Cp4.1LG16g03610 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g03610
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING zinc finger protein
LocationCp4.1LG16 : 5310864 .. 5311988 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTGTCAGTGGAAGGTTATCTTGATGATTCTATTCCATGTTCTGGGCTCTTGCATCTAAACAGGTCTTCTCTCAAGGAAGTTTCTATCACCAGTATATACTTTTCTGCCTTCCTTAATCTTCGTTTTCCTGTTGGGAGCTAGGATCATAGAAGAAAGGAGTACACTCGATTCATTAATCTTTCAGCAGATTTGGCTCTATTTCTATACGATGTTTGATAAGTTGCTTTGTGCATTTTCAGATCAGATGTCAACAAAAGGATCAAACTACAGAACCGTTTGAACTCAGAACTCAGAAGTGACTTCTTATACATTCTACTGATTTTCTTTGATTCATCTGAGCTGATCCCAGTTCTTCAAATTTCAAGGAACCTTATGGGTCTGTCCAGCCTTCCTGCTCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTAAATACGGCCCTATCAATATCTATCTTCAAAGGCATAGTTCGATCGATTCTCCATGTTGTTGGCATCCATCTCTCGTCGCCTACATTACCATCCTCACCAGATTCCATTGAGAATGCTTCTGAATCCATAGAATTCCATCTTAACCCGAACGGAAGTTACATCGAAGAGTTCCGCAGCCGAATCCCAGCAATTCTGTTTAACAAAGTTCACAGCTGCAAATTGCTAGAACATGACTGCTCGGTCTGCCTAACCCAGTTTGCACCTGATTCAGAGATAAACCATTTATCTTGTGGTCATCTTTTCCATAGAGTGTGCTTGGAAAAGTGGCTGGACTACTGGAACCTTACGTGTCCTCTGTGTCGAACTCCGTTCATGCCCGAAGAAGACACAGCTTCCTGCTTCTGGTGAGCATTATGAATATTATGGTTGAGGAATTTCATTCCATGTACAGCAGCATAGTGTAGAAAATCTTAAAAGTGCATCCGCAGGCCATAGCATTTGTACCTTCCATATGCATGAGTAGTTGAAGCGTGATGAGTGTTGATGGGTCTCAGACCTCAGTTATTTCATTGTAAATATGAAGCTTTCTGCTTTTTTTCGTGTTTATGAATCCTTGAGACGAACTTTTTACATTTCGAGTTAATGCAGCTACTTCCCTTTCATCACTTTCCTCCTCAGAATTGCATTGCT

mRNA sequence

ATGAAATTGTCAGTGGAAGGTTATCTTGATGATTCTATTCCATGTTCTGGGCTCTTGCATCTAAACAGATCAGATGTCAACAAAAGGATCAAACTACAGAACCGTTTGAACTCAGAACTCAGAAGTGACTTCTTATACATTCTACTGATTTTCTTTGATTCATCTGAGCTGATCCCAGTTCTTCAAATTTCAAGGAACCTTATGGGTCTGTCCAGCCTTCCTGCTCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTAAATACGGCCCTATCAATATCTATCTTCAAAGGCATAGTTCGATCGATTCTCCATGTTGTTGGCATCCATCTCTCGTCGCCTACATTACCATCCTCACCAGATTCCATTGAGAATGCTTCTGAATCCATAGAATTCCATCTTAACCCGAACGGAAGTTACATCGAAGAGTTCCGCAGCCGAATCCCAGCAATTCTGTTTAACAAAGTTCACAGCTGCAAATTGCTAGAACATGACTGCTCGGTCTGCCTAACCCAGTTTGCACCTGATTCAGAGATAAACCATTTATCTTGTGGTCATCTTTTCCATAGAGTGTGCTTGGAAAAGTGGCTGGACTACTGGAACCTTACGTGTCCTCTGTGTCGAACTCCGTTCATGCCCGAAGAAGACACAGCTTCCTGCTTCTGGTGAGCATTATGAATATTATGGTTGAGGAATTTCATTCCATGTACAGCAGCATAGTGTAGAAAATCTTAAAAGTGCATCCGCAGGCCATAGCATTTGTACCTTCCATATGCATGAGTAGTTGAAGCGTGATGAGTGTTGATGGGTCTCAGACCTCAGTTATTTCATTGTAAATATGAAGCTTTCTGCTTTTTTTCGTGTTTATGAATCCTTGAGACGAACTTTTTACATTTCGAGTTAATGCAGCTACTTCCCTTTCATCACTTTCCTCCTCAGAATTGCATTGCT

