Cp4.1LG16g00120 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g00120
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG16 : 660602 .. 660817 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATTCTCCCCAATTCTCGACCCCGCTTCCTTCTTCGACTTCGATCTCTCCAATTTCCTCGTTGGCGACGACGACAGCTACGTTGACCAACTCGCCTCCTCCTCGTCGGAGAAGATCACCGGCATGGACAGTGGCGGTAGTAGTGTGGCAGTGGACAGCGGATCTAGCTTCGTGGTTTCATCGGAGCCGTCGCCATCCATGCAAGTGGTTTAA

mRNA sequence

ATGCAATTCTCCCCAATTCTCGACCCCGCTTCCTTCTTCGACTTCGATCTCTCCAATTTCCTCGTTGGCGACGACGACAGCTACGTTGACCAACTCGCCTCCTCCTCGTCGGAGAAGATCACCGGCATGGACAGTGGCGGTAGTAGTGTGGCAGTGGACAGCGGATCTAGCTTCGTGGTTTCATCGGAGCCGTCGCCATCCATGCAAGTGGTTTAA

Coding sequence (CDS)

ATGCAATTCTCCCCAATTCTCGACCCCGCTTCCTTCTTCGACTTCGATCTCTCCAATTTCCTCGTTGGCGACGACGACAGCTACGTTGACCAACTCGCCTCCTCCTCGTCGGAGAAGATCACCGGCATGGACAGTGGCGGTAGTAGTGTGGCAGTGGACAGCGGATCTAGCTTCGTGGTTTCATCGGAGCCGTCGCCATCCATGCAAGTGGTTTAA

Protein sequence

MQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGMDSGGSSVAVDSGSSFVVSSEPSPSMQVV
Homology
[Close]
BLAST of Cp4.1LG16g00120 vs. TrEMBL
Match: A0A0A0LM41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297180 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.0e-09
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1 

Query: 3  FSPILDPASFFDFDLSNFLV-GDDDS-YVDQLASS-----SSEKIT--GMDSGGSSVAVD 62
          F PILDPASFFDF+LS+FL+ GDD++  VDQ+ASS     SSEKIT  G+DSGGSS  +D
Sbjct: 23 FPPILDPASFFDFELSDFLLFGDDNNIVVDQVASSSPSMTSSEKITSGGVDSGGSSTVID 82

Query: 63 SGSSFVVSSEPSPS 68
          +GSS VVSS  + S
Sbjct: 83 TGSSVVVSSSGARS 96

[Close]
BLAST of Cp4.1LG16g00120 vs. NCBI nr
Match: gi|700206975|gb|KGN62094.1| (hypothetical protein Csa_2G297180 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1 

Query: 3  FSPILDPASFFDFDLSNFLV-GDDDS-YVDQLASS-----SSEKIT--GMDSGGSSVAVD 62
          F PILDPASFFDF+LS+FL+ GDD++  VDQ+ASS     SSEKIT  G+DSGGSS  +D
Sbjct: 23 FPPILDPASFFDFELSDFLLFGDDNNIVVDQVASSSPSMTSSEKITSGGVDSGGSSTVID 82

Query: 63 SGSSFVVSSEPSPS 68
          +GSS VVSS  + S
Sbjct: 83 TGSSVVVSSSGARS 96

[Close]
BLAST of Cp4.1LG16g00120 vs. NCBI nr
Match: gi|449461443|ref|XP_004148451.1| (PREDICTED: probable WRKY transcription factor 51 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1 

Query: 3  FSPILDPASFFDFDLSNFLV-GDDDS-YVDQLASS-----SSEKIT--GMDSGGSSVAVD 62
          F PILDPASFFDF+LS+FL+ GDD++  VDQ+ASS     SSEKIT  G+DSGGSS  +D
Sbjct: 23 FPPILDPASFFDFELSDFLLFGDDNNIVVDQVASSSPSMTSSEKITSGGVDSGGSSTVID 82

