Cp4.1LG16g00560 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG16g00560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDUF4228 domain protein
LocationCp4.1LG16 : 164535 .. 164918 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTTTGCGCTTCGACGCACACAGCAACGATATCAGCGAATCCGAAGCGCGGAATGAGACTGCATCAACAGCAACAACCAAATCTGGATTCGATCAAGGTGATTCACATGGACGGCTTCATCCAGGAGTTTTCCGATCCAATCAAAGCCTCCAAAATCACATCTCACAACCCTAACTTCCTCCTCTGCAACTCCGACGAAATGTTCATCGGCAGCCGCGTCCCCTCCCTCTCCCCCGACGAAAACCTCCAACTCGGCCAAATCTACTTCCTCCTCCCGCTCTCCCTCGCACAATCGCCTCTCTCCCTCCCCGATCTCTGCAATTTCGCCATTAAGGCCTCCTCTGCTCTTCCCACGCTTCAATCTCCCTGCTTCAGGTAG

mRNA sequence

ATGGGGGTTTGCGCTTCGACGCACACAGCAACGATATCAGCGAATCCGAAGCGCGGAATGAGACTGCATCAACAGCAACAACCAAATCTGGATTCGATCAAGGTGATTCACATGGACGGCTTCATCCAGGAGTTTTCCGATCCAATCAAAGCCTCCAAAATCACATCTCACAACCCTAACTTCCTCCTCTGCAACTCCGACGAAATGTTCATCGGCAGCCGCGTCCCCTCCCTCTCCCCCGACGAAAACCTCCAACTCGGCCAAATCTACTTCCTCCTCCCGCTCTCCCTCGCACAATCGCCTCTCTCCCTCCCCGATCTCTGCAATTTCGCCATTAAGGCCTCCTCTGCTCTTCCCACGCTTCAATCTCCCTGCTTCAGGTAG

Coding sequence (CDS)

ATGGGGGTTTGCGCTTCGACGCACACAGCAACGATATCAGCGAATCCGAAGCGCGGAATGAGACTGCATCAACAGCAACAACCAAATCTGGATTCGATCAAGGTGATTCACATGGACGGCTTCATCCAGGAGTTTTCCGATCCAATCAAAGCCTCCAAAATCACATCTCACAACCCTAACTTCCTCCTCTGCAACTCCGACGAAATGTTCATCGGCAGCCGCGTCCCCTCCCTCTCCCCCGACGAAAACCTCCAACTCGGCCAAATCTACTTCCTCCTCCCGCTCTCCCTCGCACAATCGCCTCTCTCCCTCCCCGATCTCTGCAATTTCGCCATTAAGGCCTCCTCTGCTCTTCCCACGCTTCAATCTCCCTGCTTCAGGTAG

Protein sequence

MGVCASTHTATISANPKRGMRLHQQQQPNLDSIKVIHMDGFIQEFSDPIKASKITSHNPNFLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLPLSLAQSPLSLPDLCNFAIKASSALPTLQSPCFR
BLAST of Cp4.1LG16g00560 vs. TrEMBL
Match: A0A0A0LJJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287070 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.3e-45
Identity = 98/132 (74.24%), Postives = 109/132 (82.58%), Query Frame = 1

Query: 1   MGVCASTHTATISANPKRGMRLHQQQQP-----NLDSIKVIHMDGFIQEFSDPIKASKIT 60
           MGVCAST T  ++ NPK G++  +QQQ      NLDSIKV+HMDGFI+EFSDPIKASKIT
Sbjct: 1   MGVCASTQTP-LTRNPKCGVKFPKQQQQQQQLLNLDSIKVVHMDGFIEEFSDPIKASKIT 60

Query: 61  SHNPNFLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLPLSLAQSPLSLPDLCNFAIKAS 120
           S NPNF LCNS++M IGS VPSLS DENLQ+GQIYFLLPLSLA SPLSLPDLCNFAIKAS
Sbjct: 61  SRNPNFFLCNSEQMLIGSCVPSLSSDENLQMGQIYFLLPLSLAHSPLSLPDLCNFAIKAS 120