Coding sequence (CDS)

ATGAAATTGTCAGTGGAAGGTTATCTTGATGATTCTATTCCATGTTCTGGGCTCTTGCATCTAAACAGATCAGATGTCAACAAAAGGATCAAACTACAGAACCGTTTGAACTCAGAACTCAGAAGTGACTTCTTATACATTCTACTGATTTTCTTTGATTCATCTGAGCTGATCCCAGTTCTTCAAATTTCAAGGAACCTTATGGGTCTGTCCAGCCTTCCTGCTCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTAAATACGGCCCTATCAATATCTATCTTCAAAGGCATAGTTCGATCGATTCTCCATGTTGTTGGCATCCATCTCTCGTCGCCTACATTACCATCCTCACCAGATTCCATTGAGAATGCTTCTGAATCCATAGAATTCCATCTTAACCCGAACGGAAGTTACATCGAAGAGTTCCGCAGCCGAATCCCAGCAATTCTGTTTAACAAAGTTCACAGCTGCAAATTGCTAGAACATGACTGCTCGGTCTGCCTAACCCAGTTTGCACCTGATTCAGAGATAAACCATTTATCTTGTGGTCATCTTTTCCATAGAGTGTGCTTGGAAAAGTGGCTGGACTACTGGAACCTTACGTGTCCTCTGTGTCGAACTCCGTTCATGCCCGAAGAAGACACAGCTTCCTGCTTCTGGTGA

Protein sequence

MKLSVEGYLDDSIPCSGLLHLNRSDVNKRIKLQNRLNSELRSDFLYILLIFFDSSELIPVLQISRNLMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSIENASESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW
Homology
[Close]
BLAST of Cp4.1LG16g03610 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-43
Identity = 95/160 (59.38%), Postives = 116/160 (72.50%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSI----E 127
           MGLSSLP PSEG+L VILVNTALSISI KGIVRS L +VGI LS  +  SSP S+    E
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSS--SSPSSVTVSSE 60

Query: 128 NAS--ESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKL-LEHDCSVCLTQFAPDSEINH 187
           N+S  ES +F +    SY+EEFR+R P + F  +  CK   +++CSVCL++F  DSEIN 
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 188 LSCGHLFHRVCLEKWLDYWNLTCPLCRTPF--MPEEDTAS 219
           L CGHLFH+ CLEKW+DYWN+TCPLCRTP   +PE+   S
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLS 158

[Close]
BLAST of Cp4.1LG16g03610 vs. Swiss-Prot
Match: RHA1B_ARATH (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.7e-11
Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 1 

Query: 85  LVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSIENA-SESIEFHLNPNGSYIEEF 144
           ++ T   I  F+ +V ++   +G       LPS  D  E + S+     L+ + +   E 
Sbjct: 16  VLKTLYVIGFFRDMVDALCPYIG-------LPSFLDHNETSRSDPTRLALSTSATLANEL 75

Query: 145 RSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHL-SCGHLFHRVCLEKWL-DYWNL 204
              IP + F+ + +    E  C+VCL+ F  D +I  L  CGH+FH  CL++W+ D   +
Sbjct: 76  ---IPVVRFSDLLTDP--EDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKI 135

Query: 205 TCPLCRTPFMPEEDTASCFW 222
           TCP+CR  F+PEE +    W
Sbjct: 136 TCPICRNRFLPEEKSTPFDW 143

[Close]
BLAST of Cp4.1LG16g03610 vs. Swiss-Prot
Match: RHA1A_ARATH (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana GN=RHA1A PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.7e-11
Identity = 42/133 (31.58%), Postives = 67/133 (50.38%), Query Frame = 1 

Query: 92  ISIFKGIVRSILHVVGIHLSSPTLPSSPDSIENASESIEFH-LNPNGSYIEEFRSRIPAI 151
           I  F+ IV ++   +G       LP   D  E ++  +  H L+ + S   E    IP +
Sbjct: 24  IGFFRDIVDALCPYIG-------LPRFLDHNETSAPDLTRHALSTSASLANEL---IPVV 83

