Cp4.1LG15g07610 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g07610
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG15 : 7847547 .. 7848121 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTCTTTTCAAAGTTGGGATCTCGTTTGCGCCGAGCAGTGGACGCGCGACGCGTCTACCAGGAGCAGAGTTTGGAGAGAGTGACGAGTTCGAAGTCGGAATCTGCTTCTCATTGGCGGCCGGCGCTGCCGCCTATATTGGAGGATAGTAAAGGGGCTCGGTTGCCGGTGAAGAAATCCGGCGAAAAGAAGAAAACGTCCAGCCGGCAAGTCCGATCTGTGGCCAAATCGTACGGAAGAGATAGTTACTGGTAATGAAACAAATTAAAAACAGTGGCCAAAGTGATTTAATTATCCTTAATTTTGTGAAATTTGCGGTTTTGGAAGTGTTTCTGAAAATCAATTTTTAGGTTTTTTTAAAATCAGTTAAATTATTGTAAAAACAATGAAAATTAAGAATGTTGTTTGAACTCATCAGGAGGAGCTCAACAATGGTGGCGATGCCGTTCTTTGCGCCGATGCCGTTCATGTTTTGAAGGCCAAATTTGGTAATACACAGTTCGCCGGCGGAGGATCGAAGCCGTCGCCGAAATTAATATAAATATAAATATCAATTTTGTACTTTCATTTTT

mRNA sequence

ATGCCTCTCTTTTCAAAGTTGGGATCTCGTTTGCGCCGAGCAGTGGACGCGCGACGCGTCTACCAGGAGCAGAGTTTGGAGAGAGTGACGAGTTCGAAGTCGGAATCTGCTTCTCATTGGCGGCCGGCGCTGCCGCCTATATTGGAGGATAGTAAAGGGGCTCGGTTGCCGGTGAAGAAATCCGGCGAAAAGAAGAAAACGTCCAGCCGGCAAGAGGAGCTCAACAATGGTGGCGATGCCGTTCTTTGCGCCGATGCCGTTCATGTTTTGAAGGCCAAATTTGGTAATACACAGTTCGCCGGCGGAGGATCGAAGCCGTCGCCGAAATTAATATAAATATAAATATCAATTTTGTACTTTCATTTTT

Coding sequence (CDS)

ATGCCTCTCTTTTCAAAGTTGGGATCTCGTTTGCGCCGAGCAGTGGACGCGCGACGCGTCTACCAGGAGCAGAGTTTGGAGAGAGTGACGAGTTCGAAGTCGGAATCTGCTTCTCATTGGCGGCCGGCGCTGCCGCCTATATTGGAGGATAGTAAAGGGGCTCGGTTGCCGGTGAAGAAATCCGGCGAAAAGAAGAAAACGTCCAGCCGGCAAGAGGAGCTCAACAATGGTGGCGATGCCGTTCTTTGCGCCGATGCCGTTCATGTTTTGAAGGCCAAATTTGGTAATACACAGTTCGCCGGCGGAGGATCGAAGCCGTCGCCGAAATTAATATAA

Protein sequence

MPLFSKLGSRLRRAVDARRVYQEQSLERVTSSKSESASHWRPALPPILEDSKGARLPVKKSGEKKKTSSRQEELNNGGDAVLCADAVHVLKAKFGNTQFAGGGSKPSPKLI
Homology
[Close]
BLAST of Cp4.1LG15g07610 vs. NCBI nr
Match: gi|659110752|ref|XP_008455392.1| (PREDICTED: uncharacterized protein LOC103495564 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 43/84 (51.19%), Postives = 49/84 (58.33%), Query Frame = 1 

Query: 1  MPLFSKLGSRLRRAVDARRVY----------QEQSLERVTSSKSESASHWRPALPPILED 60
          M  FSK  S  R A  A RVY           EQS+ R  SSKS+SA+HW+PAL  I+ED
Sbjct: 1  MSFFSKFSSCWRSAAVAPRVYLGDAVSEEVKAEQSVVRPRSSKSDSAAHWQPALDAIVED 60

