Cp4.1LG15g06310 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g06310
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPectinesterase
LocationCp4.1LG15 : 6975395 .. 6977320 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGTTCATTACTTTGATTGGCGATAATGAATTTACGATCATTATCGTCCACAATAGAAGTAATGTCGATAGATTCAGAACCTCTAAATCTGCAACCACGGGTAATTACTCTTATTCTATATTCTTATTCTATATTTTTATGAAATAATTTATTTGAGCAAAATAAATTTGTTAATATTTAACTAAGGAACTTGAACTCACGTGACAATTATTTTCTCCTTTTCAATTAGTCTTTCTGTAGCACAATTTATAATATTGTTTAAATCCTTACTAATTTCTTCATTTTTATTTCTTGGTAAAGAGGACAAGGGTGCGAACCGCAGGACATCAAAACGGCGAAGCAGTTGCTGTCCTCGACCGTACATACTTCACTACCTATTACAAGTGTAGATTTTTTAGTTTCTAAGACACCTTAAATACAAAGAGCTGGTTCCAATTTTTTAAGGAGTGCAACATCTATAGAACCCGTGGACTTCATTTTTGGAGATAGACTGGCTATGTTCCAAGATTGTAACATATATGCTCGGTTACCGAGCAATGAAACTACAGTCACCGCGCAGTCCAACAAAGAACCACGGTTGAAAAGCGGCTTCTCCTTTCAGAATTGTACCGTCACAATTTCTCCGGAGATAGCTTCCAGTAAGGCTTTAGTTAAAATCTATCTTGGTCGGCCATGGAAACAATATTCAACCATTGTGTTCATGGAGTCAATTTTGGATCACAACGTGGTTGTACATGGATTGATATTGTGGTCAAGGGTCCCAATAAACAACCTCTTTTATGCGGAATTCAATAATAGAGGTCCTGGTGCTGATACAGCTCACCGAGTTAATTGGCCAGGTTTTCATGTAATCAATTTCAATACCTTTCCACCACCCTCTGTACCTACTAAAGTTCGAACGTGAGCACATAGAGTTGTTCTTGTTCTTGCAATCAGTTCATCCTCTTGGCCGGCAAAGCTACCACACCGTTTTGGTGGTAATTGCTCGTGTGTATCAAGGTGATCACTGGCTTGTTTTTGTCTCACCGGAGTTTATATCTGATGAAGTAAACCGTTCGTATTCCGTCGCTTCTTAATGTCCGACGTCATTCTATCTCTTCTTCTTTACTCTCTCATTTATTTTAATTGTAAATAGAAGACTTATGAGCATGACCTCGAATTTTTTTTCATACCACTAATTTCTCAAACACTAAAGATTGAAGTTATAAAAAATTCAAAGAGATTGTCACAGTGTAATTATTGGACGTGGTTTCAAAAGGTCACTTTTGTAATTTCTCTTCTATACACCAAACGGTAAAATTAAAATGAGTAATAGTACTTATCAAATCATTATAAACCATTCTATATATGAATGTGATTAGAGTAAAATCAAAATTGAGAATTAGGAGTAACAAAGATGAACTTTTTGAACTTCTACCTATTTAGAGTGCGAGAGAATAATATGAATTTTGAATATTATGTATTATGCAGCTTGTTAATAATGATCTGTCCTCATCACTCCTCTGCAGTTCATTAATGAACTGCTGTATTTGGAATATTATGTTGTGTTTTTATGGCAAAATCTTTCCCTTTTTAATTGTGATCTTGTGCATTCAAATAAACTTACTCCATTTTTAAATTAAAAAAACTTTGAAGAACTCATGCTAATTCCCTCTATAAAATCACCACCATCAAGCTCTGAAAACCACATCCTCTTGCTTGTTCTTTTAGTTTACACAGTTCTTGTTTGTTCTCTCAATTTGCTTGCTCTTATATTTTGCTTTTCAATTTTAAAGATGGCATTTTTCAGCTTGTTGCATCTTTCTTGTATTTGTTGATTTCATCCATTTTAATGCAATAGTAGCATTAGATGGATCGGGAGACTACAAAAGCATTAATGATGCAATAGCAGCCGCTCCAGAGACGAATGTTCACGGTAAATGT

