCGCCGTTTGGGATTGGGATCAAGCATTTTTCTTACAAGGTCCTTTGCATTTTCAGAGACTCTTGGCCAGGGGTCTCTCCTAAAATCAATAACCGAGCGAATAATTGCCTGTGCTACACCCTGTTCAGTTTCTACACGAAAATCGAAAGCTTATGAGGAGGAAATCTAA

mRNA sequence

ATGGGAGAAGTTAACAGCGACCCCAATTTCTCCAAATCCCTGAAAATGGCCTCCATGTCCATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCCCCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTTGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCGGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCACCCCAATTTCTCCAAATCCCTGAAAATGGCCTCCATGTCCATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCCCCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTTGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCGGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCAGACTCTTGGCCAGGGGTCTCTCCTAAAATCAATAACCGAGCGAATAATTGCCTGTGCTACACCCTGTTCAGTTTCTACACGAAAATCGAAAGCTTATGAGGAGGAAATCTAA

Coding sequence (CDS)

ATGGGAGAAGTTAACAGCGACCCCAATTTCTCCAAATCCCTGAAAATGGCCTCCATGTCCATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCCCCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTTGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCGGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCACCCCAATTTCTCCAAATCCCTGAAAATGGCCTCCATGTCCATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCCCCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTTGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCGGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCAGACTCTTGGCCAGGGGTCTCTCCTAAAATCAATAACCGAGCGAATAATTGCCTGTGCTACACCCTGTTCAGTTTCTACACGAAAATCGAAAGCTTATGAGGAGGAAATCTAA

Protein sequence

MGEVNSDPNFSKSLKMASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAHPNFSKSLKMASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQTLGQGSLLKSITERIIACATPCSVSTRKSKAYEEEI

Homology

[Close]

BLAST of Cp4.1LG16g08670 vs. Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=3 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 1


Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASM++TA+F P  A  PSA      R L V +ASTS      ++  +LE+K  +  S+ 
Sbjct: 1   MASMTMTATFFPAVAKVPSATGG---RRLSVVRASTS------DNTPSLEVK--EQSSTT 60

Query: 192 GRRELVAAAVTVAAATFAKAAMADE--PPRGSAEAKQKYAPICVTMPTAQ 240
            RR+L+  A   A  + AK AMA+E  P RG+  AK+KYA +CVTMPTA+
Sbjct: 61  MRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAK 99

[Close]

BLAST of Cp4.1LG16g08670 vs. Swiss-Prot
Match: PST2_PETHY (Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1


Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MAS+++ +SFL  +   P+   +A RR + + KA             N+ I   +   + 
Sbjct: 1   MASITMMSSFLGGSTVAPAKVPSANRRGVVMVKAM-------HEGENNVVISKNEESKNS 60

Query: 192 GRRELVAAAVTVAAATFAKAAMAD-EPPRGSAEAKQKYAPICVTMPTAQ 240
           GRREL  A    AA + AK AMAD EP RG+ EAK+KY+ +CVT PTA+
Sbjct: 61  GRRELFFAMAAAAACSVAKTAMADEEPKRGTPEAKKKYSSVCVTNPTAR 102

[Close]

BLAST of Cp4.1LG16g08670 vs. Swiss-Prot
Match: PST2_GOSHI (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum GN=PSBT PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.3e-06
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = 1


Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MAS+++T SFL  T     +     RR L V  A+  A       +        K E + 
Sbjct: 1   MASITMTTSFLSTTNLTKGSPRITQRR-LVVANAAKGAQVESVQMSGER-----KTEGNN 60

Query: 192 GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 240
           GRRE++ AA   A  + A  A A EP RGSAEAK+ YAP+CVTMPTA+
Sbjct: 61  GRREMMFAAAAAAICSVAGVATA-EPKRGSAEAKKAYAPVCVTMPTAR 101

[Close]

BLAST of Cp4.1LG16g08670 vs. TrEMBL
Match: A0A0A0KIB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G439930 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-26
Identity = 83/109 (76.15%), Postives = 89/109 (81.65%), Query Frame = 1


Query: 132 MASMSITASFLPFTAT-QPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESS 191
           MASM++TASFLP TAT QPS+ A   RR L V KASTS  A    SN N+E+KNVKVES 
Sbjct: 1   MASMAMTASFLPTTATKQPSSTA---RRPLIVAKASTSNQA----SNVNMEVKNVKVESR 60

Query: 192 QGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 240
           QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICVTMPTA+
Sbjct: 61  QGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTAR 102

[Close]