Query: 121 SALPTLQSPCFR 128
           SAL  +QS  FR
Sbjct: 121 SALRNIQSSLFR 131

BLAST of Cp4.1LG16g00560 vs. TrEMBL
Match: M5WBZ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023721mg PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-22
Identity = 64/118 (54.24%), Postives = 74/118 (62.71%), Query Frame = 1

Query: 1   MGVCASTHTATISANPKRGMRLHQQQQPNLDSIKVIHMDGFIQEFSDPIKASKITSHNPN 60
           MG CAST T T   N  RG            S  VIH+DG +QE   P +A  ITS NPN
Sbjct: 1   MGACASTPTRT--RNGSRGGPAGSDMIRRAPSSIVIHVDGRMQELKLPTQAKHITSQNPN 60

Query: 61  FLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLPLSLAQSPLSLPDLCNFAIKASSAL 119
             LCNS+ M +G+ VP++  +E LQ GQIYFLLPL  AQ PLSLPDLC  AIKA+SAL
Sbjct: 61  HFLCNSETMSVGTCVPNVPEEEELQPGQIYFLLPLCEAQKPLSLPDLCALAIKAASAL 116

BLAST of Cp4.1LG16g00560 vs. TrEMBL
Match: B9S8S1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0604200 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 61/125 (48.80%), Postives = 78/125 (62.40%), Query Frame = 1

Query: 1   MGVCASTHTATISANPKRGMRLHQQQ-------QPNLDSIKVIHMDGFIQEFSDPIKASK 60
           MG+CAS+     S N K G R  +Q          +  +I VIH DG +Q      KA K
Sbjct: 1   MGLCASSPIGKGSENQKTGSRNTKQHYYYSSSSSSSSTTIMVIHGDGKLQVLKQATKARK 60

Query: 61  ITSHNPNFLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLPLSLAQSPLSLPDLCNFAIK 119
           I S NPN+ LC+S+ M IG+ VP +  DE+LQ+GQIYFLLPLS ++ PL LPDLC  A+K
Sbjct: 61  IRSQNPNYFLCSSESMSIGTCVPHMQDDEDLQMGQIYFLLPLSQSRKPLLLPDLCALAVK 120

BLAST of Cp4.1LG16g00560 vs. TrEMBL
Match: W9RBP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026971 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 1

Query: 1   MGVCASTHTATISANPKRGMRLHQQQQPNLDSIKVIHMDGFIQEFSDPIKASKITSHNPN 60
           MG+CAS    T  A     M L   Q    ++ ++IH +G +QE+  P+K+ ++ S NPN
Sbjct: 1   MGICASLQYTTNKAR----MSLINWQ----NATQIIHFEGKLQEYIHPVKSGQVLSQNPN 60

Query: 61  FLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLPLSLAQSPLSLPDLCNFAIKASSAL 119
             LC+S+ MF+G+ VP L  +E LQ GQIYFLLPLS A++PLSL DLC  AIKASSAL
Sbjct: 61  CFLCSSESMFVGAHVPQLPTNEELQPGQIYFLLPLSQAKTPLSLQDLCALAIKASSAL 110

BLAST of Cp4.1LG16g00560 vs. TrEMBL
Match: A0A067EMI2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046460mg PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-21
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1

Query: 35  VIHMDGFIQEFSDPIKASKITSHNPNFLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLP 94
           +IH+DG +QEF  PIKA  I S NPN  LC+S+ MFIGS+VP L  DE LQ+GQIYFL+P
Sbjct: 28  IIHLDGRLQEFKQPIKAIDILSQNPNCFLCSSESMFIGSQVPRLPEDEELQVGQIYFLMP 87

Query: 95  LSLAQSPLSLPDLCNFAIKASSAL 119
           LS +Q+ L+L +LC+ AIKASSA+
Sbjct: 88  LSKSQATLTLQELCSLAIKASSAI 111

BLAST of Cp4.1LG16g00560 vs. TAIR10
Match: AT5G66580.1 (AT5G66580.1 unknown protein)

