Cp4.1LG16g00850 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG16g00850
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat protein
LocationCp4.1LG16 : 1597922 .. 1599391 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATCCATGTCTCAGAGCACTTCTCGTTTCTCTTTAATTCTCAGAAACTGTGCTCGTCTTAATGCAGTTGTCCAAGCAAAGCAAGCACACGCTCAAATCCTCATCCATGGTTTGATTCCACATTTAACTCTTGTGACAGATCTACTTTTGGTGTATTGCAAATGTGGGGTTCTGCATGACGCCCGCAAGGTGTTTGACAAAATGACTCACAGAAACATGCACTCCTGGAATATCTTGATTGCTTCTTATGTTCATAGTTCTTTACATTTTGATGCAATTAATGTGTTTAACGAGTTTAGGGGCCTTGGTTTTCTGCCTGATCACTATACTTTGCCCCAGATGTTTAAGGTTAGTGTTGGTATAGGAGATGTTTATATGGGGAAGAGACTTCATTGTTGGACAATTAGGCTGGGATTTGAAGGGTATGTTGTGGTAGCCAGTACGGTTTTGGACTTCTATGCCAAATATGGGGTTGTGGGAGATGCTAAGAAGGTGTTTGATAATATGATTTTGAAAGATACAATTTCTTGGAACTCAATGATTTCTGGGTATGGGAGGGCTGGGCTTTATGGAGATGCATTGGATTGTTTCAAGCGCATGCTCTTTGAAGGAGTGAGGATGGATATCATGACAATTCCTAGCGTTTTGAATGCTTGTGGAGGGGAAGGAGATTTGAGAAAAGGTAAAGAAATTCATTGCTTAGTTTTGAAGAGTCAATTATTTGTTGCTGATGTTGCTATTGGGAACTCATTGATTGATATGTATGCAAAGTGTGGAAGCCTGTTTGATGCTGAAGAGGTCTTTAGGAATATGAGTAGCATGAATATTGTTACATGGACAACAATGATATCTTGTTATGGGGCTCATGGGAAAGGAGAGAAATCCTTGGCCCTGTTTAACAAAATGAAGGCTTGTGGAATCCAACCAAATTCTGTAACACTGACAGCCATTTTGGCTAGTTGCAGTCATGCAGGTTACATCAATGAAGGGTGGAGAATTTTCAAGTCTTTTGTTTCAGATTATGAGGTTGAACTGACGGTAGAACATTATGCTTGTGTTGTTGATCTTCTGAGTCGCTTTGGCTTTCTGCAGGAAGCGTTTATGTTGATAAGAAACATGAAACACACCGCCGCAGCAAGCATTTGGGGTGCTCTGCTTTCTGGTTGTATGATGCACAAGAACCTTGAGATAGGAGAAATTGCAGCTAACCAGCTTTTCAAGTTGGAACCTATGAATCCAAGCAATTTTATAGCTTTGATTGGTATATATGAATCTCTTGGTATGTCGCATGGCGATTCACTGACTAGAGAGAAGATGAGAGACCTGGGTTTGACGAAACTCCCTGGTTGTAGCTGGATAACCATTGAAGGAGTTGTGCATAAATTCTATGGAGGGGACAAGTCTCATCCTTTGGGGTTGAGAATATTTGAAACGCTAAGTGCAGTAAAACAAGCCAGTGTAAACTGTTAA

mRNA sequence

GCATCCATGTCTCAGAGCACTTCTCGTTTCTCTTTAATTCTCAGAAACTGTGCTCGTCTTAATGCAGTTTTTAGGGGCCTTGGTTTTCTGCCTGATCACTATACTTTGCCCCAGATGTTTAAGATGAGAGACCTGGGTTTGACGAAACTCCCTGGTTGTAGCTGGATAACCATTGAAGGAGTTGTGCATAAATTCTATGGAGGGGACAAGTCTCATCCTTTGGGGTTGAGAATATTTGAAACGCTAAGTGCAGTAAAACAAGCCAGTGTAAACTGTTAA

Coding sequence (CDS)

GCATCCATGTCTCAGAGCACTTCTCGTTTCTCTTTAATTCTCAGAAACTGTGCTCGTCTTAATGCAGTTTTTAGGGGCCTTGGTTTTCTGCCTGATCACTATACTTTGCCCCAGATGTTTAAGATGAGAGACCTGGGTTTGACGAAACTCCCTGGTTGTAGCTGGATAACCATTGAAGGAGTTGTGCATAAATTCTATGGAGGGGACAAGTCTCATCCTTTGGGGTTGAGAATATTTGAAACGCTAAGTGCAGTAAAACAAGCCAGTGTAAACTGTTAA

