Cp4.1LG16g04070 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g04070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGlycine-rich RNA-binding protein, putative
LocationCp4.1LG16 : 5601967 .. 5603458 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGAGGTGTAGTCTACATGTTCGACGAAATGTCTAGTCGATTTCAGACCTCAGTTCATGATGTGTGCCTCTGGGTTGAAGCTTTTTGCTTCATTTCCATTCATAATTCCAATGATTTTTTAGGAAAAAAGTTGTTTCATTGAAGTTTCCTGTTTTACTATGCTTCTATGATTTTCTTGGAATATTGAGACAGCAAGACAATGAGAAATTTAGAGATTGGAAATTCTGCATGAAGAACTGTGAAGTACAACGAATTTGAGAGGTGGGAAATTAAAATTTATGTTTGAGCTGAAAGAAATTTGATGGCCATTAGTGATCACTCTGGAACTTCTCCAGCAAAATAGCTTATGGACATGGAGTTCATTTGGTATAGTTTAGATGAAATTGAATGGTGGCTGTGAAAAATCAATGGTGAGCATTGTAGAAACCTTGAAGCCCATTGGTTATCGCTCTGAAACTTCTCCAGAAATTAGCCTATGGAATTCAATTGATATAGTTAGGATGAAATTCAATAGCCACTGAGAAACTTCATTAATCATCACTAAAGGAACTTTCATATCCATTGCTGATCACTCTCAAACTTCATCAGCAAATTGCTTATTAAGTTGAGTTCAAGCATGTTTGGGAGTGATTTGAAATGCGTAAATTTATCATTTCTTTCATTTTCAGATGCTTTTAATCCTTCAAAATCAATTTTGATAGCATAAAACGTGTTAGGAGTGATTTTGAACCTGAAAAATGTGTTTTTAACCATTTCAAAATCACACTCTAACAAGCCTTTCTGTTGAGATTTGAATGTTTATATACTCTCTTGACAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTCGGATTTGTGAACTTCACAAATGAAGACGATGCACAAACTGCAAAAGATGCAATGGATGGAAAGGCAAGTCACTATTTAATAAGAAGTTGTTTGACAATGTTTAATCTAACATCCTAAATTAGTCAAAATGATAGTCATCCCGTCACTTTCAGGCACTATTAGGGCGGCCGTTACGAATAAGCTTTGCCCTCGACAAGGTCCGTGGCGGACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACGTGTTTGGCCGAAGATCTTGAAGCTCTTGGTATTTCATCTTCATCTACCTGGAGCATGAATATGTAAGCTTGAACTGTTCAATTCCTACTTCATAATCTGAATCTTGACTTGGTTCTGGAGGTGAATGCTAGACAGGTGTGGGAACCAATAGTATGAAGAACCTTAATTTAGGATTGTTTAATTAGATATTTCCAGTCTATTTGTTCAGAAATCTTGTTTTCCATCTTAATAGTATCCTTGTCCAGTACATTAGATCTATTTGCTTGATTTTTTTATTGGAGTTTGCATTCAAGCACAATTTTAGTTCTGATAAGATTCTAGTGGCATTTTCATAGATTTTTTTTTTATCAGGAAAGGAGAACTATTTTTCACATTCAATAG

mRNA sequence

ATGTATGAGATGAAATTGAATGGTGGCTGTGAAAAATCAATGGTGAGCATTGTAGAAACCTTGAAGCCCATTGGTTATCGCTCTGAAACTTCTCCAGAAATTAGCCTATGGAATTCAATTGATATAGCACTATTAGGGCGGCCGTTACGAATAAGCTTTGCCCTCGACAAGGTCCGTGGCGGACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACGAAAGGAGAACTATTTTTCACATTCAATAG

Coding sequence (CDS)

ATGTATGAGATGAAATTGAATGGTGGCTGTGAAAAATCAATGGTGAGCATTGTAGAAACCTTGAAGCCCATTGGTTATCGCTCTGAAACTTCTCCAGAAATTAGCCTATGGAATTCAATTGATATAGCACTATTAGGGCGGCCGTTACGAATAAGCTTTGCCCTCGACAAGGTCCGTGGCGGACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACGAAAGGAGAACTATTTTTCACATTCAATAG

Protein sequence

MYEMKLNGGCEKSMVSIVETLKPIGYRSETSPEISLWNSIDIALLGRPLRISFALDKVRGGPVVVPRLSNINNERRTIFHIQ
Homology
[Close]
BLAST of Cp4.1LG16g04070 vs. TrEMBL
Match: A0A0A0LQB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416100 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNINN 74
           A+LGRPLRISFALDKVRG PVVVPRLSNINN
Sbjct: 109 AVLGRPLRISFALDKVRGEPVVVPRLSNINN 139

[Close]
BLAST of Cp4.1LG16g04070 vs. TrEMBL
Match: A0A067KVZ4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09990 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.6e-06
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 1 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNINNE 75
           ALLGRPLR+SFAL+KVRGGPVVVPRLSN  ++
Sbjct: 91  ALLGRPLRVSFALEKVRGGPVVVPRLSNAGDD 122