Query: 61 SKGARLPVKKSGEK---KKTSSRQ 72
           KGA+   KKS EK   KKTS RQ
Sbjct: 61 GKGAQSRWKKSREKKPEKKTSGRQ 84

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g07610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g07610 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g07610 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g07610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110752|ref|XP_008455392.1|1.3e-0651.19PREDICTED: uncharacterized protein LOC103495564 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g07610.1Cp4.1LG15g07610.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g07610CmoCh19G009700Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g07610Cla007700Watermelon (97103) v1cpewmB264
Cp4.1LG15g07610ClCG02G001580Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g07610Lsi11G014880Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g07610MELO3C018790.2Melon (DHL92) v3.6.1cpemedB261
Cp4.1LG15g07610Bhi05G001143Wax gourdcpewgoB0326
Cp4.1LG15g07610Carg19191Silver-seed gourdcarcpeB1220
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g07610Cucumber (Chinese Long) v3cpecucB0287
Cp4.1LG15g07610Cucumber (Chinese Long) v3cpecucB0290
Cp4.1LG15g07610Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g07610Wax gourdcpewgoB0336
Cp4.1LG15g07610Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g07610Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG15g07610Cucurbita pepo (Zucchini)cpecpeB275
Cp4.1LG15g07610Cucumber (Gy14) v1cgycpeB0109
Cp4.1LG15g07610Cucumber (Gy14) v1cgycpeB0392
Cp4.1LG15g07610Cucurbita maxima (Rimu)cmacpeB115
Cp4.1LG15g07610Cucurbita maxima (Rimu)cmacpeB222
Cp4.1LG15g07610Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g07610Cucurbita maxima (Rimu)cmacpeB559
Cp4.1LG15g07610Cucurbita maxima (Rimu)cmacpeB617
Cp4.1LG15g07610Cucurbita maxima (Rimu)cmacpeB658
Cp4.1LG15g07610Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g07610Cucurbita moschata (Rifu)cmocpeB191
Cp4.1LG15g07610Cucurbita moschata (Rifu)cmocpeB387
Cp4.1LG15g07610Cucurbita moschata (Rifu)cmocpeB428
Cp4.1LG15g07610Cucurbita moschata (Rifu)cmocpeB515
Cp4.1LG15g07610Cucurbita moschata (Rifu)cmocpeB565
Cp4.1LG15g07610Cucurbita moschata (Rifu)cmocpeB609
Cp4.1LG15g07610Wild cucumber (PI 183967)cpecpiB237
Cp4.1LG15g07610Wild cucumber (PI 183967)cpecpiB235
Cp4.1LG15g07610Wild cucumber (PI 183967)cpecpiB257
Cp4.1LG15g07610Cucumber (Chinese Long) v2cpecuB233
Cp4.1LG15g07610Cucumber (Chinese Long) v2cpecuB249
Cp4.1LG15g07610Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g07610Bottle gourd (USVL1VR-Ls)cpelsiB194
Cp4.1LG15g07610Bottle gourd (USVL1VR-Ls)cpelsiB204
Cp4.1LG15g07610Watermelon (Charleston Gray)cpewcgB234
Cp4.1LG15g07610Watermelon (97103) v1cpewmB252
Cp4.1LG15g07610Watermelon (97103) v1cpewmB267
Cp4.1LG15g07610Melon (DHL92) v3.5.1cpemeB216
Cp4.1LG15g07610Melon (DHL92) v3.5.1cpemeB223
Cp4.1LG15g07610Cucumber (Gy14) v2cgybcpeB187
Cp4.1LG15g07610Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g07610Silver-seed gourdcarcpeB0041
Cp4.1LG15g07610Silver-seed gourdcarcpeB0463
Cp4.1LG15g07610Silver-seed gourdcarcpeB0914
Cp4.1LG15g07610Silver-seed gourdcarcpeB1013