Cp4.1LG16g00070 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g00070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA binding protein, putative
LocationCp4.1LG16 : 792030 .. 792399 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGAACACCGAATTTCATGTTCATTACTATTAGAGCTGCAAAGGTGGCGAATTCCAGCAGAGATTTCTCCGACCAAAACGAATGGCTTCATCATCCTCCTACGTTGTCTGGTCTAGATAGAGACATAGAAACCTCTGTTATCGTCTCGGCTCTGACCCACGTCGTTGCTGGTGAGATCCCTATCGGCGGAGAAAGCGGCGGACCTGGAACTCTCTCCGCCGGTTCATCTTCTTATAATTCCCACAAGAGAGGACGTCAAGACCATCGCTTCGAAGGTACGATAAATTATTTTTTTCGTTCTTTCGTGATATATTCATTCAAACCGTGGATAGTTTGATGGATTGCAGAGCGTATAAACTTGACTCTGTAG

mRNA sequence

TCGAACACCGAATTTCATGTTCATTACTATTAGAGCTGCAAAGGTGGCGAATTCCAGCAGAGATTTCTCCGACCAAAACGAATGGCTTCATCATCCTCCTACGTTGTCTGGTCTAGATAGAGACATAGAAACCTCTGTTATCGTCTCGGCTCTGACCCACGTCGTTGCTGGTGAGATCCCTATCGGCGGAGAAAGCGGCGGACCTGGAACTCTCTCCGCCGGTTCATCTTCTTATAATTCCCACAAGAGAGGACGTCAAGACCATCGCTTCGAAGAGCGTATAAACTTGACTCTGTAG

Coding sequence (CDS)

ATGTTCATTACTATTAGAGCTGCAAAGGTGGCGAATTCCAGCAGAGATTTCTCCGACCAAAACGAATGGCTTCATCATCCTCCTACGTTGTCTGGTCTAGATAGAGACATAGAAACCTCTGTTATCGTCTCGGCTCTGACCCACGTCGTTGCTGGTGAGATCCCTATCGGCGGAGAAAGCGGCGGACCTGGAACTCTCTCCGCCGGTTCATCTTCTTATAATTCCCACAAGAGAGGACGTCAAGACCATCGCTTCGAAGAGCGTATAAACTTGACTCTGTAG

Protein sequence

MFITIRAAKVANSSRDFSDQNEWLHHPPTLSGLDRDIETSVIVSALTHVVAGEIPIGGESGGPGTLSAGSSSYNSHKRGRQDHRFEERINLTL
Homology
[Close]
BLAST of Cp4.1LG16g00070 vs. TrEMBL
Match: A0A0A0LJY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297760 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.0e-11
Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 1 

Query: 3  ITIRAAKVANS-SRDF-SDQNEWLHHPPT-LSGLDRDIETSVIVSALTHVVAG-EIPIGG 62
          I +   KVANS SRDF SDQNEWLH   T  SGL+R+ ETSVIVS LT VV G ++   G
Sbjct: 4  IIVNNPKVANSNSRDFYSDQNEWLHQYSTAFSGLNREEETSVIVSTLTQVVVGDQVSPSG 63

Query: 63 ESGGPG---TLSAGSSS---YNSHKRGRQDHRFEER 89
           +GG G   TLS GSSS    NSHKRGRQ    +++
Sbjct: 64 GNGGAGVGRTLSTGSSSSSYSNSHKRGRQQDLVDDQ 99

[Close]
BLAST of Cp4.1LG16g00070 vs. TAIR10
Match: AT5G64750.1 (AT5G64750.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.6e-06
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 1 

Query: 30  LSGLDRDIETSVIVSALTHVVAGEIPI----GGESGGPGTLSAGSSSYNSHKR 79
           +SG  R++E S IVSALTHVVAG +P     GGE  G GT ++ SSS    +R
Sbjct: 64  ISGFSREMEMSAIVSALTHVVAGNVPQHQQGGGEGSGEGTSNSSSSSGQKRRR 116

[Close]
BLAST of Cp4.1LG16g00070 vs. NCBI nr
Match: gi|659116128|ref|XP_008457918.1| (PREDICTED: ethylene-responsive transcription factor ERF110-like [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 55/85 (64.71%), Postives = 58/85 (68.24%), Query Frame = 1 

Query: 9  KVANSS-RDF-SDQNEWLHHPPT-LSGLDRDIETSVIVSALTHVVAGE--IPIGGESG-- 68
          KVANSS RDF SDQNEWLH   T  SGL+R+ ETSVIVSALT VV G+   P GG     
Sbjct: 10 KVANSSSRDFYSDQNEWLHQYSTSFSGLNREEETSVIVSALTQVVVGDQVSPRGGSGSGG 69

Query: 69 --GPGTLSAGSSS---YNSHKRGRQ 82
            G GTLS GSSS    NSHKRGRQ
Sbjct: 70 GVGSGTLSTGSSSSSYNNSHKRGRQ 94

[Close]
BLAST of Cp4.1LG16g00070 vs. NCBI nr
Match: gi|700206984|gb|KGN62103.1| (hypothetical protein Csa_2G297760 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 7.2e-11
Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 1 

