Cp4.1LG15g07090 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g07090
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG15 : 7489067 .. 7491872 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATCACCTTGGTGTCACCAGGCATCAACCTGCCTTCATGGCTATCAACTTGCTTACCGGCATTACCCAAATTCAGGCCAAGTGAGAGGGAATTGAAGGCCAAGTCTCTTGAGGTTGACAAGCTATTTGAATCGGATAACAGCTTAACAACCTCCTTCTTCTCCCTCCTTACCTTATCTTTCTGCAACTGCCTGAACCTTTCTTGTAACAAAGCTATGGAGGTACCAACAATGGCGGGCTCACTACTATGCCTACTCATCTGCATAACGCTCAAAAGGGTCGATGACGACGGTCGAGTTTAAGCTGCTGCAACTGCTGGAGAATGTGTACTTATAATAGGATTAGAATGTTTTGGTCTTATCATACAGAGGAGAATCAGCTGCCTTGAAAGCAAATCCAAATAGCAAGAGTTTAATGCTGCTCTAGTGAGAGTTGGGTTGGTGAATATATTAGGGAAAAGGGGTTTTGATTGAAAGAAAATGTGTGTAACAAGTCCAAACCAATGATGGATGGTAGCGTTTGGAAGGAAGCTTGAGGAATAATAGGTTAGGTAATGGTTTGTGTCATTTAGTACAGTCGTGGCTGAAAAGAAGATGCAGCATTTGTGACAAGGAATCGCTACACAGTAAGATTTGAATTATTTCATTGATCGAATGTCTCAAGACAAGAACAATAGATTGAGTTTTGAGTCATTCCACAAGCAAGATCGATTATGTCTTGCTTGAATGATTATAAGTAATATGAACCAAGAGACATCAATCATACAATATGCTTAAATAAAGATGTGAAAAAAATATTGTTGAAATTATCAAAAAATATTTCAATTCATGCCACATTGAAGAAGAATGAAGTTCCATGTTATACAATTTAGAGTAAGTTAGACTAATAGTTTCATTTTGAGGCTATATAAAGTCATGTATGTTGTATTTGCGGAAAATATAGTAAAGAGCATTTGTGCTTTAGCCAAATTTGCAATTCTAAGTTGCATGTAGTTCGACACAATCAATCTTGCTTGTAGAGTGATTCAAATCTCAAACAAGTGTTCTTGCCTCGAGATATTTGATCAACAAGAATCATTCACGTGATTCAAATCTCAAACAAGTGTTCTTGCCTTGAGATATTCGATATTCGATCAACAAGATAATCCGAATCTTATTCCTCTTGTAGTGATTCCTTACCTTATCAATAAGCGTGCATTCTAAACTATATAGAACGGTAAAGTAACTTGGTTCTTGAAATCCTAAGTTTATTTTCCTCCGCTTATTAATACGTTAAACTCCGCTTATTCTTCCCTCACTCACTCACAAAGAGGAGGCACTAAATAAACCTTAAAACATATTACATAGACACCGTAAGTAACTCTAAATTATTCTTCCCTCAATATTTTCCATAAGTTATATTTTGTTCATGGCTTTTGAATGGGACAGGGGAAGCGAGAATCAAGGGACAAGACAAGGTTCAGGAGGAATATTTTGCATTAAAGATGACTTTAATCAGGGCCCCTCAATATAATACATGAAAGAGAAGGACAATAATACAATTAACGATGACACAATTATTAAGGAGGGAGGAGGAAGATTACCCATCAGCTAAACATGTCCTTACTGTCCCAAATCAATATCTGCTGGAAAGCTTACCTGCCAAGGGAATGATCACTTCACCCCAGAAGCCTCAAATTGCCTCATGAGTCCACTGAATGATTGCTATCAACATATTCTGCAAAAAAGTTTCAAAATATATATGGTTATCGACAGTGTGCACATCTGAGAACATTGCAGAGTTTGAAATGTGATATGAACATATACCTTTGAGAGCATTTGAGAGCATTTAAGGATGGAAATGTTAGATGAACAGACTCTACACAATGGTATGATATTTTCCACTTTGAGCATAAACCCATGATCGGGACTCACTCGCAATAGTCTTCAATCCTTAACTTGGTTGACATATCGGATCCCGTAATACCAAGGTCCATAATTATATTGGAAGATTGAAAACACTGGTTGTTCAAATAAGTAAGTGAACCACTGTCCAAACAACCTCGTCAGCCAACATAATATGTGTCTGGAAATTGAGAGTGCAATTTCTTGATTCCATGACATGAAGAAGCTTCAAACTTGGAATCAAATAAATCAAATTTTCCATTTGACTCTCGACCATAGTATGATATTGTCCACTTTGAGTCTAAAGTCTTATAGCTTTGTTTTGGACCAAAAGGCTTGATTATAAACCTATAATAATTTCCCTATCCGACACAAGAAACACTGTCCAGACAACCTCATCAGATGTCGGAACCAATCCATCAGCCAACATCTTGTGATATAGACCAATTGCAACCACAAACTGATTAGTGAAGCTCTACTGCCTCACTAGAACGACGAGCCATCACATAATGAAACTATTGGAATGGTGTATGTGTATATAGTTGCCTCAATCCGCTTCTCAACCATTTCTTCAAGCAAATTCATGGCTTCCTCTGACCTCTCTTTACTATAATGCTCAAGAATCAAAGAGGTGCCAGACTAGCATTCCTAAATGTCAAGAATCAAAACCCAAATCGATATAATGCCGAAGAATCAAAGAGGTGTATGTAAATGCATCTAGACAAGTATCATAATGAAAAATTTGACATTATCTCACTCAAAAACTGAATTACCCCCTTTTGATCATTCCTACATGGATTGATCATTAGAATTCTTACATGGTGTGCAGGCGCATAAGACGATGCCGTACTTGCCCGAACCCGAACCCGTGACGATGCCGTACATGCCGTACTCAACATCGACAAAAAGCAACACATAA