BLAST of Cp4.1LG16g08670 vs. TrEMBL
Match: A0A0V0RC90_9BILA (Photosystem II 5 kDa protein, chloroplastic OS=Trichinella nelsoni GN=PSBT PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 1


Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASM++TASFL  T T+PS      RR+L V KAS +  A        +E+K  K ESS 
Sbjct: 1   MASMTMTASFLASTITKPSTP----RRSLIVAKASRAPEA----EKVTVEMKQSKEESSS 60

Query: 192 GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 240
           GRR+L+ AA   AA + AK AMADEP RG+  AK+KYAP+CVTMPTA+
Sbjct: 61  GRRDLIFAAAAAAACSIAKVAMADEPERGTPAAKKKYAPVCVTMPTAR 100

[Close]

BLAST of Cp4.1LG16g08670 vs. TrEMBL
Match: M5WVW7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013712mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = 1


Query: 132 MASMSITASFLPFTA---TQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVE 191
           MASM++ ASFL  +A   T+PS A    RR+L V KAS++          +LE+K     
Sbjct: 1   MASMTMAASFLTGSASTITKPSTA----RRSLIVAKASSAP----EGEKGSLEMKKSSSS 60

Query: 192 SSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 240
           SS GRR+L+ AA   AA + AKAAMADEP RGS EAK+KYAP+CVTMPTA+
Sbjct: 61  SSSGRRDLMFAAAAAAACSIAKAAMADEPKRGSKEAKEKYAPVCVTMPTAR 103

[Close]

BLAST of Cp4.1LG16g08670 vs. TrEMBL
Match: A0A068V1C0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040594001 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.3e-13
Identity = 62/111 (55.86%), Postives = 70/111 (63.06%), Query Frame = 1


Query: 132 MASMSITASFLPFTA-TQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESS 191
           MASM++TASFL  +A T+P   AAA RR   V KAS         S     + N K E S
Sbjct: 1   MASMTMTASFLGGSAITKPLPTAAAGRRGALVVKASKV-------SEGEKMVMNNKEEGS 60

Query: 192 QGRRELVAAAVTVAAATFAKAAMAD--EPPRGSAEAKQKYAPICVTMPTAQ 240
            GRR+LV A    AA T AKAAMAD  EP RGS EAK+KYAPICVTMPTA+
Sbjct: 61  NGRRDLVFAVAAAAACTLAKAAMADGVEPKRGSLEAKKKYAPICVTMPTAR 104

[Close]

BLAST of Cp4.1LG16g08670 vs. TrEMBL
Match: A0A022QUV3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015615mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 57/123 (46.34%), Postives = 78/123 (63.41%), Query Frame = 1


Query: 124 PNFSKSLKMASMSITASFLPFTATQPSAAAAA-------ARRALFVPKASTSAAATDSNS 183
           P  +++L MASM++TASFL  +A   ++AAAA       +RR   V +A++   + +  +
Sbjct: 31  PKTTRNLTMASMTMTASFLCGSAASAASAAAATRHLPTTSRRGAMVVRAASKDVSEEVGA 90

Query: 184 NANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMP 240
            A       K ESS  RR ++ A    AA++ AK AMADEP RGSAEAK+KYAPICVTMP
Sbjct: 91  TA------AKEESSNTRRGMMFAVAAAAASSVAKIAMADEPKRGSAEAKKKYAPICVTMP 147

[Close]

BLAST of Cp4.1LG16g08670 vs. TAIR10
Match: AT1G51400.1 (AT1G51400.1 Photosystem II 5 kD protein)

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-12
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 1


Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASM++T+SFLP  +  P+  ++ +RR+L V KAS S   T         ++N K E S 
Sbjct: 1   MASMTMTSSFLPTVSNLPANISSNSRRSLTVVKASGSENTTS--------LENKKQEQSM 60

Query: 192 G-RRELVAAAVTVAAATFAKAAMAD-EPPRGSAEAKQKYAPICVTMPTAQ 240
             RR+LV  A   A  + AK AMAD EP RG+  AK+KYAP+CVTMPTA+
Sbjct: 61  KMRRDLVFTAAAAAVCSLAKVAMADDEPKRGTEAAKKKYAPVCVTMPTAK 102

[Close]

BLAST of Cp4.1LG16g08670 vs. TAIR10
Match: AT3G21055.1 (AT3G21055.1 photosystem II subunit T)

HSP 1 Score: 61.6 bits (148), Expect = 8.6e-10
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 1


Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASM++TA+F P  A  PSA      R L V +ASTS      ++  +LE+K  +  S+ 
Sbjct: 1   MASMTMTATFFPAVAKVPSATGG---RRLSVVRASTS------DNTPSLEVK--EQSSTT 60