Query: 3  ITIRAAKVANS-SRDF-SDQNEWLHHPPT-LSGLDRDIETSVIVSALTHVVAG-EIPIGG 62
          I +   KVANS SRDF SDQNEWLH   T  SGL+R+ ETSVIVS LT VV G ++   G
Sbjct: 4  IIVNNPKVANSNSRDFYSDQNEWLHQYSTAFSGLNREEETSVIVSTLTQVVVGDQVSPSG 63

Query: 63 ESGGPG---TLSAGSSS---YNSHKRGRQDHRFEER 89
           +GG G   TLS GSSS    NSHKRGRQ    +++
Sbjct: 64 GNGGAGVGRTLSTGSSSSSYSNSHKRGRQQDLVDDQ 99

[Close]
BLAST of Cp4.1LG16g00070 vs. NCBI nr
Match: gi|778674221|ref|XP_011650161.1| (PREDICTED: ethylene-responsive transcription factor ABR1-like [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 7.2e-11
Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 1 

Query: 3  ITIRAAKVANS-SRDF-SDQNEWLHHPPT-LSGLDRDIETSVIVSALTHVVAG-EIPIGG 62
          I +   KVANS SRDF SDQNEWLH   T  SGL+R+ ETSVIVS LT VV G ++   G
Sbjct: 4  IIVNNPKVANSNSRDFYSDQNEWLHQYSTAFSGLNREEETSVIVSTLTQVVVGDQVSPSG 63

Query: 63 ESGGPG---TLSAGSSS---YNSHKRGRQDHRFEER 89
           +GG G   TLS GSSS    NSHKRGRQ    +++
Sbjct: 64 GNGGAGVGRTLSTGSSSSSYSNSHKRGRQQDLVDDQ 99

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g00070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g00070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJY9_CUCSA5.0e-1156.25Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297760 PE=4 SV=1[more]
BLAST of Cp4.1LG16g00070 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G64750.12.6e-0650.94 Integrase-type DNA-binding superfamily protein[more]
BLAST of Cp4.1LG16g00070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116128|ref|XP_008457918.1|3.2e-1164.71PREDICTED: ethylene-responsive transcription factor ERF110-like [Cucumis melo][more]
gi|700206984|gb|KGN62103.1|7.2e-1156.25hypothetical protein Csa_2G297760 [Cucumis sativus][more]
gi|778674221|ref|XP_011650161.1|7.2e-1156.25PREDICTED: ethylene-responsive transcription factor ABR1-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009788 negative regulation of abscisic acid-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g00070.1Cp4.1LG16g00070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g00070CmaCh20G011030Cucurbita maxima (Rimu)cmacpeB565
Cp4.1LG16g00070CmoCh20G011330Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g00070Cla007765Watermelon (97103) v1cpewmB288
Cp4.1LG16g00070ClCG02G000900Watermelon (Charleston Gray)cpewcgB268
Cp4.1LG16g00070Lsi10G006780Bottle gourd (USVL1VR-Ls)cpelsiB222
Cp4.1LG16g00070CsaV3_2G017810Cucumber (Chinese Long) v3cpecucB0335
Cp4.1LG16g00070Bhi10G001891Wax gourdcpewgoB0356
Cp4.1LG16g00070Carg27634Silver-seed gourdcarcpeB0642
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g00070Silver-seed gourdcarcpeB1132
Cp4.1LG16g00070Silver-seed gourdcarcpeB1472
Cp4.1LG16g00070Silver-seed gourdcarcpeB1474
Cp4.1LG16g00070Cucumber (Chinese Long) v3cpecucB0366
Cp4.1LG16g00070Cucurbita pepo (Zucchini)cpecpeB068
Cp4.1LG16g00070Cucurbita pepo (Zucchini)cpecpeB295
Cp4.1LG16g00070Cucurbita pepo (Zucchini)cpecpeB313
Cp4.1LG16g00070Cucumber (Gy14) v1cgycpeB0665
Cp4.1LG16g00070Cucurbita maxima (Rimu)cmacpeB623
Cp4.1LG16g00070Cucurbita maxima (Rimu)cmacpeB629
Cp4.1LG16g00070Cucurbita maxima (Rimu)cmacpeB660
Cp4.1LG16g00070Cucurbita moschata (Rifu)cmocpeB573
Cp4.1LG16g00070Cucurbita moschata (Rifu)cmocpeB578
Cp4.1LG16g00070Wild cucumber (PI 183967)cpecpiB270
Cp4.1LG16g00070Cucumber (Chinese Long) v2cpecuB268
Cp4.1LG16g00070Watermelon (97103) v1cpewmB284
Cp4.1LG16g00070Melon (DHL92) v3.5.1cpemeB259
Cp4.1LG16g00070Cucumber (Gy14) v2cgybcpeB194
Cp4.1LG16g00070Melon (DHL92) v3.6.1cpemedB304