Cp4.1LG15g08210 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g08210
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPectinesterase
LocationCp4.1LG15 : 8138361 .. 8140855 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTTTTACCCTTTGCTGCGTGTTTATTTTTCTTCTTCGCCAACGTTTTGGCACTCATTGATCCAGCCCGTTTTAATGCGGTTGTATCATTGGACGGATCGGGAGATTTTAAAAGTATCAGTGAAGCTATAGCAGCCGCTCCGGACAACTCCAATACACGATTTTACATTCGTGTAACCCCTGGTACTTACCGTGGACATCTTGAAATTCCACCGAACAAGAAATTTATTGCTTTGATTGGCGATAATGCACTCACAACCATTATAGTCGACAATAGAAGCCACGGTACTGGATTTTCGACTACTGACTCTGCAACCTTAGGTAATTACTCGTGTTTTATACTTTAATGTATTAATTTATTTGAGCAAAATAAATTTTACCTATTGACGTTAATATTTAACTAAAAAACTTGAACCCATCTCACAATTCATTTTTGCTTTTAAATTAGGCTTTCTTTTAAGTTTATATAATAATATTGTTTAAATCCTTACTAATTTGTTTATTCTTATTTGATGCAGTGGTCAGGGGTCACAATTTCATGGCCCAACATTTAAGTTTTGAGAATTCTGCAGGACCTCAAAACGGGCAAGCAGTTGCTGTCCTTGACTACGCGAAATACACTGTTTATTACGATTGCAGATTTTTAAGTTTTCAAGATACCCTATATTCAAGGGGACAATGCCAATTCTTTAGGGAGTGCGAAGTCTACGGAACCGTAGACTTCATTTTTGGAGATGGACTTGCTGTGTTTCAAGACTGTAACATATATGCTCGGTTACCGAGCGATGAAATCACAGTCACTGCACAGTCCAAGGATCGATCGTGGTGGAAAAGCGGCTTCTCCTTTCAGAACTGTACCGTCACAGTTTCTCCGGAGATAGCCTCCAGTAAGGACAAAGTTAAAATCTATCTTGGTCGGCCATGGAGACAATATTCAACTGTTGTGTTCATGGAGTCATTTTTGGATGACAACGTGCGACCAGAGGGATGGGTATTGTGGGAAGGGGTACCAATAAACAACCTCTTTTATGCTGAGTTCAATAATCGAGGTCCTGGTGCTGACACAACACACCGAGTTAATTGGTCAACTTTTCATGTACTTGATAAACAGTTAGCAAAAAACTTTACCGTAAAATTTTTTATCAACGGGTCAGATTGGTTGCCCGAAACTCATGTACCCTTTAGAACTGGACTTGATGCTTAATGAAATTGGCTTGGTTGGGTATGTTTATATCGATACAAAACTCTTAATTGATCTAAACCAGTAAACTATAACGTATACTGAACATATGTGGGAAAAAAAATAATGTTTACTGTGACTACACAATTTAACCAAACCAACTATATCATAAATAAATTGGTTTTATTTCCATGTTTTGGCCGTAAACCACAAAAAAAATGTTTTCTAACTTAATTTTTCTCTTTGTTTTAAATATTTTTTTGAACCGAATAAGAAATCAAATTTATTATATTTTTTATGTAAGTAAGAATTGATGTGCTTTTTTTTTCTTTCTTTAATCATAATTAATAATTAATTATGATTTGGATGTAACATGCATTTAAAATATATACAATTATTTTTTTATTCAATTATACAAAAATATTATTTAATTAAAGAAAATATTTATGGCTACCATTGACATATGGAAAATAATAACCGACAATTTTTGAATTTATTAAAATTTCGGTTATGAATTGATATATGGAAGGTTATGAATTATTATATGGAAGGAATCCTGTACCTTTAACTAATTTCCAAATAAAGTTTAGGAATTCATTGGTTATAAATTCCTACCATTTCTAAATATGATTATTGTTAAACATGAAGAACATGTCTTCTTCCCTCCCTCTTCTCGCTGTTTTTACCTTNAGATTATTATTGTTAAAGATGAAGAACATGTCTTCTTCCCTCCCGCTTCTCCCTGTTTTTACCCTTCTTTTGCTATCTATTTTCAACCCCTCTATGATCGTCATGGCAGAAGAGAATAGAAGTAGCAACGATAAGTTTGTTCGTGATACTTGCAATAAATTTCAATACGATGAATTGTACAAGCTTTGCTTTCCTGTGATTGATTCAGATCCTCATGAAGATTTGAAATCAAATTTGACAGGTATTCTAATTATATTAGTGAATCATACCATCAGCAATTTCAATGACAACCTTGTTTTCCTTCAAAAAGAGATAAAGTCCGGAAAGCTAGATGCTGAAACAAAATTGATGTATAACAAGTGTTCAGAATCTTTTGGAATGGGATACACTGATTTGCAAGAGTCAATGCACATATTATTGACCCAACCAGGTGCAAACGTGTATGATTTACCGACGATGAGTGTTGATAAACATGTAGGCGTGTGTTTCGATGATTTTGAAGATGACCCTATTCCACCAGAGTGGCAGTCTCGTTACAATACTTCATGGAATTTAATAAGTCTCGTGGCAGAAACAACTAATCTCATTACATGTAATCGTGTAGCCTCATGTATCCCTTGA