Query: 192 GRRELVAAAVTVAAATFAKAAMADE--PPRGSAEAKQKYAPICVTMPTAQ 240
            RR+L+  A   A  + AK AMA+E  P RG+  AK+KYA +CVTMPTA+
Sbjct: 61  MRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAK 99

[Close]

BLAST of Cp4.1LG16g08670 vs. NCBI nr
Match: gi|659097581|ref|XP_008449703.1| (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 90/118 (76.27%), Postives = 95/118 (80.51%), Query Frame = 1


Query: 6   SDPNFSKSLKMASMSITASFLPFTAT-QPSAAAAAARRALFVPKASTSAAATDSNSNANL 65
           S+PNFS  L MASM++TASFLP TAT QPS   A  RRAL V KASTS    +  SN NL
Sbjct: 43  SNPNFSNFLNMASMAMTASFLPTTATKQPS---ATPRRALIVAKASTS----NETSNVNL 102

Query: 66  EIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTA 123
           E+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICVTMPTA
Sbjct: 103 EVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTA 153

[Close]

BLAST of Cp4.1LG16g08670 vs. NCBI nr
Match: gi|449450974|ref|XP_004143237.1| (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 2.1e-26
Identity = 83/109 (76.15%), Postives = 89/109 (81.65%), Query Frame = 1


Query: 132 MASMSITASFLPFTAT-QPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESS 191
           MASM++TASFLP TAT QPS+ A   RR L V KASTS  A    SN N+E+KNVKVES 
Sbjct: 1   MASMAMTASFLPTTATKQPSSTA---RRPLIVAKASTSNQA----SNVNMEVKNVKVESR 60

Query: 192 QGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 240
           QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICVTMPTA+
Sbjct: 61  QGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTAR 102

[Close]

BLAST of Cp4.1LG16g08670 vs. NCBI nr
Match: gi|470111072|ref|XP_004291777.1| (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 1


Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASM++TASFL  T T+PS      RR+L V KAS +  A        +E+K  K ESS 
Sbjct: 1   MASMTMTASFLASTITKPSTP----RRSLIVAKASRAPEA----EKVTVELKQSKEESSS 60

Query: 192 GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 240
           GRR+L+ AA   AA + AK AMADEP RG+  AK+KYAP+CVTMPTA+
Sbjct: 61  GRRDLIFAAAAAAACSIAKVAMADEPERGTPAAKKKYAPVCVTMPTAR 100

[Close]

BLAST of Cp4.1LG16g08670 vs. NCBI nr
Match: gi|954201704|gb|KRX12134.1| (Photosystem II 5 kDa protein, chloroplastic [Trichinella nelsoni])

HSP 1 Score: 88.6 bits (218), Expect = 1.9e-14
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 1


Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASM++TASFL  T T+PS      RR+L V KAS +  A        +E+K  K ESS 
Sbjct: 1   MASMTMTASFLASTITKPSTP----RRSLIVAKASRAPEA----EKVTVEMKQSKEESSS 60

Query: 192 GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 240
           GRR+L+ AA   AA + AK AMADEP RG+  AK+KYAP+CVTMPTA+
Sbjct: 61  GRRDLIFAAAAAAACSIAKVAMADEPERGTPAAKKKYAPVCVTMPTAR 100

[Close]

BLAST of Cp4.1LG16g08670 vs. NCBI nr
Match: gi|645242005|ref|XP_008227347.1| (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Prunus mume])

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = 1


Query: 132 MASMSITASFLPFTA---TQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVE 191
           MASM++ ASFL  +A   T+PS A    RR+L V KAS++          +LE+KN    
Sbjct: 1   MASMTMAASFLTGSASTITKPSTA----RRSLIVAKASSAP----EGEKGSLEMKNSSSS 60

Query: 192 SSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 240
           SS GRR+L+ AA   AA + AKA+MADEP RG+ EAK+KYAP+CVTMPTA+
Sbjct: 61  SSSGRRDLMFAAAAAAACSIAKASMADEPKRGTKEAKEKYAPVCVTMPTAR 103

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g08670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PST2_ARATH	1.5e-08	44.55	Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=3...	[more]
PST2_PETHY	1.1e-06	39.45	Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida PE=1 SV=1	[more]
PST2_GOSHI	9.3e-06	41.67	Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum GN=PSBT PE=4 S...	[more]