HSP 1 Score: 82.0 bits (201), Expect = 2.9e-16
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1

Query: 31  DSIKVIHMDGFIQEFSDPIKASKITSHNPNFLLCNSDEMFIGSRVPSLSPDENLQLGQIY 90
           DS K+I +DG +QEFS P+K  +I   NP   +CNSDEM     V +++ +E L+ GQ+Y
Sbjct: 13  DSAKLILLDGTLQEFSSPVKVWQILQKNPTSFVCNSDEMDFDDAVSAVAGNEELRSGQLY 72

Query: 91  FLLPLSLAQSPLSLPDLCNFAIKASSAL 119
           F+LPL+    PL   ++   A+KASSAL
Sbjct: 73  FVLPLTWLNHPLRAEEMAALAVKASSAL 100

BLAST of Cp4.1LG16g00560 vs. TAIR10
Match: AT4G37240.1 (AT4G37240.1 unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 4.1e-15
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1

Query: 1   MGVCASTHTATISANPKRGMRLHQQQQPNLDSIKVIHMDGFIQEFSDPIKASKITSHNPN 60
           MG+C+S+ +  ++                  + K+I  DG + EF++P+K   +    P 
Sbjct: 1   MGICSSSESTQVA------------------TAKLILQDGRMMEFANPVKVGYVLLKYPM 60

Query: 61  FLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLPLSLAQSPLSLPDLCNFAIKASSAL 119
             +CNSD+M     V ++S DE LQLGQIYF LPL   + PL   ++   A+KASSAL
Sbjct: 61  CFICNSDDMDFDDAVAAISADEELQLGQIYFALPLCWLRQPLKAEEMAALAVKASSAL 100

BLAST of Cp4.1LG16g00560 vs. TAIR10
Match: AT2G23690.1 (AT2G23690.1 unknown protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 1

Query: 1   MGVCASTHTATISANPKRGMRLHQQQQPNLDSIKVIHMDGFIQEFSDPIKASKITSHNPN 60
           MG+C+S  +  ++                  + K+I  DG + EF+ P+K   +   NP 
Sbjct: 1   MGICSSYESTQVA------------------TAKLILHDGRMMEFTSPVKVGYVLQKNPM 60

Query: 61  FLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLPLSLAQSPLSLPDLCNFAIKASSALPT 120
             +CNSD+M   + V ++S DE  QLGQ+YF LPLS     L   ++   A+KASSAL  
Sbjct: 61  CFICNSDDMDFDNVVSAISADEEFQLGQLYFALPLSSLHHSLKAEEMAALAVKASSALMR 109

Query: 121 LQSPCFR 128
               C R
Sbjct: 121 SGGSCGR 109

BLAST of Cp4.1LG16g00560 vs. TAIR10
Match: AT3G50800.1 (AT3G50800.1 unknown protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 1

Query: 31  DSIKVIHMDGFIQEFSDPIKASKITSHNPNFLLCNSDEMFIGSRVPSLSPDENLQLGQIY 90
           ++ K+I  DG +QEFS P+K  +I   NP   +CNSD+M     V ++   E+L+ G++Y
Sbjct: 13  ETAKLILPDGTLQEFSTPVKVWQILQKNPTSFVCNSDDMDFDDAVLAVPGSEDLRPGELY 72

Query: 91  FLLPLSLAQSPLSLPDLCNFAIKASSAL 119
           F+LPL+    PL   ++   A+KASSAL
Sbjct: 73  FVLPLTWLNHPLRADEMAALAVKASSAL 100

BLAST of Cp4.1LG16g00560 vs. TAIR10
Match: AT1G76600.1 (AT1G76600.1 unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-11
Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 1

Query: 34  KVIHMDGFIQEFSDPIKASKI----------TSHNPNFLLCNSDEMFIGSRVPSLSPDEN 93
           K++ ++G ++E+  P+ AS++          +S + ++ LCNSD ++    +P++  DE 
Sbjct: 20  KIVTINGDLREYDVPVLASQVLESESTSSSSSSSSSSYFLCNSDSLYYDDFIPAIESDEI 79