mRNA sequence

ATGGCATTTTTACCCTTTGCTGCGTGTTTATTTTTCTTCTTCGCCAACGTTTTGGCACTCATTGATCCAGCCCGTTTTAATGCGGTTGTATCATTGGACGGATCGGGAGATTTTAAAAGTATCAGTGAAGCTATAGCAGCCGCTCCGGACAACTCCAATACACGATTTTACATTCGTGTAACCCCTGGTACTTACCGTGGACATCTTGAAATTCCACCGAACAAGAAATTTATTGCTTTGATTGGCGATAATGCACTCACAACCATTATAGTCGACAATAGAAGCCACGGTACTGGATTTTCGACTACTGACTCTGCAACCTTAGAAGAGAATAGAAGTAGCAACGATAAGTTTGTTCGTGATACTTGCAATAAATTTCAATACGATGAATTGTACAAGCTTTGCTTTCCTGTGATTGATTCAGATCCTCATGAAGATTTGAAATCAAATTTGACAGGTATTCTAATTATATTAGTGAATCATACCATCAGCAATTTCAATGACAACCTTGTTTTCCTTCAAAAAGAGATAAAGTCCGGAAAGCTAGATGCTGAAACAAAATTGATGTATAACAAGTGTTCAGAATCTTTTGGAATGGGATACACTGATTTGCAAGAGTCAATGCACATATTATTGACCCAACCAGGTGCAAACGTGTATGATTTACCGACGATGAGTGTTGATAAACATGTAGGCGTGTGTTTCGATGATTTTGAAGATGACCCTATTCCACCAGAGTGGCAGTCTCGTTACAATACTTCATGGAATTTAATAAGTCTCGTGGCAGAAACAACTAATCTCATTACATGTAATCGTGTAGCCTCATGTATCCCTTGA

Coding sequence (CDS)