Query: 152 LFNKVHSCKLLEHDCSVCLTQFAPDSEINHL-SCGHLFHRVCLEKWL-DYWNLTCPLCRT 211
            F+ + +    E  C+VCL+ F  D ++  L  CGH+FH  CL++W+ DY  + CP+CR 
Sbjct: 84  RFSDLPTDP--EDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWIVDYNKMKCPVCRH 143

Query: 212 PFMPEEDTASCFW 222
            F+P+E      W
Sbjct: 144 RFLPKEKYTQSDW 144

[Close]
BLAST of Cp4.1LG16g03610 vs. Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 2.9e-10
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 

Query: 164 DCSVCLTQFAPDSEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPFMP 213
           DC VCL++     E+  L C H+FH+ CLE WL + N  CPLCR+P +P
Sbjct: 73  DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]
BLAST of Cp4.1LG16g03610 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 1 

Query: 164 DCSVCLTQFAPDSEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPFMPEE--------- 221
           DC VCL++     E+  L C H+FH+ CLE WL  +N TCPLCR+  + ++         
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQRSV 144

[Close]
BLAST of Cp4.1LG16g03610 vs. TrEMBL
Match: A0A0A0KAU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.7e-79
Identity = 146/155 (94.19%), Postives = 149/155 (96.13%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS-PTLPSSPDSIENAS 127
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS PTLPSSPDS+ENA 
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 128 ESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHL 187
           ESIEFHLNPNGSYIEEFRSRIPAILF+KV SCK LEHDCSVCLTQF P+SEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 188 FHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW 222
           FHRVCLEKWLDYWNLTCPLCRTP MPEEDTASCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 155

[Close]
BLAST of Cp4.1LG16g03610 vs. TrEMBL
Match: A0A061DMB3_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_002456 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-60
Identity = 116/154 (75.32%), Postives = 133/154 (86.36%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSIENASE 127
           MGLSSLPAPSEGVL ++LVNTALSISI KGI+RSILH+VGIHLSS +  S+ DS+EN SE
Sbjct: 1   MGLSSLPAPSEGVLCILLVNTALSISIVKGIIRSILHIVGIHLSSSS--SASDSVENPSE 60

Query: 128 SIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHLF 187
           S +FHL+ + SYI+EFRSR PAI F+ V SCK  EHDCSVCLTQF P+SEIN LSCGHLF
Sbjct: 61  SFDFHLSTSDSYIDEFRSRTPAIRFDAVCSCKRPEHDCSVCLTQFEPESEINRLSCGHLF 120

Query: 188 HRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW 222
           H+VCLEKWL YWN+TCPLCRTP +PEE+ ASCFW
Sbjct: 121 HKVCLEKWLKYWNVTCPLCRTPLLPEEE-ASCFW 151

[Close]
BLAST of Cp4.1LG16g03610 vs. TrEMBL
Match: C6TE74_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G223600 PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.2e-60
Identity = 118/155 (76.13%), Postives = 129/155 (83.23%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSP--TLPSSPDSIENA 127
           MGLSSLPAPSEGVL V+LVNT LSISIFKGIVR+ILH+VGIHLSS   T PSSPD    A
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSSSTSPSSPDPSLTA 60

Query: 128 SESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGH 187
            ES EFHL+P+ SYIEEFRSR P + F+ V  CK  EHDCSVCLTQF P+SEIN LSCGH
Sbjct: 61  PESFEFHLSPSESYIEEFRSRTPTLRFDSVCCCKQPEHDCSVCLTQFEPESEINRLSCGH 120

Query: 188 LFHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCF 221
           LFH+VCLEKWLDYWN+TCPLCRTP MPE+DT  CF
Sbjct: 121 LFHKVCLEKWLDYWNITCPLCRTPLMPEDDT-PCF 154

[Close]
BLAST of Cp4.1LG16g03610 vs. TrEMBL
Match: A0A0B2SHI0_GLYSO (Putative E3 ubiquitin-protein ligase RHA2B OS=Glycine soja GN=glysoja_022823 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.2e-60
Identity = 118/155 (76.13%), Postives = 129/155 (83.23%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSP--TLPSSPDSIENA 127
           MGLSSLPAPSEGVL V+LVNT LSISIFKGIVR+ILH+VGIHLSS   T PSSPD    A
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSSSTSPSSPDPSLTA 60

Query: 128 SESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGH 187
            ES EFHL+P+ SYIEEFRSR P + F+ V  CK  EHDCSVCLTQF P+SEIN LSCGH
Sbjct: 61  PESFEFHLSPSESYIEEFRSRTPTLRFDSVCCCKQPEHDCSVCLTQFEPESEINRLSCGH 120