Query: 94  LQLGQIYFLLPLSLAQSPLSLPDLCNFAIKASSAL 119
           LQ  QIYF+LP+S  Q  LS  D+   A+KAS A+
Sbjct: 80  LQANQIYFVLPISKRQYRLSASDMAALAVKASVAI 114

BLAST of Cp4.1LG16g00560 vs. NCBI nr
Match: gi|700206906|gb|KGN62025.1| (hypothetical protein Csa_2G287070 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-44
Identity = 98/132 (74.24%), Postives = 109/132 (82.58%), Query Frame = 1

Query: 1   MGVCASTHTATISANPKRGMRLHQQQQP-----NLDSIKVIHMDGFIQEFSDPIKASKIT 60
           MGVCAST T  ++ NPK G++  +QQQ      NLDSIKV+HMDGFI+EFSDPIKASKIT
Sbjct: 1   MGVCASTQTP-LTRNPKCGVKFPKQQQQQQQLLNLDSIKVVHMDGFIEEFSDPIKASKIT 60

Query: 61  SHNPNFLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLPLSLAQSPLSLPDLCNFAIKAS 120
           S NPNF LCNS++M IGS VPSLS DENLQ+GQIYFLLPLSLA SPLSLPDLCNFAIKAS
Sbjct: 61  SRNPNFFLCNSEQMLIGSCVPSLSSDENLQMGQIYFLLPLSLAHSPLSLPDLCNFAIKAS 120

Query: 121 SALPTLQSPCFR 128
           SAL  +QS  FR
Sbjct: 121 SALRNIQSSLFR 131

BLAST of Cp4.1LG16g00560 vs. NCBI nr
Match: gi|645273428|ref|XP_008241872.1| (PREDICTED: uncharacterized protein LOC103340255 [Prunus mume])

HSP 1 Score: 113.2 bits (282), Expect = 3.3e-22
Identity = 65/118 (55.08%), Postives = 74/118 (62.71%), Query Frame = 1

Query: 1   MGVCASTHTATISANPKRGMRLHQQQQPNLDSIKVIHMDGFIQEFSDPIKASKITSHNPN 60
           MG CAST T T   N  RG            S  VIH+DG +QE   P +A  ITS NPN
Sbjct: 1   MGACASTPTRT--RNGSRGGPAGSDLIRRATSSIVIHVDGRMQELKLPTQAKHITSQNPN 60

Query: 61  FLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLPLSLAQSPLSLPDLCNFAIKASSAL 119
             LCNS+ M +G+ VP +  +E LQ GQIYFLLPLS AQ PLSLPDLC  AIKA+SAL
Sbjct: 61  HFLCNSETMSVGTCVPHVPEEEELQPGQIYFLLPLSEAQKPLSLPDLCALAIKAASAL 116

BLAST of Cp4.1LG16g00560 vs. NCBI nr
Match: gi|595810563|ref|XP_007203096.1| (hypothetical protein PRUPE_ppa023721mg [Prunus persica])

HSP 1 Score: 112.8 bits (281), Expect = 4.3e-22
Identity = 64/118 (54.24%), Postives = 74/118 (62.71%), Query Frame = 1

Query: 1   MGVCASTHTATISANPKRGMRLHQQQQPNLDSIKVIHMDGFIQEFSDPIKASKITSHNPN 60
           MG CAST T T   N  RG            S  VIH+DG +QE   P +A  ITS NPN
Sbjct: 1   MGACASTPTRT--RNGSRGGPAGSDMIRRAPSSIVIHVDGRMQELKLPTQAKHITSQNPN 60

Query: 61  FLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLPLSLAQSPLSLPDLCNFAIKASSAL 119
             LCNS+ M +G+ VP++  +E LQ GQIYFLLPL  AQ PLSLPDLC  AIKA+SAL
Sbjct: 61  HFLCNSETMSVGTCVPNVPEEEELQPGQIYFLLPLCEAQKPLSLPDLCALAIKAASAL 116

