Cp4.1LG15g08730 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g08730
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG15 : 8442101 .. 8443522 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAGAAAAAGGAAGCAACGTTGGCTATCACTAATTATGTTGATCAGGGGCAGAAAAAAGATGATGTTTTAAATCTTGTTAATATTAGATTTGACCCAGAGCAAGTGAAAGACGAAACAAATAATACCCTGAATTACAATTTCGATCAGCGACGAAGTCGATTTGATCTTGCCCGGATGATCATCTTGCATGGTTATCCATTGGGCATGGTTGAGCATGTTGGGTTCAGAGTATTTGTTAAAAATCTGCATCCCCTGTTTGAACTTGTATCATGCAATAGAGTTGAGAGTGATTGTTTGGAAATATATGTGAAAGAGAAACAAAAAGTGAACGAGTTATTGGATAAATTGCCTGGAAAAATCAGCCTCAGTGCTGATATGTGGACTGCCACAGATCATTTGGAATCGTCATACCTGTGTCTTACAGCCCACTACATTGATGAGTCCTGGCAGTTAAATAAGAAGGTTTTGAATTTTATGTTTGTTGATCCTTCTCATACTGAAGATTTGCATTCGGATGCTATCATGAATTGTCTGATGGATTGGGATATTGATAGGAAGTTGTTTTCAATGACATTTGATTGTTCCTCTAACAGTGACTATATATCATTACGAATCAGAGACAGACTATCACAGAATAGGTTCCTATATTGTAATGGTCAATTATTTGATGTTAGCTGTGCGATAGATCTTCTGAATTTGATGGCTCAAGATGCTTTGGAAGCATTATGCGACATTCTCCCTAAAATTCGTGACAGTATTCAATGTATTAAACAGTCTCGAGAAGTGCAAGCTAAGTTCAATGAGATGGCCGAGCAAGTTAAAGTTCAGAGCCAAAAGGGTCTGTCTGTGGACAATCCATCTCAGTGGAACTCAACCTATGCGATGCTCGGAGCAGCTATAGAATATCGAGAAGCATTTTCCCTTTTGCAGGAAAGTGACGTTGGCTACTCAGCATGCCCAACTGAAGAGGAATGGGGTAGGACCTGTGTGATTACAGGCTTTCTGAAGTTCTTCTTTGAAGTGACTAATATTTTAACGAAGACCAACTTTCCTACTTCAAATATATTTTTCCCTGAGCTATGTGACGTACACTTGCAGCTGATGGAATGGTCCAAGAATTCAGATGATTATGTCAAGGCCTTGGCATTCAAGATGCGGACCAAGTTTGAAGAATATTGGGATAAATGTGGGTTGGCTCTAGCAGTTTCTGCCATGTTAGATCCTCGGTTCAAAATGAAGCTTGTAGAGTACTATTATCCACAAATCTATGGCGTTGTTGCTGTACAGAGGATCGATGATGTTGTGAACTGCGTGAAGGCGCTTTACAACGAACATTCGATCTGCTCGCCGTTAGCTTCAATCGATCAGGGTCTTGCCTGGCAAGTTGGTAGTAGTAGTTCAGGGAAGGATGCAAGGGAC

mRNA sequence

GAAAAGAAAAAGGAAGCAACGTTGGCTATCACTAATTATGTTGATCAGGGGCAGAAAAAAGATGATGTTTTAAATCTTGTTAATATTAGATTTGACCCAGAGCAAATGCTTTGGAAGCATTATGCGACATTCTCCCTAAAATTCGTGACAGTATTCAATGCGCTTTACAACGAACATTCGATCTGCTCGCCGTTAGCTTCAATCGATCAGGGTCTTGCCTGGCAAGTTGGTAGTAGTAGTTCAGGGAAGGATGCAAGGGAC

Coding sequence (CDS)

GAAAAGAAAAAGGAAGCAACGTTGGCTATCACTAATTATGTTGATCAGGGGCAGAAAAAAGATGATGTTTTAAATCTTGTTAATATTAGATTTGACCCAGAGCAAATGCTTTGGAAGCATTATGCGACATTCTCCCTAAAATTCGTGACAGTATTCAATGCGCTTTACAACGAACATTCGATCTGCTCGCCGTTAGCTTCAATCGATCAGGGTCTTGCCTGGCAAGTTGGTAGTAGTAGTTCAGGGAAGGATGCAAGGGAC