Query: 188 LFHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCF 221
           LFH+VCLEKWLDYWN+TCPLCRTP MPE+DT  CF
Sbjct: 121 LFHKVCLEKWLDYWNITCPLCRTPLMPEDDT-PCF 154

[Close]
BLAST of Cp4.1LG16g03610 vs. TrEMBL
Match: A0A0S3R2C1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G250100 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 4.8e-60
Identity = 116/154 (75.32%), Postives = 128/154 (83.12%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTL-PSSPDSIENAS 127
           MGLSSLPAPSEGVL V+LVNT LSISIFKGIVR+ILH+VGIHLSS T  PSSPD  +   
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSTTSPSSPDPYQAPP 60

Query: 128 ESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHL 187
           ES EFHL+P+ SYIEEFRSR P + F+ V  CK  EHDCSVCLTQF P+SEIN LSCGHL
Sbjct: 61  ESFEFHLSPSESYIEEFRSRTPTLRFDSVCCCKRPEHDCSVCLTQFEPESEINRLSCGHL 120

Query: 188 FHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCF 221
           FH+ CLEKWLDYWN+TCPLCRTP MPE+DT  CF
Sbjct: 121 FHKACLEKWLDYWNITCPLCRTPLMPEDDT-PCF 153

[Close]
BLAST of Cp4.1LG16g03610 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-44
Identity = 95/160 (59.38%), Postives = 116/160 (72.50%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSI----E 127
           MGLSSLP PSEG+L VILVNTALSISI KGIVRS L +VGI LS  +  SSP S+    E
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSS--SSPSSVTVSSE 60

Query: 128 NAS--ESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKL-LEHDCSVCLTQFAPDSEINH 187
           N+S  ES +F +    SY+EEFR+R P + F  +  CK   +++CSVCL++F  DSEIN 
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 188 LSCGHLFHRVCLEKWLDYWNLTCPLCRTPF--MPEEDTAS 219
           L CGHLFH+ CLEKW+DYWN+TCPLCRTP   +PE+   S
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLS 158

[Close]
BLAST of Cp4.1LG16g03610 vs. TAIR10
Match: AT1G67856.1 (AT1G67856.1 RING/U-box superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-14
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSIENASE 127
           MG+S  P  SEGV+ ++++NT +S+S+ K +VRS++++V    +           E++  
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDHEDSKR 60

Query: 128 SIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHL-SCGHL 187
                +    S  E   SR      N+  +      DC VCL  F  + E++ L SC H 
Sbjct: 61  RRRISITHFESLCENRGSR------NEREAM-----DCCVCLCGFKEEEEVSELVSCKHY 120

Query: 188 FHRVCLEKWLDYWNLTCPLCRT 209
           FH  CL+KW    + TCPLCR+
Sbjct: 121 FHSACLDKWFGNNHTTCPLCRS 131

[Close]
BLAST of Cp4.1LG16g03610 vs. TAIR10
Match: AT3G61460.1 (AT3G61460.1 brassinosteroid-responsive RING-H2)

HSP 1 Score: 74.7 bits (182), Expect = 7.9e-14
Identity = 47/140 (33.57%), Postives = 73/140 (52.14%), Query Frame = 1 

Query: 77  SEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSIENASESIEFHLNPN 136
           +E  L  + V T   +   + IV SI   +G+        + PD     +   E     +
Sbjct: 8   TEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIPETRSPFS 67

Query: 137 GSYIEEFRSRIPAILFNKV-HSCKLLEHDCSVCLTQFAPDSEINHL-SCGHLFHRVCLEK 196
              I E    +P I F ++ +S + L  +C+VCL +F  + EI  L +C H+FHR CL++
Sbjct: 68  ALLIREI---LPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDR 127

Query: 197 WLDYWNLTCPLCRTPFMPEE 215
           W+D+   TCPLCRTPF+P+E
Sbjct: 128 WMDHDQKTCPLCRTPFVPDE 144

[Close]
BLAST of Cp4.1LG16g03610 vs. TAIR10
Match: AT4G11370.1 (AT4G11370.1 RING-H2 finger A1A)

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-12
Identity = 42/133 (31.58%), Postives = 67/133 (50.38%), Query Frame = 1 