mRNA sequence

AAGAAGTTCATTACTTTGATTGGCGATAATGAATTTACGATCATTATCGTCCACAATAGAAGTAATGTCGATAGATTCAGAACCTCTAAATCTGCAACCACGGAGGACAAGGGTGCGAACCGCAGGACATCAAAACGGCGAAGCAGTTGCTGTCCTCGACCGTACATACTTCACTACCTATTACAAGTGAGTGCAACATCTATAGAACCCGTGGACTTCATTTTTGGAGATAGACTGGCTATGTTCCAAGATTGTAACATATATGCTCGGTTACCGAGCAATGAAACTACAGTCACCGCGCAGTCCAACAAAGAACCACGATGGCATTTTTCAGCTTGTTGCATCTTTCTTGTATTTGTTGATTTCATCCATTTTAATGCAATAGTAGCATTAGATGGATCGGGAGACTACAAAAGCATTAATGATGCAATAGCAGCCGCTCCAGAGACGAATGTTCACGGTAAATGT

Coding sequence (CDS)

AAGAAGTTCATTACTTTGATTGGCGATAATGAATTTACGATCATTATCGTCCACAATAGAAGTAATGTCGATAGATTCAGAACCTCTAAATCTGCAACCACGGAGGACAAGGGTGCGAACCGCAGGACATCAAAACGGCGAAGCAGTTGCTGTCCTCGACCGTACATACTTCACTACCTATTACAAGTGAGTGCAACATCTATAGAACCCGTGGACTTCATTTTTGGAGATAGACTGGCTATGTTCCAAGATTGTAACATATATGCTCGGTTACCGAGCAATGAAACTACAGTCACCGCGCAGTCCAACAAAGAACCACGATGGCATTTTTCAGCTTGTTGCATCTTTCTTGTATTTGTTGATTTCATCCATTTTAATGCAATAGTAGCATTAGATGGATCGGGAGACTACAAAAGCATTAATGATGCAATAGCAGCCGCTCCAGAGACGAATGTTCACGGTAAATGT

Protein sequence

KKFITLIGDNEFTIIIVHNRSNVDRFRTSKSATTEDKGANRRTSKRRSSCCPRPYILHYLLQVSATSIEPVDFIFGDRLAMFQDCNIYARLPSNETTVTAQSNKEPRWHFSACCIFLVFVDFIHFNAIVALDGSGDYKSINDAIAAAPETNVHGKC
Homology
[Close]
BLAST of Cp4.1LG15g06310 vs. Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.9e-06
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1 

Query: 71  VDFIFGDRLAMFQDCNIYARLP--SNETTVTAQSNKEP 107
           VDFIFGD  A+ Q+CNIYAR P    + T+TAQS KEP
Sbjct: 400 VDFIFGDATAILQNCNIYARKPMSGQKNTITAQSRKEP 437

[Close]
BLAST of Cp4.1LG15g06310 vs. TrEMBL
Match: A0A0A0LR14_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_1G049450 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.7e-08
Identity = 48/132 (36.36%), Postives = 57/132 (43.18%), Query Frame = 1 

Query: 1   KKFITLIGDNEFTIIIVHNRSNVDRFRTSKSATTEDKGANRRTSKRRSSCCPRP------ 60
           KKFI L+GD+ FT II+ NRSN   F+T+ SAT   +G N             P      
Sbjct: 75  KKFIALVGDDPFTTIIIDNRSNGTGFKTNNSATLTVQGDNFMAESLTFENSAGPQNNQAV 134

Query: 61  -----------YILHYLLQVSATSIE-------------PVDFIFGDRLAMFQDCNIYAR 103
                      Y   +L       +               VDFI G    MFQDCNIYAR
Sbjct: 135 AVFDKANHTAYYKCRFLSFQDTLYVNGKPQFFKESDIYGSVDFICGYGQVMFQDCNIYAR 194

[Close]
BLAST of Cp4.1LG15g06310 vs. TAIR10
Match: AT1G23200.1 (AT1G23200.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 52.0 bits (123), Expect = 3.9e-07
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1 

Query: 71  VDFIFGDRLAMFQDCNIYARLP--SNETTVTAQSNKEP 107
           VDFIFGD  A+ Q+CNIYAR P    + T+TAQS KEP
Sbjct: 400 VDFIFGDATAILQNCNIYARKPMSGQKNTITAQSRKEP 437