mRNA sequence

ATGGGCATCAACCTGCCTTCATGGCTATCAACTTGCTTACCGGCATTACCCAAATTCAGGCCAAGTGAGAGGGAATTGAAGGCCAAGTCTCTTGAGGTTGACAAGCTATTTGAATCGGATAACAGCTTAACAACCTCCTTCTTCTCCCTCCTTACCTTATCTTTCTGCAACTGCCTGAACCTTTCTTGTAACAAAGCTATGGAGGTACCAACAATGGCGGGCTCACTACTATGCCTACTCATCTGCATAACGCTCAAAAGGGTCGATGACGACGGTCGAGCGCATAAGACGATGCCGTACTTGCCCGAACCCGAACCCGTGACGATGCCGTACATGCCGTACTCAACATCGACAAAAAGCAACACATAA

Coding sequence (CDS)

ATGGGCATCAACCTGCCTTCATGGCTATCAACTTGCTTACCGGCATTACCCAAATTCAGGCCAAGTGAGAGGGAATTGAAGGCCAAGTCTCTTGAGGTTGACAAGCTATTTGAATCGGATAACAGCTTAACAACCTCCTTCTTCTCCCTCCTTACCTTATCTTTCTGCAACTGCCTGAACCTTTCTTGTAACAAAGCTATGGAGGTACCAACAATGGCGGGCTCACTACTATGCCTACTCATCTGCATAACGCTCAAAAGGGTCGATGACGACGGTCGAGCGCATAAGACGATGCCGTACTTGCCCGAACCCGAACCCGTGACGATGCCGTACATGCCGTACTCAACATCGACAAAAAGCAACACATAA