Protein sequence

EKKKEATLAITNYVDQGQKKDDVLNLVNIRFDPEQMLWKHYATFSLKFVTVFNALYNEHSICSPLASIDQGLAWQVGSSSSGKDARD
Homology
[Close]
BLAST of Cp4.1LG15g08730 vs. TrEMBL
Match: A0A0A0KES0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423350 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-10
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 1   EKKKEATLAITNYVDQGQKKDDVLNLVNIRFDPEQMLWKHYATFSLKF 49
           EKKKEATLAITNYVDQGQKKDDVLNLVNIRFDPEQ+  +   T S  F
Sbjct: 94  EKKKEATLAITNYVDQGQKKDDVLNLVNIRFDPEQVKEETNNTLSYNF 141

[Close]
BLAST of Cp4.1LG15g08730 vs. NCBI nr
Match: gi|778716572|ref|XP_011657561.1| (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 1   EKKKEATLAITNYVDQGQKKDDVLNLVNIRFDPEQMLWKHYATFSLKF 49
           EKKKEATLAITNYVDQGQKKDDVLNLVNIRFDPEQ+  +   T S  F
Sbjct: 76  EKKKEATLAITNYVDQGQKKDDVLNLVNIRFDPEQVKEETNNTLSYNF 123

[Close]
BLAST of Cp4.1LG15g08730 vs. NCBI nr
Match: gi|778716569|ref|XP_011657560.1| (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 1   EKKKEATLAITNYVDQGQKKDDVLNLVNIRFDPEQMLWKHYATFSLKF 49
           EKKKEATLAITNYVDQGQKKDDVLNLVNIRFDPEQ+  +   T S  F
Sbjct: 94  EKKKEATLAITNYVDQGQKKDDVLNLVNIRFDPEQVKEETNNTLSYNF 141

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g08730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g08730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KES0_CUCSA1.4e-1079.17Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423350 PE=4 SV=1[more]
BLAST of Cp4.1LG15g08730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g08730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778716572|ref|XP_011657561.1|2.0e-1079.17PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform ... [more]
gi|778716569|ref|XP_011657560.1|2.0e-1079.17PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like isoform ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g08730.1Cp4.1LG15g08730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g08730MELO3C031104.2Melon (DHL92) v3.6.1cpemedB277
Cp4.1LG15g08730CsaV3_6G037990Cucumber (Chinese Long) v3cpecucB0312
Cp4.1LG15g08730Bhi05G001778Wax gourdcpewgoB0328
Cp4.1LG15g08730CsGy6G022080Cucumber (Gy14) v2cgybcpeB748
Cp4.1LG15g08730Carg04660Silver-seed gourdcarcpeB0541
Cp4.1LG15g08730Carg15691Silver-seed gourdcarcpeB0751
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG15g08730Cp4.1LG04g02480Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g08730Melon (DHL92) v3.6.1cpemedB252
Cp4.1LG15g08730Silver-seed gourdcarcpeB0042
Cp4.1LG15g08730Silver-seed gourdcarcpeB0464
Cp4.1LG15g08730Cucumber (Chinese Long) v3cpecucB0314
Cp4.1LG15g08730Wax gourdcpewgoB0337
Cp4.1LG15g08730Cucurbita pepo (Zucchini)cpecpeB256
Cp4.1LG15g08730Cucurbita pepo (Zucchini)cpecpeB277
Cp4.1LG15g08730Cucumber (Gy14) v1cgycpeB0504
Cp4.1LG15g08730Cucurbita maxima (Rimu)cmacpeB115
Cp4.1LG15g08730Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g08730Cucurbita maxima (Rimu)cmacpeB558
Cp4.1LG15g08730Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g08730Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g08730Cucurbita moschata (Rifu)cmocpeB512
Cp4.1LG15g08730Cucurbita moschata (Rifu)cmocpeB567
Cp4.1LG15g08730Wild cucumber (PI 183967)cpecpiB249
Cp4.1LG15g08730Cucumber (Chinese Long) v2cpecuB247
Cp4.1LG15g08730Bottle gourd (USVL1VR-Ls)cpelsiB198
Cp4.1LG15g08730Bottle gourd (USVL1VR-Ls)cpelsiB201
Cp4.1LG15g08730Watermelon (Charleston Gray)cpewcgB215
Cp4.1LG15g08730Watermelon (Charleston Gray)cpewcgB230
Cp4.1LG15g08730Watermelon (97103) v1cpewmB234
Cp4.1LG15g08730Watermelon (97103) v1cpewmB265
Cp4.1LG15g08730Melon (DHL92) v3.5.1cpemeB211
Cp4.1LG15g08730Melon (DHL92) v3.5.1cpemeB236