Protein sequence

ASMSQSTSRFSLILRNCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQASVNC
BLAST of Cp4.1LG16g00850 vs. Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-08
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAV 86
           KM+  G+ K PGCSWI ++G VHKF   DKSHP    I+E LS V
Sbjct: 815 KMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEV 859

BLAST of Cp4.1LG16g00850 vs. Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.1e-06
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 1

Query: 42  MRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETL 83
           M   G+ K+PG SWI +EG VH+F   DKSHPL  +I+  L
Sbjct: 542 MNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKL 582

BLAST of Cp4.1LG16g00850 vs. Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.3e-06
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1

Query: 42  MRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQ 88
           MR  GL K PGCS I I+G++H+F  GD +HP+  +++  L  V +
Sbjct: 594 MRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVME 639

BLAST of Cp4.1LG16g00850 vs. TrEMBL
Match: A0A0A0LM84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302160 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-13
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L +++  LG    H       KMRDLGLTK+PGCS I I+G+VHKFYGG  SHPL 
Sbjct: 415 NFIALISIYESLGMT--HGVSLTREKMRDLGLTKVPGCSCIIIDGIVHKFYGGGNSHPLA 474

Query: 76  LRIFETLSAVKQAS 90
           LRI E L++V+QA+
Sbjct: 475 LRISEPLNSVRQAA 486

BLAST of Cp4.1LG16g00850 vs. TrEMBL
Match: W9RDY9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024932 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-10
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAV 86
           KM+DLGL K PGCSWI I G +HKFY GD SHPL + I+ETL  +
Sbjct: 438 KMKDLGLVKTPGCSWIIISGTLHKFYQGDHSHPLSVLIYETLDGI 482

BLAST of Cp4.1LG16g00850 vs. TrEMBL
Match: A5AEG7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019119 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAV 86
           KMR+LGL K PGCSWIT+ G VHKFY  D SHP    I+ETL  +
Sbjct: 825 KMRELGLVKTPGCSWITVAGRVHKFYQEDLSHPETQMIYETLHGI 869

BLAST of Cp4.1LG16g00850 vs. TrEMBL
Match: D7U4G1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01080 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAV 86
           KMR+LGL K PGCSWIT+ G VHKFY  D SHP    I+ETL  +
Sbjct: 437 KMRELGLVKTPGCSWITVAGRVHKFYQEDLSHPETQMIYETLHGI 481

BLAST of Cp4.1LG16g00850 vs. TrEMBL
Match: A0A072USN4_MEDTR (Pentatricopeptide (PPR) repeat protein OS=Medicago truncatula GN=MTR_3g006800 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-07
Identity = 26/34 (76.47%), Postives = 26/34 (76.47%), Query Frame = 1

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPL 75
           KMRDLGL K PGCSWI I G  HKFY GD SHPL
Sbjct: 435 KMRDLGLVKTPGCSWINIAGRAHKFYQGDLSHPL 468

BLAST of Cp4.1LG16g00850 vs. TAIR10
Match: AT3G63370.1 (AT3G63370.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-09
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAV 86
           KM+  G+ K PGCSWI ++G VHKF   DKSHP    I+E LS V
Sbjct: 815 KMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEV 859

BLAST of Cp4.1LG16g00850 vs. TAIR10
Match: AT3G08820.1 (AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 1

Query: 42  MRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETL 83
           M   G+ K+PG SWI +EG VH+F   DKSHPL  +I+  L
Sbjct: 542 MNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKL 582

BLAST of Cp4.1LG16g00850 vs. TAIR10
Match: AT2G29760.1 (AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1

Query: 42  MRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQ 88
           MR  GL K PGCS I I+G++H+F  GD +HP+  +++  L  V +
Sbjct: 594 MRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVME 639

BLAST of Cp4.1LG16g00850 vs. TAIR10
Match: AT1G20230.1 (AT1G20230.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 6.7e-07
Identity = 21/47 (44.68%), Postives = 28/47 (59.57%), Query Frame = 1

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQ 88
           KM  LGL K PGCSWI ++  V+    GDKSHP   +I E +  + +
Sbjct: 616 KMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISK 662

BLAST of Cp4.1LG16g00850 vs. TAIR10
Match: AT3G62890.1 (AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 6.7e-07
Identity = 20/47 (42.55%), Postives = 30/47 (63.83%), Query Frame = 1

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQ 88
           +M   G+ K+PGCS++ +EGVVH+F  GD+S     RI+  L  + Q
Sbjct: 429 EMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQ 475

BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: gi|659121952|ref|XP_008460899.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 5.1e-17
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L +++  LG L  H       KMR LGLTK+PGCS ITI+GVVHKFYGG  SHPL 
Sbjct: 415 NFIALISIYESLGML--HGVSVTREKMRGLGLTKVPGCSCITIDGVVHKFYGGGNSHPLA 474

Query: 76  LRIFETLSAVKQASVNC 93
           LRIFETL++V+QA+V+C
Sbjct: 475 LRIFETLNSVRQAAVSC 489

BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: gi|778670206|ref|XP_011649399.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L +++  LG    H       KMRDLGLTK+PGCS I I+G+VHKFYGG  SHPL 
Sbjct: 415 NFIALISIYESLGMT--HGVSLTREKMRDLGLTKVPGCSCIIIDGIVHKFYGGGNSHPLA 474

Query: 76  LRIFETLSAVKQASVNC 93
           LRI E L++V+QA+V+C
Sbjct: 475 LRISEPLNSVRQAAVSC 489

BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: gi|700207030|gb|KGN62149.1| (hypothetical protein Csa_2G302160 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 5.9e-13
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L +++  LG    H       KMRDLGLTK+PGCS I I+G+VHKFYGG  SHPL 
Sbjct: 415 NFIALISIYESLGMT--HGVSLTREKMRDLGLTKVPGCSCIIIDGIVHKFYGGGNSHPLA 474

Query: 76  LRIFETLSAVKQAS 90
           LRI E L++V+QA+
Sbjct: 475 LRISEPLNSVRQAA 486

BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: gi|703100778|ref|XP_010097008.1| (hypothetical protein L484_024932 [Morus notabilis])

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAV 86
           KM+DLGL K PGCSWI I G +HKFY GD SHPL + I+ETL  +
Sbjct: 438 KMKDLGLVKTPGCSWIIISGTLHKFYQGDHSHPLSVLIYETLDGI 482

BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: gi|1009147046|ref|XP_015891199.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L  ++  LG   D  +L ++ KM+DLGL K PGCSWI I G +HKFY GD SHPL 
Sbjct: 254 NYIALCGIYESLGMW-DSVSLIRL-KMKDLGLVKTPGCSWIMISGKIHKFYQGDNSHPLA 313

Query: 76  LRIFETLSAVKQASV 91
           + + +TL  + +A +
Sbjct: 314 VLVCKTLERITKAKL 326

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP296_ARATH4.3e-0855.56Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidop... [more]
PP219_ARATH4.1e-0651.22Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th... [more]
PP175_ARATH5.3e-0643.48Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A0A0LM84_CUCSA4.1e-1354.05Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302160 PE=4 SV=1[more]
W9RDY9_9ROSA1.9e-1064.44Uncharacterized protein OS=Morus notabilis GN=L484_024932 PE=4 SV=1[more]
A5AEG7_VITVI2.3e-0862.22Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019119 PE=4 SV=1[more]
D7U4G1_VITVI2.3e-0862.22Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01080 PE=4 SV=... [more]
A0A072USN4_MEDTR2.6e-0776.47Pentatricopeptide (PPR) repeat protein OS=Medicago truncatula GN=MTR_3g006800 PE... [more]
Match NameE-valueIdentityDescription
AT3G63370.12.4e-0955.56 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G08820.12.3e-0751.22 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G29760.13.0e-0743.48 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G20230.16.7e-0744.68 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G62890.16.7e-0742.55 Pentatricopeptide repeat (PPR) superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659121952|ref|XP_008460899.1|5.1e-1759.74PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-... [more]
gi|778670206|ref|XP_011649399.1|1.1e-1454.55PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Cucumis s... [more]
gi|700207030|gb|KGN62149.1|5.9e-1354.05hypothetical protein Csa_2G302160 [Cucumis sativus][more]
gi|703100778|ref|XP_010097008.1|2.7e-1064.44hypothetical protein L484_024932 [Morus notabilis][more]
gi|1009147046|ref|XP_015891199.1|2.7e-1045.33PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like isoform X2... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g00850.1Cp4.1LG16g00850.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g00850MELO3C034573.2Melon (DHL92) v3.6.1cpemedB305
Cp4.1LG16g00850CsaV3_2G018210Cucumber (Chinese Long) v3cpecucB0335
Cp4.1LG16g00850Bhi10G001333Wax gourdcpewgoB0359
Cp4.1LG16g00850CsGy2G015640Cucumber (Gy14) v2cgybcpeB194
Cp4.1LG16g00850Carg24320Silver-seed gourdcarcpeB1010
The following gene(s) are paralogous to this gene:

None