[Close]
BLAST of Cp4.1LG15g06310 vs. NCBI nr
Match: gi|659068777|ref|XP_008446175.1| (PREDICTED: pectinesterase 2-like [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 54/136 (39.71%), Postives = 66/136 (48.53%), Query Frame = 1 

Query: 1   KKFITLIGDNEFTIIIVHNRSNVDRFRTSKSATTEDKGAN--RRTSKRRSSCCPR----- 60
           K FI LIGDN  T IIV +RSN   F+TS SAT    G N   ++    +S  P+     
Sbjct: 38  KTFIALIGDNALTTIIVDDRSNARGFKTSDSATLTVNGNNFLAKSLTFENSAGPQNGQAV 97

Query: 61  -----PYILHY----------LLQVSATSI-------EPVDFIFGDRLAMFQDCNIYARL 108
                 +   Y           L V  T           VDFIFG+ L MFQDCNIYAR 
Sbjct: 98  AVLDQAHFTAYHKCKFLGFQDTLYVKGTQFFKECEIYGSVDFIFGNGLVMFQDCNIYARE 157

[Close]
BLAST of Cp4.1LG15g06310 vs. NCBI nr
Match: gi|659131264|ref|XP_008465596.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 47, partial [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-10
Identity = 54/132 (40.91%), Postives = 67/132 (50.76%), Query Frame = 1 

Query: 1   KKFITLIGDNEFTIIIVHNRSNVDRFRTSKSATTEDKGAN--RRTSKRRSSCCPRP---- 60
           KKFI LIGD+ FT II+ NRSN   F+T+ SAT   +G N   ++    +S  P+     
Sbjct: 14  KKFIALIGDDAFTTIIIDNRSNGTGFKTNNSATLTVQGNNFMAKSLTFENSAGPQNGQAV 73

Query: 61  -----------YILHYL-----LQVS--------ATSIEPVDFIFGDRLAMFQDCNIYAR 103
                      Y   +L     L V+        +     VDFIFG    MFQDCNIYAR
Sbjct: 74  AVFDKADHTAYYKCRFLGFQDTLYVNGKYQFFKESNIYGSVDFIFGHGRVMFQDCNIYAR 133

[Close]
BLAST of Cp4.1LG15g06310 vs. NCBI nr
Match: gi|778708428|ref|XP_011656190.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 41 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 5.1e-09
Identity = 54/149 (36.24%), Postives = 67/149 (44.97%), Query Frame = 1 

Query: 1   KKFITLIGDNEFTIIIVHNRSNVDRFRTSKSATTEDKGAN--RRTSKRRSSCCPR----- 60
           K FI LIGDN  T IIV +RSN   F+T  SAT    G N   ++   ++S  P+     
Sbjct: 48  KTFIALIGDNALTTIIVDDRSNARGFKTIDSATLTVNGNNFLAQSLTFKNSAGPQNGQAV 107

Query: 61  ------PYILHYLLQV-----------------SATSIEPVDFIFGDRLAMFQDCNIYAR 116
                  +  +Y  +                         VDFIFGD L MFQDCNIYAR
Sbjct: 108 AVLDEAHFTTYYKCRFLGFQDTLYVRGKPQFFKECDIYGSVDFIFGDGLVMFQDCNIYAR 167

[Close]
BLAST of Cp4.1LG15g06310 vs. NCBI nr
Match: gi|659068775|ref|XP_008446163.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 6.7e-09
Identity = 54/149 (36.24%), Postives = 67/149 (44.97%), Query Frame = 1 

Query: 1   KKFITLIGDNEFTIIIVHNRSNVDRFRTSKSATTEDKGAN---RRTSKRRSSCCPRPYIL 60
           K FI LIGDN  T IIV +RSN   F+TS SAT    G N   +  +   S+       +
Sbjct: 48  KTFIALIGDNALTTIIVDDRSNARGFKTSDSATLTVNGDNFIAKSLTFENSAGPQNGQAV 107

Query: 61  HYLLQVSATSIE---------------------------PVDFIFGDRLAMFQDCNIYAR 116
             L Q   T+                              VDFIFG+ L MFQDCNIYAR
Sbjct: 108 AVLDQARFTAYHKCRFLGFQDTLYVGGKSHFFKECDVYGTVDFIFGNGLTMFQDCNIYAR 167