Query: 92  ISIFKGIVRSILHVVGIHLSSPTLPSSPDSIENASESIEFH-LNPNGSYIEEFRSRIPAI 151
           I  F+ IV ++   +G       LP   D  E ++  +  H L+ + S   E    IP +
Sbjct: 24  IGFFRDIVDALCPYIG-------LPRFLDHNETSAPDLTRHALSTSASLANEL---IPVV 83

Query: 152 LFNKVHSCKLLEHDCSVCLTQFAPDSEINHL-SCGHLFHRVCLEKWL-DYWNLTCPLCRT 211
            F+ + +    E  C+VCL+ F  D ++  L  CGH+FH  CL++W+ DY  + CP+CR 
Sbjct: 84  RFSDLPTDP--EDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWIVDYNKMKCPVCRH 143

Query: 212 PFMPEEDTASCFW 222
            F+P+E      W
Sbjct: 144 RFLPKEKYTQSDW 144

[Close]
BLAST of Cp4.1LG16g03610 vs. TAIR10
Match: AT4G11360.1 (AT4G11360.1 RING-H2 finger A1B)

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-12
Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 1 

Query: 85  LVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSIENA-SESIEFHLNPNGSYIEEF 144
           ++ T   I  F+ +V ++   +G       LPS  D  E + S+     L+ + +   E 
Sbjct: 16  VLKTLYVIGFFRDMVDALCPYIG-------LPSFLDHNETSRSDPTRLALSTSATLANEL 75

Query: 145 RSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHL-SCGHLFHRVCLEKWL-DYWNL 204
              IP + F+ + +    E  C+VCL+ F  D +I  L  CGH+FH  CL++W+ D   +
Sbjct: 76  ---IPVVRFSDLLTDP--EDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKI 135

Query: 205 TCPLCRTPFMPEEDTASCFW 222
           TCP+CR  F+PEE +    W
Sbjct: 136 TCPICRNRFLPEEKSTPFDW 143

[Close]
BLAST of Cp4.1LG16g03610 vs. NCBI nr
Match: gi|449444454|ref|XP_004139989.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 3.9e-79
Identity = 146/155 (94.19%), Postives = 149/155 (96.13%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS-PTLPSSPDSIENAS 127
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS PTLPSSPDS+ENA 
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 128 ESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHL 187
           ESIEFHLNPNGSYIEEFRSRIPAILF+KV SCK LEHDCSVCLTQF P+SEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 188 FHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW 222
           FHRVCLEKWLDYWNLTCPLCRTP MPEEDTASCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 155

[Close]
BLAST of Cp4.1LG16g03610 vs. NCBI nr
Match: gi|659094560|ref|XP_008448128.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo])

HSP 1 Score: 297.4 bits (760), Expect = 2.1e-77
Identity = 144/156 (92.31%), Postives = 147/156 (94.23%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSP--TLPSSPDSIENA 127
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSS   TLPSSPDS+ENA
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSSATLPSSPDSMENA 60

Query: 128 SESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGH 187
            ESIEFHLNPNGSYIEEFRSRIPAILF+KV SCK LEHDCSVCLTQF P+SEINHLSCGH
Sbjct: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120

Query: 188 LFHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW 222
           LFH VCLEKWLDYWNLTCPLCRTP MPEEDTASCFW
Sbjct: 121 LFHSVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156

[Close]
BLAST of Cp4.1LG16g03610 vs. NCBI nr
Match: gi|590712545|ref|XP_007049410.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 241.1 bits (614), Expect = 1.8e-60
Identity = 116/154 (75.32%), Postives = 133/154 (86.36%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSIENASE 127
           MGLSSLPAPSEGVL ++LVNTALSISI KGI+RSILH+VGIHLSS +  S+ DS+EN SE
Sbjct: 1   MGLSSLPAPSEGVLCILLVNTALSISIVKGIIRSILHIVGIHLSSSS--SASDSVENPSE 60

Query: 128 SIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHLF 187
           S +FHL+ + SYI+EFRSR PAI F+ V SCK  EHDCSVCLTQF P+SEIN LSCGHLF
Sbjct: 61  SFDFHLSTSDSYIDEFRSRTPAIRFDAVCSCKRPEHDCSVCLTQFEPESEINRLSCGHLF 120

Query: 188 HRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW 222
           H+VCLEKWL YWN+TCPLCRTP +PEE+ ASCFW
Sbjct: 121 HKVCLEKWLKYWNVTCPLCRTPLLPEEE-ASCFW 151