ATGGCATTTTTACCCTTTGCTGCGTGTTTATTTTTCTTCTTCGCCAACGTTTTGGCACTCATTGATCCAGCCCGTTTTAATGCGGTTGTATCATTGGACGGATCGGGAGATTTTAAAAGTATCAGTGAAGCTATAGCAGCCGCTCCGGACAACTCCAATACACGATTTTACATTCGTGTAACCCCTGGTACTTACCGTGGACATCTTGAAATTCCACCGAACAAGAAATTTATTGCTTTGATTGGCGATAATGCACTCACAACCATTATAGTCGACAATAGAAGCCACGGTACTGGATTTTCGACTACTGACTCTGCAACCTTAGAAGAGAATAGAAGTAGCAACGATAAGTTTGTTCGTGATACTTGCAATAAATTTCAATACGATGAATTGTACAAGCTTTGCTTTCCTGTGATTGATTCAGATCCTCATGAAGATTTGAAATCAAATTTGACAGGTATTCTAATTATATTAGTGAATCATACCATCAGCAATTTCAATGACAACCTTGTTTTCCTTCAAAAAGAGATAAAGTCCGGAAAGCTAGATGCTGAAACAAAATTGATGTATAACAAGTGTTCAGAATCTTTTGGAATGGGATACACTGATTTGCAAGAGTCAATGCACATATTATTGACCCAACCAGGTGCAAACGTGTATGATTTACCGACGATGAGTGTTGATAAACATGTAGGCGTGTGTTTCGATGATTTTGAAGATGACCCTATTCCACCAGAGTGGCAGTCTCGTTACAATACTTCATGGAATTTAATAAGTCTCGTGGCAGAAACAACTAATCTCATTACATGTAATCGTGTAGCCTCATGTATCCCTTGA

Protein sequence

MAFLPFAACLFFFFANVLALIDPARFNAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNALTTIIVDNRSHGTGFSTTDSATLEENRSSNDKFVRDTCNKFQYDELYKLCFPVIDSDPHEDLKSNLTGILIILVNHTISNFNDNLVFLQKEIKSGKLDAETKLMYNKCSESFGMGYTDLQESMHILLTQPGANVYDLPTMSVDKHVGVCFDDFEDDPIPPEWQSRYNTSWNLISLVAETTNLITCNRVASCIP
Homology
[Close]
BLAST of Cp4.1LG15g08210 vs. Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-14
Identity = 38/82 (46.34%), Postives = 59/82 (71.95%), Query Frame = 1 

Query: 27  NAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNAL 86
           N VV+ DGSGD+K++SEA+AAAP++S TR+ IR+  G YR ++++P  KK I  +GD   
Sbjct: 8   NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRT 67

Query: 87  TTIIVDNRSHGTGFSTTDSATL 109
           +TII  +++   G +T +SAT+
Sbjct: 68  STIITASKNVQDGSTTFNSATV 89

[Close]
BLAST of Cp4.1LG15g08210 vs. Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.7e-12
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 1 

Query: 21  IDPARFNAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIAL 80
           +D  + N VV+ +G+G++ +I EAI+AAP++S TRF I +  G Y  ++EIP  K  I  
Sbjct: 201 VDETKVNLVVAQNGTGNYTTIGEAISAAPNSSETRFVIYIKCGEYFENIEIPREKTMIMF 260

Query: 81  IGDNALTTIIVDNRSHGTGFSTTDSATL 109
           IGD    T+I  NRS+  G++   SAT+
Sbjct: 261 IGDGIGRTVIKANRSYADGWTAFHSATV 288

[Close]
BLAST of Cp4.1LG15g08210 vs. Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 72.4 bits (176), Expect = 8.8e-12
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1 

Query: 27  NAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNAL 86
           NAVV+ DG+GD+++++EA+AAAPD S TR+ I V  GTY+ ++E+  NK  + ++GD   
Sbjct: 233 NAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMY 292

Query: 87  TTIIVDNRSHGTGFSTTDSATL 109
            T I  + +   G +T  SATL
Sbjct: 293 ATTITGSLNVVDGSTTFRSATL 314

[Close]
BLAST of Cp4.1LG15g08210 vs. Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-11
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 27  NAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNAL 86
           N VV+ DG+G FK+++EA+AAAP+NSNTR+ I V  G Y+  ++I   KK + L+GD   
Sbjct: 246 NVVVAKDGTGKFKTVNEAVAAAPENSNTRYVIYVKKGVYKETIDIGKKKKNLMLVGDGKD 305