[Close]
BLAST of Cp4.1LG16g04070 vs. TAIR10
Match: AT3G08000.1 (AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 56.6 bits (135), Expect = 8.3e-09
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 

Query: 44  LLGRPLRISFALDKVRGGPVVVPRLSNINNERRTIF 80
           LLGRPLRISFAL++VRGGPVVVPRL     ER  +F
Sbjct: 107 LLGRPLRISFALERVRGGPVVVPRLGKSKRERERVF 142

[Close]
BLAST of Cp4.1LG16g04070 vs. NCBI nr
Match: gi|700208100|gb|KGN63219.1| (hypothetical protein Csa_2G416100 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNINN 74
           A+LGRPLRISFALDKVRG PVVVPRLSNINN
Sbjct: 109 AVLGRPLRISFALDKVRGEPVVVPRLSNINN 139

[Close]
BLAST of Cp4.1LG16g04070 vs. NCBI nr
Match: gi|449468384|ref|XP_004151901.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNINN 74
           A+LGRPLRISFALDKVRG PVVVPRLSNINN
Sbjct: 109 AVLGRPLRISFALDKVRGEPVVVPRLSNINN 139

[Close]
BLAST of Cp4.1LG16g04070 vs. NCBI nr
Match: gi|659111830|ref|XP_008455929.1| (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-06
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNINN 74
           A+LGRPL+ISFAL+KVRGGPV VPRLSNINN
Sbjct: 128 AVLGRPLKISFALEKVRGGPVAVPRLSNINN 158

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g04070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g04070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQB7_CUCSA1.1e-0693.55Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416100 PE=4 SV=1[more]
A0A067KVZ4_JATCU9.6e-0681.25Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09990 PE=4 SV=1[more]
BLAST of Cp4.1LG16g04070 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G08000.18.3e-0972.22 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG16g04070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208100|gb|KGN63219.1|1.6e-0693.55hypothetical protein Csa_2G416100 [Cucumis sativus][more]
gi|449468384|ref|XP_004151901.1|1.6e-0693.55PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis sativ... [more]
gi|659111830|ref|XP_008455929.1|3.6e-0687.10PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g04070.1Cp4.1LG16g04070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g04070Bhi10G001083Wax gourdcpewgoB0355
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g04070Watermelon (Charleston Gray)cpewcgB267
Cp4.1LG16g04070Watermelon (Charleston Gray)cpewcgB269
Cp4.1LG16g04070Watermelon (Charleston Gray)cpewcgB272
Cp4.1LG16g04070Watermelon (97103) v1cpewmB291
Cp4.1LG16g04070Watermelon (97103) v1cpewmB308
Cp4.1LG16g04070Melon (DHL92) v3.5.1cpemeB257
Cp4.1LG16g04070Melon (DHL92) v3.5.1cpemeB273
Cp4.1LG16g04070Cucumber (Gy14) v2cgybcpeB195
Cp4.1LG16g04070Cucumber (Gy14) v2cgybcpeB919
Cp4.1LG16g04070Melon (DHL92) v3.6.1cpemedB302
Cp4.1LG16g04070Melon (DHL92) v3.6.1cpemedB317
Cp4.1LG16g04070Silver-seed gourdcarcpeB0043
Cp4.1LG16g04070Silver-seed gourdcarcpeB0465
Cp4.1LG16g04070Cucumber (Chinese Long) v3cpecucB0336
Cp4.1LG16g04070Cucumber (Chinese Long) v3cpecucB0367
Cp4.1LG16g04070Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG16g04070Cucurbita pepo (Zucchini)cpecpeB304
Cp4.1LG16g04070Cucurbita pepo (Zucchini)cpecpeB311
Cp4.1LG16g04070Cucumber (Gy14) v1cgycpeB0393
Cp4.1LG16g04070Cucumber (Gy14) v1cgycpeB0808
Cp4.1LG16g04070Cucurbita maxima (Rimu)cmacpeB122
Cp4.1LG16g04070Cucurbita maxima (Rimu)cmacpeB525
Cp4.1LG16g04070Cucurbita maxima (Rimu)cmacpeB562
Cp4.1LG16g04070Cucurbita maxima (Rimu)cmacpeB628
Cp4.1LG16g04070Cucurbita moschata (Rifu)cmocpeB100
Cp4.1LG16g04070Cucurbita moschata (Rifu)cmocpeB483
Cp4.1LG16g04070Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g04070Cucurbita moschata (Rifu)cmocpeB577
Cp4.1LG16g04070Wild cucumber (PI 183967)cpecpiB271
Cp4.1LG16g04070Wild cucumber (PI 183967)cpecpiB301
Cp4.1LG16g04070Cucumber (Chinese Long) v2cpecuB269
Cp4.1LG16g04070Cucumber (Chinese Long) v2cpecuB298
Cp4.1LG16g04070Bottle gourd (USVL1VR-Ls)cpelsiB221
Cp4.1LG16g04070Bottle gourd (USVL1VR-Ls)cpelsiB233