Query: 63 SGSSFVVSSEPSPSMQV 71
          +GSS VVSS  + +  +
Sbjct: 83 TGSSVVVSSSGASTTSI 99

[Close]
BLAST of Cp4.1LG16g00120 vs. NCBI nr
Match: gi|659116106|ref|XP_008457906.1| (PREDICTED: probable WRKY transcription factor 51 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 1 

Query: 3   FSPILDPASFFDFDLSNFLVGDD------DSYVDQLASS-----SSEKIT---GMDSGGS 62
           F PILDPASFFDF+LS+FL+ DD      ++ VDQ ASS     SSEKIT   G+DS GS
Sbjct: 27  FPPILDPASFFDFELSDFLLFDDNNNNNNNNIVDQAASSSPSMTSSEKITGGGGVDSSGS 86

Query: 63  SVAVDSGSSFVVSSEPS 66
           S  +D+GSS VVSS  S
Sbjct: 87  STVIDTGSSIVVSSGAS 103

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g00120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g00120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM41_CUCSA8.0e-0963.51Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297180 PE=4 SV=1[more]
BLAST of Cp4.1LG16g00120 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g00120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206975|gb|KGN62094.1|1.2e-0863.51hypothetical protein Csa_2G297180 [Cucumis sativus][more]
gi|449461443|ref|XP_004148451.1|1.2e-0859.74PREDICTED: probable WRKY transcription factor 51 [Cucumis sativus][more]
gi|659116106|ref|XP_008457906.1|1.3e-0758.44PREDICTED: probable WRKY transcription factor 51 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0009536 plastid
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g00120.1Cp4.1LG16g00120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g00120CmaCh20G011070Cucurbita maxima (Rimu)cmacpeB565
Cp4.1LG16g00120CmoCh20G011370Cucurbita moschata (Rifu)cmocpeB517
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g00120Cucurbita pepo (Zucchini)cpecpeB068
Cp4.1LG16g00120Cucurbita pepo (Zucchini)cpecpeB295
Cp4.1LG16g00120Cucurbita pepo (Zucchini)cpecpeB313
Cp4.1LG16g00120Cucumber (Gy14) v1cgycpeB0665
Cp4.1LG16g00120Cucurbita maxima (Rimu)cmacpeB623
Cp4.1LG16g00120Cucurbita maxima (Rimu)cmacpeB629
Cp4.1LG16g00120Cucurbita maxima (Rimu)cmacpeB660
Cp4.1LG16g00120Cucurbita moschata (Rifu)cmocpeB573
Cp4.1LG16g00120Cucurbita moschata (Rifu)cmocpeB578
Cp4.1LG16g00120Wild cucumber (PI 183967)cpecpiB270
Cp4.1LG16g00120Cucumber (Chinese Long) v2cpecuB268
Cp4.1LG16g00120Bottle gourd (USVL1VR-Ls)cpelsiB222
Cp4.1LG16g00120Watermelon (Charleston Gray)cpewcgB268
Cp4.1LG16g00120Watermelon (97103) v1cpewmB284
Cp4.1LG16g00120Watermelon (97103) v1cpewmB288
Cp4.1LG16g00120Melon (DHL92) v3.5.1cpemeB259
Cp4.1LG16g00120Cucumber (Gy14) v2cgybcpeB194
Cp4.1LG16g00120Cucumber (Gy14) v2cgybcpeB774
Cp4.1LG16g00120Melon (DHL92) v3.6.1cpemedB304
Cp4.1LG16g00120Silver-seed gourdcarcpeB0560
Cp4.1LG16g00120Silver-seed gourdcarcpeB0642
Cp4.1LG16g00120Silver-seed gourdcarcpeB1132
Cp4.1LG16g00120Silver-seed gourdcarcpeB1472
Cp4.1LG16g00120Silver-seed gourdcarcpeB1474
Cp4.1LG16g00120Cucumber (Chinese Long) v3cpecucB0335
Cp4.1LG16g00120Cucumber (Chinese Long) v3cpecucB0366
Cp4.1LG16g00120Wax gourdcpewgoB0356