Query: 87  TTIIVDNRSHGTGFSTTDSATLEEN 112
            TII  + +   G +T  SAT+  N
Sbjct: 306 ATIITGSLNVIDGSTTFRSATVAAN 330

[Close]
BLAST of Cp4.1LG15g08210 vs. Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-11
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1 

Query: 27  NAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNAL 86
           +A V+ DGSG FK+++ A+AAAP+NSN R+ I +  G YR ++E+   KK I  +GD   
Sbjct: 281 DATVAADGSGTFKTVAAAVAAAPENSNKRYVIHIKAGVYRENVEVAKKKKNIMFMGDGRT 340

Query: 87  TTIIVDNRSHGTGFSTTDSATL 109
            TII  +R+   G +T  SAT+
Sbjct: 341 RTIITGSRNVVDGSTTFHSATV 362

[Close]
BLAST of Cp4.1LG15g08210 vs. TrEMBL
Match: A0A0A0LR14_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_1G049450 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 68/108 (62.96%), Postives = 79/108 (73.15%), Query Frame = 1 

Query: 1   MAFLPFAACLFFFFANVLALIDPARFNAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRV 60
           M F     C  F F N++ LI    FN  VSLDGSG+FK IS+AIAAAP+NSNTRFYI V
Sbjct: 1   MLFFFGVPCSLFCFFNLMLLIHSLSFNLTVSLDGSGNFKRISDAIAAAPNNSNTRFYIHV 60

Query: 61  TPGTYRGHLEIPPNKKFIALIGDNALTTIIVDNRSHGTGFSTTDSATL 109
            PGTY   L+IP  KKFIAL+GD+  TTII+DNRS+GTGF T +SATL
Sbjct: 61  APGTYHETLQIPRLKKFIALVGDDPFTTIIIDNRSNGTGFKTNNSATL 108

[Close]
BLAST of Cp4.1LG15g08210 vs. TrEMBL
Match: A0A0A0KNI2_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_5G488760 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.2e-19
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1 

Query: 10  LFFFFANVLALI---DPARFNAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYR 69
           LF  +  V+ ++   D   FN  VSLDG+G+F  I++AIAAAP+ S TRFYI V PGTY+
Sbjct: 9   LFIVYLLVVVIVEFSDCFIFNFTVSLDGTGNFVKINDAIAAAPNFSTTRFYIHVKPGTYK 68

Query: 70  GHLEIPPNKKFIALIGDNALTTIIVDNRSHGTGFSTTDSATLEE 111
             +E+P  K  IALIGD+A TTIIV+NRS+GTG ST  SATL +
Sbjct: 69  EIIEVPYEKTCIALIGDDASTTIIVNNRSNGTGSSTASSATLSK 112

[Close]
BLAST of Cp4.1LG15g08210 vs. TrEMBL
Match: A0A0A0L1M3_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_4G260430 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 56/105 (53.33%), Postives = 73/105 (69.52%), Query Frame = 1 

Query: 10  LFFFFANVLALIDPARFNAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHL 69
           L+     ++   D   FN+ VSLDG+ +F  I++AIAAAP+ S TRFYI V PGTY+  +
Sbjct: 5   LYLLVVVIVEFSDCFSFNSTVSLDGTENFIKINDAIAAAPNFSTTRFYIHVKPGTYQEII 64

Query: 70  EIPPNKKFIALIGDNALTTIIVDNRSHGTGFSTTDSATLEENRSS 115
           E+P  K  IALIGD++ TTIIV+NRS+GTG ST  SATL  N S+
Sbjct: 65  EVPYEKTCIALIGDDSSTTIIVNNRSNGTGSSTASSATLTVNGSN 109