Protein sequence

MGINLPSWLSTCLPALPKFRPSERELKAKSLEVDKLFESDNSLTTSFFSLLTLSFCNCLNLSCNKAMEVPTMAGSLLCLLICITLKRVDDDGRAHKTMPYLPEPEPVTMPYMPYSTSTKSNT
Homology
[Close]
BLAST of Cp4.1LG15g07090 vs. TrEMBL
Match: A0A0A0K3U6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G272120 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 58/95 (61.05%), Postives = 68/95 (71.58%), Query Frame = 1 

Query: 2   GINLPSWLS--TCLPAL-PKFRPSERELKAKSLEVDK------------LFESDNSLTTS 61
           GI+L SW+S  TCLPAL  KF+P EREL++KSLEVD+            L +S++ L +S
Sbjct: 13  GIDLASWISISTCLPALFSKFKPRERELESKSLEVDEPFGSKCIIEASTLLDSNSRLRSS 72

Query: 62  FFSLLTLSFCNCLNLSCNKAMEVPTMAGSLLCLLI 82
           F SLL L FCNCLNLSCN AMEVPTM GSLLCL I
Sbjct: 73  FLSLLCLFFCNCLNLSCNSAMEVPTMVGSLLCLPI 107

[Close]
BLAST of Cp4.1LG15g07090 vs. NCBI nr
Match: gi|700189137|gb|KGN44370.1| (hypothetical protein Csa_7G272120 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.6e-18
Identity = 58/95 (61.05%), Postives = 68/95 (71.58%), Query Frame = 1 

Query: 2   GINLPSWLS--TCLPAL-PKFRPSERELKAKSLEVDK------------LFESDNSLTTS 61
           GI+L SW+S  TCLPAL  KF+P EREL++KSLEVD+            L +S++ L +S
Sbjct: 13  GIDLASWISISTCLPALFSKFKPRERELESKSLEVDEPFGSKCIIEASTLLDSNSRLRSS 72

Query: 62  FFSLLTLSFCNCLNLSCNKAMEVPTMAGSLLCLLI 82
           F SLL L FCNCLNLSCN AMEVPTM GSLLCL I
Sbjct: 73  FLSLLCLFFCNCLNLSCNSAMEVPTMVGSLLCLPI 107

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g07090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g07090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3U6_CUCSA2.5e-1861.05Uncharacterized protein OS=Cucumis sativus GN=Csa_7G272120 PE=4 SV=1[more]
BLAST of Cp4.1LG15g07090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g07090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189137|gb|KGN44370.1|3.6e-1861.05hypothetical protein Csa_7G272120 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g07090.1Cp4.1LG15g07090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g07090Cucumber (Gy14) v2cgybcpeB751
Cp4.1LG15g07090Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g07090Melon (DHL92) v3.6.1cpemedB261
Cp4.1LG15g07090Silver-seed gourdcarcpeB0281
Cp4.1LG15g07090Silver-seed gourdcarcpeB0484
Cp4.1LG15g07090Silver-seed gourdcarcpeB1481
Cp4.1LG15g07090Cucumber (Chinese Long) v3cpecucB0316
Cp4.1LG15g07090Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g07090Wax gourdcpewgoB0326
Cp4.1LG15g07090Wax gourdcpewgoB0336
Cp4.1LG15g07090Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g07090Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG15g07090Cucumber (Gy14) v1cgycpeB0206
Cp4.1LG15g07090Cucumber (Gy14) v1cgycpeB0287
Cp4.1LG15g07090Cucurbita maxima (Rimu)cmacpeB118
Cp4.1LG15g07090Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g07090Cucurbita maxima (Rimu)cmacpeB560
Cp4.1LG15g07090Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g07090Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g07090Wild cucumber (PI 183967)cpecpiB251
Cp4.1LG15g07090Wild cucumber (PI 183967)cpecpiB257
Cp4.1LG15g07090Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g07090Bottle gourd (USVL1VR-Ls)cpelsiB194
Cp4.1LG15g07090Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g07090Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g07090Watermelon (97103) v1cpewmB268
Cp4.1LG15g07090Melon (DHL92) v3.5.1cpemeB223