[Close]
BLAST of Cp4.1LG16g03610 vs. NCBI nr
Match: gi|358249140|ref|NP_001240255.1| (uncharacterized protein LOC100786803 [Glycine max])

HSP 1 Score: 240.4 bits (612), Expect = 3.1e-60
Identity = 118/155 (76.13%), Postives = 129/155 (83.23%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSP--TLPSSPDSIENA 127
           MGLSSLPAPSEGVL V+LVNT LSISIFKGIVR+ILH+VGIHLSS   T PSSPD    A
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSSSTSPSSPDPSLTA 60

Query: 128 SESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGH 187
            ES EFHL+P+ SYIEEFRSR P + F+ V  CK  EHDCSVCLTQF P+SEIN LSCGH
Sbjct: 61  PESFEFHLSPSESYIEEFRSRTPTLRFDSVCCCKQPEHDCSVCLTQFEPESEINRLSCGH 120

Query: 188 LFHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCF 221
           LFH+VCLEKWLDYWN+TCPLCRTP MPE+DT  CF
Sbjct: 121 LFHKVCLEKWLDYWNITCPLCRTPLMPEDDT-PCF 154

[Close]
BLAST of Cp4.1LG16g03610 vs. NCBI nr
Match: gi|950986358|ref|XP_014503551.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Vigna radiata var. radiata])

HSP 1 Score: 239.2 bits (609), Expect = 6.9e-60
Identity = 116/154 (75.32%), Postives = 128/154 (83.12%), Query Frame = 1 

Query: 68  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTL-PSSPDSIENAS 127
           MGLSSLPAPSEGVL V+LVNT LSISIFKGIVR+ILH+VGIHLSS T  PSSPD  +   
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSTTSPSSPDPYQAPP 60

Query: 128 ESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHL 187
           ES EFHL+P+ SYIEEFRSR P + F+ V  CK  EHDCSVCLTQF P+SEIN LSCGHL
Sbjct: 61  ESFEFHLSPSESYIEEFRSRTPTLRFDSVCCCKRPEHDCSVCLTQFEPESEINRLSCGHL 120

Query: 188 FHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCF 221
           FH+ CLEKWLDYWN+TCPLCRTP MPE+DT  CF
Sbjct: 121 FHKACLEKWLDYWNITCPLCRTPLMPEDDT-PCF 153

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g03610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
XERIC_ARATH2.0e-4359.38Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE... [more]
RHA1B_ARATH7.7e-1131.43E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1[more]
RHA1A_ARATH7.7e-1131.58Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana GN=RHA1A PE=2... [more]
RHA2B_ARATH2.9e-1048.98E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2[more]
RHA2A_ARATH1.5e-0939.71E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1[more]
BLAST of Cp4.1LG16g03610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAU4_CUCSA2.7e-7994.19Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1[more]
A0A061DMB3_THECC1.3e-6075.32RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_002456 PE=4 S... [more]
C6TE74_SOYBN2.2e-6076.13Uncharacterized protein OS=Glycine max GN=GLYMA_02G223600 PE=2 SV=1[more]
A0A0B2SHI0_GLYSO2.2e-6076.13Putative E3 ubiquitin-protein ligase RHA2B OS=Glycine soja GN=glysoja_022823 PE=... [more]
A0A0S3R2C1_PHAAN4.8e-6075.32Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G250100 PE=... [more]
BLAST of Cp4.1LG16g03610 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G04240.11.1e-4459.38 RING/U-box superfamily protein[more]
AT1G67856.11.2e-1432.39 RING/U-box superfamily protein[more]
AT3G61460.17.9e-1433.57 brassinosteroid-responsive RING-H2[more]
AT4G11370.14.3e-1231.58 RING-H2 finger A1A[more]
AT4G11360.14.3e-1231.43 RING-H2 finger A1B[more]
BLAST of Cp4.1LG16g03610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444454|ref|XP_004139989.1|3.9e-7994.19PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus][more]
gi|659094560|ref|XP_008448128.1|2.1e-7792.31PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo][more]
gi|590712545|ref|XP_007049410.1|1.8e-6075.32RING/U-box superfamily protein, putative [Theobroma cacao][more]
gi|358249140|ref|NP_001240255.1|3.1e-6076.13uncharacterized protein LOC100786803 [Glycine max][more]
gi|950986358|ref|XP_014503551.1|6.9e-6075.32PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Vigna radiata var. radia... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0009687 abscisic acid metabolic process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016874 ligase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g03610.1Cp4.1LG16g03610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 164..207
score: 2.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 165..206
score: 4.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 165..207
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 162..209
score: 6.9
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 154..212
score: 2.0
NoneNo IPR availablePANTHERPTHR14155:SF184SUBFAMILY NOT NAMEDcoord: 154..212
score: 2.0
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 155..213
score: 5.82