[Close]
BLAST of Cp4.1LG15g08210 vs. TrEMBL
Match: W9QFB9_9ROSA (Pectinesterase OS=Morus notabilis GN=L484_012492 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.9e-14
Identity = 40/86 (46.51%), Postives = 61/86 (70.93%), Query Frame = 1 

Query: 26  FNAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNA 85
           FN +V  D SG+F ++S+A+ AAP NS TR+ IR+ PG Y+  +EI  +  +I+LIGD+ 
Sbjct: 35  FNVIVQKDNSGNFTTVSDAVKAAPKNSKTRYMIRIKPGRYKERVEIESDLTYISLIGDDV 94

Query: 86  LTTIIVDNRSHGTGFSTTDSATLEEN 112
            TTII  +RS+G+GF T ++ TL ++
Sbjct: 95  TTTIITFDRSNGSGFKTNETGTLTDS 120

[Close]
BLAST of Cp4.1LG15g08210 vs. TrEMBL
Match: A0A161WPL5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023371 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 1 

Query: 26  FNAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNA 85
           F+ VV+ DGSG+F  ISEA+AAAPD S+ ++YIR+  GTY  H+ I   K  +  +GD  
Sbjct: 22  FDVVVARDGSGNFDKISEAVAAAPDRSSEKYYIRIKRGTYAEHIRIGTEKTNLVFVGDGM 81

Query: 86  LTTIIVDNRSHGTGFSTTDSATLE 110
             TII ++RS+ +G+S  +SAT++
Sbjct: 82  DVTIITNSRSNHSGYSIFESATVD 105

[Close]
BLAST of Cp4.1LG15g08210 vs. TAIR10
Match: AT4G02320.1 (AT4G02320.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-13
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 1 

Query: 21  IDPARFNAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIAL 80
           +D  + N VV+ +G+G++ +I EAI+AAP++S TRF I +  G Y  ++EIP  K  I  
Sbjct: 201 VDETKVNLVVAQNGTGNYTTIGEAISAAPNSSETRFVIYIKCGEYFENIEIPREKTMIMF 260

Query: 81  IGDNALTTIIVDNRSHGTGFSTTDSATL 109
           IGD    T+I  NRS+  G++   SAT+
Sbjct: 261 IGDGIGRTVIKANRSYADGWTAFHSATV 288

[Close]
BLAST of Cp4.1LG15g08210 vs. TAIR10
Match: AT3G14310.1 (AT3G14310.1 pectin methylesterase 3)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-13
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1 

Query: 27  NAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNAL 86
           +A V+ DGSG FK+++ A+AAAP+NSN R+ I +  G YR ++E+   KK I  +GD   
Sbjct: 281 DATVAADGSGTFKTVAAAVAAAPENSNKRYVIHIKAGVYRENVEVAKKKKNIMFMGDGRT 340

Query: 87  TTIIVDNRSHGTGFSTTDSATL 109
            TII  +R+   G +T  SAT+
Sbjct: 341 RTIITGSRNVVDGSTTFHSATV 362

[Close]
BLAST of Cp4.1LG15g08210 vs. TAIR10
Match: AT1G11580.1 (AT1G11580.1 methylesterase PCR A)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-13
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 27  NAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNAL 86
           N VV+ DG+G FK+++EA+AAAP+NSNTR+ I V  G Y+  ++I   KK + L+GD   
Sbjct: 246 NVVVAKDGTGKFKTVNEAVAAAPENSNTRYVIYVKKGVYKETIDIGKKKKNLMLVGDGKD 305

Query: 87  TTIIVDNRSHGTGFSTTDSATLEEN 112
            TII  + +   G +T  SAT+  N
Sbjct: 306 ATIITGSLNVIDGSTTFRSATVAAN 330

[Close]
BLAST of Cp4.1LG15g08210 vs. TAIR10
Match: AT2G26440.1 (AT2G26440.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 1 