BLAST of Cp4.1LG16g00560 vs. NCBI nr
Match: gi|223538468|gb|EEF40074.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-21
Identity = 61/125 (48.80%), Postives = 78/125 (62.40%), Query Frame = 1

Query: 1   MGVCASTHTATISANPKRGMRLHQQQ-------QPNLDSIKVIHMDGFIQEFSDPIKASK 60
           MG+CAS+     S N K G R  +Q          +  +I VIH DG +Q      KA K
Sbjct: 1   MGLCASSPIGKGSENQKTGSRNTKQHYYYSSSSSSSSTTIMVIHGDGKLQVLKQATKARK 60

Query: 61  ITSHNPNFLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLPLSLAQSPLSLPDLCNFAIK 119
           I S NPN+ LC+S+ M IG+ VP +  DE+LQ+GQIYFLLPLS ++ PL LPDLC  A+K
Sbjct: 61  IRSQNPNYFLCSSESMSIGTCVPHMQDDEDLQMGQIYFLLPLSQSRKPLLLPDLCALAVK 120

BLAST of Cp4.1LG16g00560 vs. NCBI nr
Match: gi|703097883|ref|XP_010096234.1| (hypothetical protein L484_026971 [Morus notabilis])

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-21
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 1

Query: 1   MGVCASTHTATISANPKRGMRLHQQQQPNLDSIKVIHMDGFIQEFSDPIKASKITSHNPN 60
           MG+CAS    T  A     M L   Q    ++ ++IH +G +QE+  P+K+ ++ S NPN
Sbjct: 1   MGICASLQYTTNKAR----MSLINWQ----NATQIIHFEGKLQEYIHPVKSGQVLSQNPN 60

Query: 61  FLLCNSDEMFIGSRVPSLSPDENLQLGQIYFLLPLSLAQSPLSLPDLCNFAIKASSAL 119
             LC+S+ MF+G+ VP L  +E LQ GQIYFLLPLS A++PLSL DLC  AIKASSAL
Sbjct: 61  CFLCSSESMFVGAHVPQLPTNEELQPGQIYFLLPLSQAKTPLSLQDLCALAIKASSAL 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJJ9_CUCSA7.3e-4574.24Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287070 PE=4 SV=1[more]
M5WBZ8_PRUPE3.0e-2254.24Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023721mg PE=4 SV=1[more]
B9S8S1_RICCO1.1e-2148.80Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0604200 PE=4 SV=1[more]
W9RBP1_9ROSA1.9e-2150.00Uncharacterized protein OS=Morus notabilis GN=L484_026971 PE=4 SV=1[more]
A0A067EMI2_CITSI3.3e-2161.90Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046460mg PE=4 S... [more]
Match NameE-valueIdentityDescription
AT5G66580.12.9e-1645.45 unknown protein[more]
AT4G37240.14.1e-1535.59 unknown protein[more]
AT2G23690.11.6e-1433.86 unknown protein[more]
AT3G50800.11.3e-1340.91 unknown protein[more]
AT1G76600.11.6e-1134.74 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700206906|gb|KGN62025.1|1.0e-4474.24hypothetical protein Csa_2G287070 [Cucumis sativus][more]
gi|645273428|ref|XP_008241872.1|3.3e-2255.08PREDICTED: uncharacterized protein LOC103340255 [Prunus mume][more]
gi|595810563|ref|XP_007203096.1|4.3e-2254.24hypothetical protein PRUPE_ppa023721mg [Prunus persica][more]
gi|223538468|gb|EEF40074.1|1.6e-2148.80conserved hypothetical protein [Ricinus communis][more]
gi|703097883|ref|XP_010096234.1|2.8e-2150.00hypothetical protein L484_026971 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025322DUF4228_plant
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g00560.1Cp4.1LG16g00560.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 30..119
score: 4.7
NoneNo IPR availablePANTHERPTHR33052FAMILY NOT NAMEDcoord: 2..120
score: 6.4
NoneNo IPR availablePANTHERPTHR33052:SF21SUBFAMILY NOT NAMEDcoord: 2..120
score: 6.4

The following gene(s) are paralogous to this gene:

None