BLAST of Cp4.1LG16g08670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIB2_CUCSA	1.5e-26	76.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G439930 PE=4 SV=1	[more]
A0A0V0RC90_9BILA	1.3e-14	53.70	Photosystem II 5 kDa protein, chloroplastic OS=Trichinella nelsoni GN=PSBT PE=4 ...	[more]
M5WVW7_PRUPE	1.1e-13	53.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013712mg PE=4 SV=1	[more]
A0A068V1C0_COFCA	9.3e-13	55.86	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040594001 PE=4 SV=1	[more]
A0A022QUV3_ERYGU	1.3e-11	46.34	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015615mg PE=4 SV=1	[more]

BLAST of Cp4.1LG16g08670 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G51400.1	4.1e-12	47.27	Photosystem II 5 kD protein	[more]
AT3G21055.1	8.6e-10	44.55	photosystem II subunit T	[more]

BLAST of Cp4.1LG16g08670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097581\|ref\|XP_008449703.1\|	1.9e-30	76.27	PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]	[more]
gi\|449450974\|ref\|XP_004143237.1\|	2.1e-26	76.15	PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]	[more]
gi\|470111072\|ref\|XP_004291777.1\|	1.4e-14	53.70	PREDICTED: photosystem II 5 kDa protein, chloroplastic [Fragaria vesca subsp. ve...	[more]
gi\|954201704\|gb\|KRX12134.1\|	1.9e-14	53.70	Photosystem II 5 kDa protein, chloroplastic [Trichinella nelsoni]	[more]
gi\|645242005\|ref\|XP_008227347.1\|	1.6e-13	52.25	PREDICTED: photosystem II 5 kDa protein, chloroplastic [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g08670.1	Cp4.1LG16g08670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRODOM	PD030057		coord: 132..239 score: 6.0E-7coord: 16..122 score: 8.
None	No IPR available	PANTHER	PTHR34940	FAMILY NOT NAMED	coord: 17..122 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG16g08670	Cucsa.124150	Cucumber (Gy14) v1	cgycpeB0315
Cp4.1LG16g08670	CmoCh20G000950	Cucurbita moschata (Rifu)	cmocpeB517
Cp4.1LG16g08670	Cla008554	Watermelon (97103) v1	cpewmB287
Cp4.1LG16g08670	Csa6G439930	Cucumber (Chinese Long) v2	cpecuB281
Cp4.1LG16g08670	MELO3C014587	Melon (DHL92) v3.5.1	cpemeB278
Cp4.1LG16g08670	ClCG02G023150	Watermelon (Charleston Gray)	cpewcgB255
Cp4.1LG16g08670	CSPI06G24150	Wild cucumber (PI 183967)	cpecpiB283
Cp4.1LG16g08670	Lsi10G010690	Bottle gourd (USVL1VR-Ls)	cpelsiB227
Cp4.1LG16g08670	MELO3C014587.2	Melon (DHL92) v3.6.1	cpemedB324
Cp4.1LG16g08670	Bhi10G000225	Wax gourd	cpewgoB0354
Cp4.1LG16g08670	Carg06898	Silver-seed gourd	carcpeB0733

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG16g08670	Cucurbita pepo (Zucchini)	cpecpeB287
Cp4.1LG16g08670	Cucurbita pepo (Zucchini)	cpecpeB305
Cp4.1LG16g08670	Cucurbita pepo (Zucchini)	cpecpeB310
Cp4.1LG16g08670	Cucurbita maxima (Rimu)	cmacpeB125
Cp4.1LG16g08670	Cucurbita maxima (Rimu)	cmacpeB564
Cp4.1LG16g08670	Cucurbita maxima (Rimu)	cmacpeB627
Cp4.1LG16g08670	Cucurbita moschata (Rifu)	cmocpeB053
Cp4.1LG16g08670	Cucurbita moschata (Rifu)	cmocpeB102
Cp4.1LG16g08670	Cucurbita moschata (Rifu)	cmocpeB576
Cp4.1LG16g08670	Wild cucumber (PI 183967)	cpecpiB268
Cp4.1LG16g08670	Bottle gourd (USVL1VR-Ls)	cpelsiB246
Cp4.1LG16g08670	Watermelon (Charleston Gray)	cpewcgB276
Cp4.1LG16g08670	Cucumber (Gy14) v2	cgybcpeB037
Cp4.1LG16g08670	Cucumber (Gy14) v2	cgybcpeB755
Cp4.1LG16g08670	Silver-seed gourd	carcpeB0654
Cp4.1LG16g08670	Silver-seed gourd	carcpeB1273
Cp4.1LG16g08670	Cucumber (Chinese Long) v3	cpecucB0333
Cp4.1LG16g08670	Cucumber (Chinese Long) v3	cpecucB0348
Cp4.1LG16g08670	Wax gourd	cpewgoB0375