Query: 22  DPARFNAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALI 81
           DP+  + VV+ DG+G+F +I+EAI+ AP+ SN R  I V  G Y  +++IP  K  I LI
Sbjct: 233 DPSE-SLVVAADGTGNFSTINEAISFAPNMSNDRVLIYVKEGVYDENIDIPIYKTNIVLI 292

Query: 82  GDNALTTIIVDNRSHGTGFSTTDSATL 109
           GD +  T I  NRS G G++T  SATL
Sbjct: 293 GDGSDVTFITGNRSVGDGWTTFRSATL 318

[Close]
BLAST of Cp4.1LG15g08210 vs. TAIR10
Match: AT2G47550.1 (AT2G47550.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 68.2 bits (165), Expect = 9.3e-12
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 

Query: 33  DGSGDFKSISEAIAAAP---DNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNALTTI 92
           +G+G+F +I+ AIAAAP   D SN  F I VT G Y  ++E+P NK+++ +IGD    T+
Sbjct: 251 NGTGNFTTINAAIAAAPNKTDGSNGYFLIYVTAGLYEEYVEVPKNKRYVMMIGDGINQTV 310

Query: 93  IVDNRSHGTGFSTTDSAT 108
           I  NRS   G++T +SAT
Sbjct: 311 ITGNRSVVDGWTTFNSAT 328

[Close]
BLAST of Cp4.1LG15g08210 vs. NCBI nr
Match: gi|778657958|ref|XP_004152582.2| (PREDICTED: pectinesterase 2-like [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 68/108 (62.96%), Postives = 79/108 (73.15%), Query Frame = 1 

Query: 1   MAFLPFAACLFFFFANVLALIDPARFNAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRV 60
           M F     C  F F N++ LI    FN  VSLDGSG+FK IS+AIAAAP+NSNTRFYI V
Sbjct: 1   MLFFFGVPCSLFCFFNLMLLIHSLSFNLTVSLDGSGNFKRISDAIAAAPNNSNTRFYIHV 60

Query: 61  TPGTYRGHLEIPPNKKFIALIGDNALTTIIVDNRSHGTGFSTTDSATL 109
            PGTY   L+IP  KKFIAL+GD+  TTII+DNRS+GTGF T +SATL
Sbjct: 61  APGTYHETLQIPRLKKFIALVGDDPFTTIIIDNRSNGTGFKTNNSATL 108

[Close]
BLAST of Cp4.1LG15g08210 vs. NCBI nr
Match: gi|659068775|ref|XP_008446163.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 4.6e-21
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 1 

Query: 32  LDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNALTTIIV 91
           + G  +  +I+ AIAAAPDNSNTRFYIRVTPGTY   L+IPP K FIALIGDNALTTIIV
Sbjct: 5   IKGIDEQLTIAAAIAAAPDNSNTRFYIRVTPGTYHERLQIPPTKTFIALIGDNALTTIIV 64

Query: 92  DNRSHGTGFSTTDSATLEENRSSNDKFV 120
           D+RS+  GF T+DSATL  N    D F+
Sbjct: 65  DDRSNARGFKTSDSATLTVN---GDNFI 89

[Close]
BLAST of Cp4.1LG15g08210 vs. NCBI nr
Match: gi|659068777|ref|XP_008446175.1| (PREDICTED: pectinesterase 2-like [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 4.6e-21
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 1 

Query: 39  KSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNALTTIIVDNRSHGT 98
           ++I+ AIAAAPDNSNTRFYIRVTPGTY   L+IPP K FIALIGDNALTTIIVD+RS+  
Sbjct: 2   ETIAAAIAAAPDNSNTRFYIRVTPGTYHERLQIPPTKTFIALIGDNALTTIIVDDRSNAR 61