[Close]
BLAST of Cp4.1LG15g06310 vs. NCBI nr
Match: gi|778657958|ref|XP_004152582.2| (PREDICTED: pectinesterase 2-like [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 9.6e-08
Identity = 48/132 (36.36%), Postives = 57/132 (43.18%), Query Frame = 1 

Query: 1   KKFITLIGDNEFTIIIVHNRSNVDRFRTSKSATTEDKGANRRTSKRRSSCCPRP------ 60
           KKFI L+GD+ FT II+ NRSN   F+T+ SAT   +G N             P      
Sbjct: 75  KKFIALVGDDPFTTIIIDNRSNGTGFKTNNSATLTVQGDNFMAESLTFENSAGPQNNQAV 134

Query: 61  -----------YILHYLLQVSATSIE-------------PVDFIFGDRLAMFQDCNIYAR 103
                      Y   +L       +               VDFI G    MFQDCNIYAR
Sbjct: 135 AVFDKANHTAYYKCRFLSFQDTLYVNGKPQFFKESDIYGSVDFICGYGQVMFQDCNIYAR 194

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g06310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PME6_ARATH6.9e-0663.16Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PM... [more]
BLAST of Cp4.1LG15g06310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR14_CUCSA6.7e-0836.36Pectinesterase OS=Cucumis sativus GN=Csa_1G049450 PE=4 SV=1[more]
BLAST of Cp4.1LG15g06310 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G23200.13.9e-0763.16 Plant invertase/pectin methylesterase inhibitor superfamily[more]
BLAST of Cp4.1LG15g06310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068777|ref|XP_008446175.1|3.5e-1039.71PREDICTED: pectinesterase 2-like [Cucumis melo][more]
gi|659131264|ref|XP_008465596.1|6.0e-1040.91PREDICTED: probable pectinesterase/pectinesterase inhibitor 47, partial [Cucumis... [more]
gi|778708428|ref|XP_011656190.1|5.1e-0936.24PREDICTED: probable pectinesterase/pectinesterase inhibitor 41 [Cucumis sativus][more]
gi|659068775|ref|XP_008446163.1|6.7e-0936.24PREDICTED: probable pectinesterase/pectinesterase inhibitor 39 [Cucumis melo][more]
gi|778657958|ref|XP_004152582.2|9.6e-0836.36PREDICTED: pectinesterase 2-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
IPR000070Pectinesterase_cat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042545 cell wall modification
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0005618 cell wall
molecular_function GO:0030599 pectinesterase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g06310.1Cp4.1LG15g06310.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 70..107
score: 7.
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 2..106
score: 8.4
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 71..109
score: 8.2E-7coord: 125..151
score: 3.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g06310Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g06310Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g06310Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g06310Watermelon (Charleston Gray)cpewcgB235
Cp4.1LG15g06310Watermelon (97103) v1cpewmB268
Cp4.1LG15g06310Melon (DHL92) v3.5.1cpemeB224
Cp4.1LG15g06310Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g06310Melon (DHL92) v3.6.1cpemedB262
Cp4.1LG15g06310Silver-seed gourdcarcpeB0484
Cp4.1LG15g06310Silver-seed gourdcarcpeB1189
Cp4.1LG15g06310Silver-seed gourdcarcpeB1459
Cp4.1LG15g06310Cucumber (Chinese Long) v3cpecucB0310
Cp4.1LG15g06310Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g06310Wax gourdcpewgoB0326
Cp4.1LG15g06310Cucurbita pepo (Zucchini)cpecpeB280
Cp4.1LG15g06310Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g06310Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG15g06310Cucumber (Gy14) v1cgycpeB0206
Cp4.1LG15g06310Cucurbita maxima (Rimu)cmacpeB118
Cp4.1LG15g06310Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g06310Cucurbita maxima (Rimu)cmacpeB560
Cp4.1LG15g06310Cucurbita maxima (Rimu)cmacpeB613
Cp4.1LG15g06310Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g06310Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g06310Cucurbita moschata (Rifu)cmocpeB513
Cp4.1LG15g06310Cucurbita moschata (Rifu)cmocpeB562
Cp4.1LG15g06310Wild cucumber (PI 183967)cpecpiB259