Cp4.1LG16g00850 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.GCATCCATGTCTCAGAGCACTTCTCGTTTCTCTTTAATTCTCAGAAACTGTGCTCGTCTTAATGCAGTTGTCCAAGCAAAGCAAGCACACGCTCAAATCCTCATCCATGGTTTGATTCCACATTTAACTCTTGTGACAGATCTACTTTTGGTGTATTGCAAATGTGGGGTTCTGCATGACGCCCGCAAGGTGTTTGACAAAATGACTCACAGAAACATGCACTCCTGGAATATCTTGATTGCTTCTTATGTTCATAGTTCTTTACATTTTGATGCAATTAATGTGTTTAACGAGTTTAGGGGCCTTGGTTTTCTGCCTGATCACTATACTTTGCCCCAGATGTTTAAGGTTAGTGTTGGTATAGGAGATGTTTATATGGGGAAGAGACTTCATTGTTGGACAATTAGGCTGGGATTTGAAGGGTATGTTGTGGTAGCCAGTACGGTTTTGGACTTCTATGCCAAATATGGGGTTGTGGGAGATGCTAAGAAGGTGTTTGATAATATGATTTTGAAAGATACAATTTCTTGGAACTCAATGATTTCTGGGTATGGGAGGGCTGGGCTTTATGGAGATGCATTGGATTGTTTCAAGCGCATGCTCTTTGAAGGAGTGAGGATGGATATCATGACAATTCCTAGCGTTTTGAATGCTTGTGGAGGGGAAGGAGATTTGAGAAAAGGTAAAGAAATTCATTGCTTAGTTTTGAAGAGTCAATTATTTGTTGCTGATGTTGCTATTGGGAACTCATTGATTGATATGTATGCAAAGTGTGGAAGCCTGTTTGATGCTGAAGAGGTCTTTAGGAATATGAGTAGCATGAATATTGTTACATGGACAACAATGATATCTTGTTATGGGGCTCATGGGAAAGGAGAGAAATCCTTGGCCCTGTTTAACAAAATGAAGGCTTGTGGAATCCAACCAAATTCTGTAACACTGACAGCCATTTTGGCTAGTTGCAGTCATGCAGGTTACATCAATGAAGGGTGGAGAATTTTCAAGTCTTTTGTTTCAGATTATGAGGTTGAACTGACGGTAGAACATTATGCTTGTGTTGTTGATCTTCTGAGTCGCTTTGGCTTTCTGCAGGAAGCGTTTATGTTGATAAGAAACATGAAACACACCGCCGCAGCAAGCATTTGGGGTGCTCTGCTTTCTGGTTGTATGATGCACAAGAACCTTGAGATAGGAGAAATTGCAGCTAACCAGCTTTTCAAGTTGGAACCTATGAATCCAAGCAATTTTATAGCTTTGATTGGTATATATGAATCTCTTGGTATGTCGCATGGCGATTCACTGACTAGAGAGAAGATGAGAGACCTGGGTTTGACGAAACTCCCTGGTTGTAGCTGGATAACCATTGAAGGAGTTGTGCATAAATTCTATGGAGGGGACAAGTCTCATCCTTTGGGGTTGAGAATATTTGAAACGCTAAGTGCAGTAAAACAAGCCAGTGTAAACTGTTAA GCATCCATGTCTCAGAGCACTTCTCGTTTCTCTTTAATTCTCAGAAACTGTGCTCGTCTTAATGCAGTTTTTAGGGGCCTTGGTTTTCTGCCTGATCACTATACTTTGCCCCAGATGTTTAAGATGAGAGACCTGGGTTTGACGAAACTCCCTGGTTGTAGCTGGATAACCATTGAAGGAGTTGTGCATAAATTCTATGGAGGGGACAAGTCTCATCCTTTGGGGTTGAGAATATTTGAAACGCTAAGTGCAGTAAAACAAGCCAGTGTAAACTGTTAA GCATCCATGTCTCAGAGCACTTCTCGTTTCTCTTTAATTCTCAGAAACTGTGCTCGTCTTAATGCAGTTTTTAGGGGCCTTGGTTTTCTGCCTGATCACTATACTTTGCCCCAGATGTTTAAGATGAGAGACCTGGGTTTGACGAAACTCCCTGGTTGTAGCTGGATAACCATTGAAGGAGTTGTGCATAAATTCTATGGAGGGGACAAGTCTCATCCTTTGGGGTTGAGAATATTTGAAACGCTAAGTGCAGTAAAACAAGCCAGTGTAAACTGTTAA ASMSQSTSRFSLILRNCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQASVNC
BLAST of Cp4.1LG16g00850 vs. Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2) HSP 1 Score: 58.5 bits (140), Expect = 4.3e-08 Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 4.1e-06 Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 5.3e-06 Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. TrEMBL
Match: A0A0A0LM84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302160 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 4.1e-13 Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. TrEMBL
Match: W9RDY9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024932 PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 1.9e-10 Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. TrEMBL
Match: A5AEG7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019119 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08 Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. TrEMBL
Match: D7U4G1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01080 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08 Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. TrEMBL
Match: A0A072USN4_MEDTR (Pentatricopeptide (PPR) repeat protein OS=Medicago truncatula GN=MTR_3g006800 PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 2.6e-07 Identity = 26/34 (76.47%), Postives = 26/34 (76.47%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. TAIR10
Match: AT3G63370.1 (AT3G63370.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 58.5 bits (140), Expect = 2.4e-09 Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. TAIR10
Match: AT3G08820.1 (AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07 Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. TAIR10
Match: AT2G29760.1 (AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07 Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. TAIR10
Match: AT1G20230.1 (AT1G20230.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 50.4 bits (119), Expect = 6.7e-07 Identity = 21/47 (44.68%), Postives = 28/47 (59.57%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. TAIR10
Match: AT3G62890.1 (AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 50.4 bits (119), Expect = 6.7e-07 Identity = 20/47 (42.55%), Postives = 30/47 (63.83%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: gi|659121952|ref|XP_008460899.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Cucumis melo]) HSP 1 Score: 95.5 bits (236), Expect = 5.1e-17 Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: gi|778670206|ref|XP_011649399.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Cucumis sativus]) HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14 Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: gi|700207030|gb|KGN62149.1| (hypothetical protein Csa_2G302160 [Cucumis sativus]) HSP 1 Score: 82.0 bits (201), Expect = 5.9e-13 Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: gi|703100778|ref|XP_010097008.1| (hypothetical protein L484_024932 [Morus notabilis]) HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10 Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1
BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: gi|1009147046|ref|XP_015891199.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like isoform X2 [Ziziphus jujuba]) HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10 Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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