Query: 99  GFSTTDSATLEEN 112
           GF T+DSATL  N
Sbjct: 62  GFKTSDSATLTVN 74

[Close]
BLAST of Cp4.1LG15g08210 vs. NCBI nr
Match: gi|778708428|ref|XP_011656190.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 41 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 6.7e-20
Identity = 56/80 (70.00%), Postives = 64/80 (80.00%), Query Frame = 1 

Query: 33  DGSGD-FKSISEAIAAAPDNSNTRFYIRVTPGTYRGHLEIPPNKKFIALIGDNALTTIIV 92
           DGS D FK+I++AIA+ P+N NTRFYI VTPGTY   L+IPP K FIALIGDNALTTIIV
Sbjct: 5   DGSIDHFKTITDAIASVPNNLNTRFYIHVTPGTYHECLQIPPTKTFIALIGDNALTTIIV 64

Query: 93  DNRSHGTGFSTTDSATLEEN 112
           D+RS+  GF T DSATL  N
Sbjct: 65  DDRSNARGFKTIDSATLTVN 84

[Close]
BLAST of Cp4.1LG15g08210 vs. NCBI nr
Match: gi|778708551|ref|XP_011656233.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 5.7e-19
Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 1 

Query: 10  LFFFFANVLALI---DPARFNAVVSLDGSGDFKSISEAIAAAPDNSNTRFYIRVTPGTYR 69
           LF  +  V+ ++   D   FN  VSLDG+G+F  I++AIAAAP+ S TRFYI V PGTY+
Sbjct: 9   LFIVYLLVVVIVEFSDCFIFNFTVSLDGTGNFVKINDAIAAAPNFSTTRFYIHVKPGTYK 68

Query: 70  GHLEIPPNKKFIALIGDNALTTIIVDNRSHGTGFSTTDSATLEEN 112
             +E+P  K  IALIGD+A TTIIV+NRS+GTG ST  SATL  N
Sbjct: 69  EIIEVPYEKTCIALIGDDASTTIIVNNRSNGTGSSTASSATLTVN 113