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g03610Cucsa.120170Cucumber (Gy14) v1cgycpeB0291
Cp4.1LG16g03610CmaCh11G013060Cucurbita maxima (Rimu)cmacpeB123
Cp4.1LG16g03610CmaCh20G007060Cucurbita maxima (Rimu)cmacpeB565
Cp4.1LG16g03610CmoCh11G018160Cucurbita moschata (Rifu)cmocpeB099
Cp4.1LG16g03610CmoCh20G006970Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g03610Cla006876Watermelon (97103) v1cpewmB301
Cp4.1LG16g03610Csa6G113550Cucumber (Chinese Long) v2cpecuB285
Cp4.1LG16g03610MELO3C013454Melon (DHL92) v3.5.1cpemeB257
Cp4.1LG16g03610CSPI06G09350Wild cucumber (PI 183967)cpecpiB287
Cp4.1LG16g03610Lsi10G000360Bottle gourd (USVL1VR-Ls)cpelsiB229
Cp4.1LG16g03610MELO3C013454.2Melon (DHL92) v3.6.1cpemedB302
Cp4.1LG16g03610CsaV3_6G009740Cucumber (Chinese Long) v3cpecucB0352
Cp4.1LG16g03610CsGy6G009420Cucumber (Gy14) v2cgybcpeB759
Cp4.1LG16g03610Carg16124Silver-seed gourdcarcpeB0485
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG16g03610Cp4.1LG05g13760Cucurbita pepo (Zucchini)cpecpeB311
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g03610Silver-seed gourdcarcpeB0282
Cp4.1LG16g03610Silver-seed gourdcarcpeB1190
Cp4.1LG16g03610Silver-seed gourdcarcpeB1482
Cp4.1LG16g03610Cucumber (Chinese Long) v3cpecucB0361
Cp4.1LG16g03610Cucumber (Chinese Long) v3cpecucB0367
Cp4.1LG16g03610Wax gourdcpewgoB0349
Cp4.1LG16g03610Wax gourdcpewgoB0355
Cp4.1LG16g03610Cucumber (Gy14) v1cgycpeB0289
Cp4.1LG16g03610Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG16g03610Cucurbita pepo (Zucchini)cpecpeB304
Cp4.1LG16g03610Cucumber (Gy14) v1cgycpeB0207
Cp4.1LG16g03610Cucurbita maxima (Rimu)cmacpeB525
Cp4.1LG16g03610Cucurbita maxima (Rimu)cmacpeB621
Cp4.1LG16g03610Cucurbita moschata (Rifu)cmocpeB483
Cp4.1LG16g03610Cucurbita moschata (Rifu)cmocpeB571
Cp4.1LG16g03610Wild cucumber (PI 183967)cpecpiB294
Cp4.1LG16g03610Wild cucumber (PI 183967)cpecpiB301
Cp4.1LG16g03610Cucumber (Chinese Long) v2cpecuB292
Cp4.1LG16g03610Cucumber (Chinese Long) v2cpecuB298
Cp4.1LG16g03610Bottle gourd (USVL1VR-Ls)cpelsiB221
Cp4.1LG16g03610Bottle gourd (USVL1VR-Ls)cpelsiB232
Cp4.1LG16g03610Watermelon (Charleston Gray)cpewcgB260
Cp4.1LG16g03610Watermelon (Charleston Gray)cpewcgB267
Cp4.1LG16g03610Watermelon (97103) v1cpewmB305
Cp4.1LG16g03610Watermelon (97103) v1cpewmB306
Cp4.1LG16g03610Melon (DHL92) v3.5.1cpemeB251
Cp4.1LG16g03610Cucumber (Gy14) v2cgybcpeB769
Cp4.1LG16g03610Cucumber (Gy14) v2cgybcpeB919
Cp4.1LG16g03610Melon (DHL92) v3.6.1cpemedB296