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g08210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PME_DAUCA1.4e-1446.34Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME40_ARATH6.7e-1242.05Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=P... [more]
PME1_SOLLC8.8e-1243.90Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5[more]
PME18_ARATH1.1e-1144.71Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1... [more]
PME3_ARATH1.1e-1143.90Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 S... [more]
BLAST of Cp4.1LG15g08210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR14_CUCSA1.1e-2662.96Pectinesterase OS=Cucumis sativus GN=Csa_1G049450 PE=4 SV=1[more]
A0A0A0KNI2_CUCSA5.2e-1955.77Pectinesterase OS=Cucumis sativus GN=Csa_5G488760 PE=4 SV=1[more]
A0A0A0L1M3_CUCSA2.0e-1853.33Pectinesterase OS=Cucumis sativus GN=Csa_4G260430 PE=4 SV=1[more]
W9QFB9_9ROSA2.9e-1446.51Pectinesterase OS=Morus notabilis GN=L484_012492 PE=4 SV=1[more]
A0A161WPL5_DAUCA1.6e-1246.43Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023371 PE=4 SV=1[more]
BLAST of Cp4.1LG15g08210 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G02320.13.8e-1342.05 Plant invertase/pectin methylesterase inhibitor superfamily[more]
AT3G14310.16.5e-1343.90 pectin methylesterase 3[more]
AT1G11580.16.5e-1344.71 methylesterase PCR A[more]
AT2G26440.11.1e-1247.13 Plant invertase/pectin methylesterase inhibitor superfamily[more]
AT2G47550.19.3e-1246.15 Plant invertase/pectin methylesterase inhibitor superfamily[more]
BLAST of Cp4.1LG15g08210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778657958|ref|XP_004152582.2|1.6e-2662.96PREDICTED: pectinesterase 2-like [Cucumis sativus][more]
gi|659068775|ref|XP_008446163.1|4.6e-2165.91PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis melo][more]
gi|659068777|ref|XP_008446175.1|4.6e-2175.34PREDICTED: pectinesterase 2-like [Cucumis melo][more]
gi|778708428|ref|XP_011656190.1|6.7e-2070.00PREDICTED: probable pectinesterase/pectinesterase inhibitor 41 [Cucumis sativus][more]
gi|778708551|ref|XP_011656233.1|5.7e-1956.19PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004857enzyme inhibitor activity
GO:0030599pectinesterase activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
IPR006501Pectinesterase_inhib_dom
IPR000070Pectinesterase_cat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042545 cell wall modification
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005618 cell wall
cellular_component GO:0005575 cellular_component
molecular_function GO:0004857 enzyme inhibitor activity
molecular_function GO:0030599 pectinesterase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g08210.1Cp4.1LG15g08210.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 27..110
score: 3.9
IPR006501Pectinesterase inhibitor domainGENE3DG3DSA:1.20.140.40coord: 115..267
score: 5.3
IPR006501Pectinesterase inhibitor domainTIGRFAMsTIGR01614TIGR01614coord: 108..259
score: 3.2
IPR006501Pectinesterase inhibitor domainunknownSSF101148Plant invertase/pectin methylesterase inhibitorcoord: 116..261
score: 6.02
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 25..111
score: 2.69
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 25..111
score: 1.1
NoneNo IPR availablePANTHERPTHR31707FAMILY NOT NAMEDcoord: 18..108
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g08210CmaCh19G009990Cucurbita maxima (Rimu)cmacpeB522
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g08210Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g08210Cucumber (Gy14) v2cgybcpeB915
Cp4.1LG15g08210Melon (DHL92) v3.6.1cpemedB257
Cp4.1LG15g08210Silver-seed gourdcarcpeB0578
Cp4.1LG15g08210Silver-seed gourdcarcpeB1013
Cp4.1LG15g08210Silver-seed gourdcarcpeB1014
Cp4.1LG15g08210Silver-seed gourdcarcpeB1220
Cp4.1LG15g08210Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g08210Cucumber (Chinese Long) v3cpecucB0327
Cp4.1LG15g08210Wax gourdcpewgoB0318
Cp4.1LG15g08210Wax gourdcpewgoB0332
Cp4.1LG15g08210Wax gourdcpewgoB0339
Cp4.1LG15g08210Cucurbita pepo (Zucchini)cpecpeB256
Cp4.1LG15g08210Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG15g08210Cucurbita pepo (Zucchini)cpecpeB271
Cp4.1LG15g08210Cucumber (Gy14) v1cgycpeB0551
Cp4.1LG15g08210Cucurbita maxima (Rimu)cmacpeB121
Cp4.1LG15g08210Cucurbita maxima (Rimu)cmacpeB115
Cp4.1LG15g08210Cucurbita maxima (Rimu)cmacpeB558
Cp4.1LG15g08210Cucurbita moschata (Rifu)cmocpeB097
Cp4.1LG15g08210Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g08210Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g08210Cucurbita moschata (Rifu)cmocpeB512
Cp4.1LG15g08210Wild cucumber (PI 183967)cpecpiB257
Cp4.1LG15g08210Wild cucumber (PI 183967)cpecpiB263
Cp4.1LG15g08210Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g08210Cucumber (Chinese Long) v2cpecuB262
Cp4.1LG15g08210Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g08210Bottle gourd (USVL1VR-Ls)cpelsiB200
Cp4.1LG15g08210Watermelon (Charleston Gray)cpewcgB230
Cp4.1LG15g08210Watermelon (Charleston Gray)cpewcgB241
Cp4.1LG15g08210Watermelon (Charleston Gray)cpewcgB244
Cp4.1LG15g08210Watermelon (97103) v1cpewmB254
Cp4.1LG15g08210Watermelon (97103) v1cpewmB265
Cp4.1LG15g08210Melon (DHL92) v3.5.1cpemeB218