Cp4.1LG15g05450 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g05450
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor RADIALIS
LocationCp4.1LG15 : 6300543 .. 6306179 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACTACACAAAAAGATTTCCCTTTACCCCCCAACTTGGTTCATGACCCTTTGGCTTCCTCTTATAAAGAGCACCAAATGTGTAGCTCTTTGGCACAAATCCATTCATCTTTTCCTTGCAAAATTTGAATTCTTTTTCAAACCCATTAAAGCTTTCCCATTTTTGTGTTGTTTTTTTAGCCAAATCTCCTCAAACTTAGCACTATCATCAATGGCTTCAATGTCGGCTCATGGGTCGGGTGTATGGACTGCAAAGCAAAACAAGGCGTTTGAGGAGGCTTTGGCAATGTATGATCAAGACAGGCCTGATCGATGGCTGAATGTTGCTAAGGCCATTGGTGGAAAAACTGAAGAGGAAGTGAAAAGGCATTACCAAGTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGCAAGGTTCCTTTTCCTTATCGAAGCTCAAGAGGCAGTTAATGCTACTCATTGATGATGATTAAGGTAATAGCTCCCAATTTAGTGCCACTAATTGATGATCAAGCAAGAAAATTGGATCCACCCACCTTTCAACTTATTTGAGTTAGAAATGAATTCAGATAAATAAAAATTTTATGGGTTAAGTTGATTTATGGGTTCTCGTAAAACTAGGTTAAGTTGAACGGAATTGAACGAACTCAAATATTTTTAAATATTTTTATTATTTATTCTTCGATAACTCTTAAGAACGATTTTTAAACTATCTAGAAGGTAATTTTTCAAAATATATATTCAATTTGAGGGGTAAATCTGACTTAAATAGATATTTTATGGGCTAATATTTTACTTTTATTAAAAATAAAAAAATTAAATAAATGACCTAAACAAACGTGAACCAATGGGACCCAAAAAGTTTATGGTTGGGTTGGGTTCATTATTTAATAAGAGTTATTTGGTTGAAAAAAATGACAACTCCAACATTACGTCTAAAAAATGTCACAACCCAATCAAACCAAATGCAAAATGATCTATGAATGAACGGTGAGTTTTTCTGATTGAGAAAAAACTTGAAAATTTTGACTTCTTATATAGCATTTAAACGTATGATGAATCGAGATGGGACAGTTGTCTAATGTCCTTGTTAAAATATTGATATAATTTCATTTACGATGACCCGAAAGCTCGAGTTTATTTTTCTAAGCTGATGGCTACATGTTTCAAGAAGAACACCAAACTCAGCCATTAGTTCTTGAGTTTACACAATATTTATTGTTCCTTTGAATTTTGCAGGATGAGAAACATGAAGTTCCATTGAGCAAGCTCGTGCAGTGCTGGAAGAATAACAAGAAGAAAGCCATTTTCTTGCTGATCAATCCATTTTTCTTTCTTTTTTTTTTCTTTTTTCTCTAGAATTTTCATGAAAAAATTTGAAGCTCTCTGTCGTTGTATCCCTTAAAATGTAGTTGTAATACTCGAATGAATATGATTTCTTGGTGTTAGTACCACTCATCAACAGTTTTGTCTGGCCTTTATGAGTTTATTATTCAATCAAACCACCAATATTATGATTTTTGAGATTGAGGGTTTTGTGTTTAGTTTACAACATGGACAAAACTTAAAACACTTTGAATATTTGAACATTTAGAATATTTAGATTTACAATGGTTGAGTAGCTTGAATCCCTTTGATTGGAGAGGAGAATGAAACATTTTTTTACAAGGATGTGAAAATCTCTCTTTGGTAGATGCGTTTTAAAAATCATAAGGCTGATGACTATATGTAACAGGCCAAAACGGACAATATCTACTATAGCGGTGGGCTTGAGCTGTTACAAATGGTATTAGAGCCAAACACCACTGGGCAGTTTGTCAATGAGGACGCTGGCCCCCAACAGGGTAGATTGTGAGATCCCATATCGGTTGGAGAGGGAAACGAAACATTCTTTACAAGCGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAACTGTGAGACTGATAACAATACGTAATAGGCCAAAATGGACTAACGGTGGTGGGATACCAAAAGAGATGAAGATTAAGAACCAGAGTTGAGTTGTGCCAAAAGTAGCCTATAACCACATTCAAATATTGAAGTTGAGTTCTATTGCTTGTTCTAGAAGTGACCAAGAATTTGAAAAATTGATTAAAAGCGAAGATATGCTCAAGACTTCATGCTTTTAACTTAATGACTACAAAATTGTAAGTTGTCACGAAGATATATTGTCATAACTCTCATTTAAGTTCATAATTCTTTTCGTTCATATCCTCATGTATTTGATTCATGTATGAAAATTAGTATGGTTATGTTTATATAAAAGCTTGTCTCTCATTATTTTGAGACGTAGAGTCATTGTCATTTTGTATTTGCCTAGAGGCAATTGGGAGGAACTTTGTTGAGAGACTTTAAGTACAAGAGTATGAGAGATACACTTGTAAACCCTTTGGTTATAGTGATTGGCTATCATCCGTGGATGTAGGGAAATTTCTATCTCCGAACCATGTAAATATTTGTGTCTCTTTGTTTAATTTCTGTTTCTGGGTGTGTGAGTATGATCGATCTTTTTTCTGCTTCCGCTACAATAAATGGTATAAGAGCATTGAAAATTGTAACACAATGGCATAACACTAGCTACTCAATTCAATTAGCGATTTTGAATTAGGAGATGACTTTCAGTGGTGACCCAGCGGTGACCCACACTTTAAACAACATTAGTTCCGATTAACCATAACCCGTAGAGTTCATAATATACAATTTCAAACGTGTTTGAACATGAACCAACGAGGGTTTCAGTAAGAACAAGTAGGCAACGATCTATTTAAACTTCTATCGGATGGAAGAAAAGTGTTTTAGAGTCTTTTATAACCTTTAGATCTTTGTGTTTTTAGCTTTAGACAAGTTTTAGATGGATCGAACATGAATTAAGAACGACATTGGAATAAACACTAGCTAGTAACACTAAATTATGATTTGGATTGATTAATAACCTTTAAACTAAGCTTTAGGATCATTTTTAATAAGGTTATTAAAAAAGATTTCTCTCGTTCTTAGTGAAATATGAACACATTATCATCCAACTTGAACTAAATATTCAAGGTCCATACTTGTAATGAATATAGTTCCTACAAGAAATGAAAGATTCGAAGATATAATTATTGCTTTCAATTGGAAGGAAGAATTGGGGATGATAAAGATTCTAAGCATTGGTTGGAGGGTATGTCTAAGTCCTTAGCCATCAATTTCATTTTGAGGAGATTCCTTGCAAGAGTTTATTTCATGTAGTTTTCAACTAATATTGGTCATAGCTCAAGCTATAACTCTAATATCGACTCCTAAATTCATCTCTAACGAATCTCACGTTACTTCAACATGTTGTAAGTTGTCATCTTATTCTTTAATAGCTTTCTTCTTCTTCGAACACATTCATTTTGATAAAGATCTTGTCAAGTCGTGTGGAAAAATGAAAAACGTTCTTGTAAAAACTTCATCGAACCCAAAAACTGACAATTTAATCTGAGAGGGAAATGACATTAGACTTGATGTTGTACTACCCGAGTAAATAACAATGAACCCACAGATTTAATCTGATGAGATATAAAAATGTGAGATCCCATATTAGTTGGAGAAGGGAACGAAACATTCCTTATAGATGTGAAAACCTCTTCCTAGCATATGCGTTTTAAAATCGTGAGGCTGACGGCGATACATAACGTGCCAAAGCGGACAATATTTGCTATCGGTGGGCTTGGACGGTTACAAATGGTATCAAAGTCAAACACCACGCGGTGTGCCAGCGAGATGTTGACCCCCGCGGGGGGTGGATTGTGAGATCCCACATAGGTTGGAGGGCGAACCAAACATTTAAGAGTGTGGAAACCTCTCCCCAACAAACGTGTTGTAAAATCGTGAGGCTAACAATGATACGTAACGGGACAAAACAGAAGTGGAAGCAAGATCGATCGCTCTCACACACCCACAAACATAAATTAAACAAAAAGACAAAGATCTACGTGATTCGAAGAGAAAAAATTCTCCTATATACACGAATGGTACAAAGGACTATTCCCCATATGCTTTGGGACTGTCCTAGCTAGCTCACAAGTTGCAACTAGCCGTAAAATAATGGCAGGACAACCATAGCTTTTATGATCCTTATGCCTTTGTTTCCCCAAGCTACGCCTATTATATTCCAATAGATATTTAGAGTAGCCTATTGCTCATAAAGTTGGGTCCTTTTCTTTTCTAGGTTGAAAATATATTGTGAATGTGATCAAATACTAAAGTTTTCAAGAATAAACAATAAATTCTTTTCAAATTGAATAAAATATATATTTCATTTCAATTTTTAAAATTTATAGATCAATATCTAGTTGTAGTAGTCTTGAGCGGTACAATGGTATCAGAACGAAACAAGAGGCGGTGTGTCTACAAAATTTTCGTTTCTTAGAAAGAAGGAGAAACAAAAACTCTACAAGAGATTCCAATTCTCTCACCATCTCCAATTGTTGTGTGTCTTTTGTTCTAACAACATTTTGTGGTTTCTAAGGACACAAATCATTAAAATTCCTTTTGTAATGTCAAAAGATACCCTCAGCCTTTCCAGCATATACATAAAGAGTACCCACAGCCTTGTGTTTGGTACCCATCATAAGAGTTTAGAGGCCTCTTTGATTCTAACCCCTTAATTATGGCTTCAATGTCTGCTCATGGGTCAGCTGGTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGAAGGCTTTGGCTGTGTATGATCAAGACACACCTGAGCGATGGCTCAATGTTGCTAAGGCCATTGGTGGGAAAACCGAAGAGGAAGTGAAGAGGCACTACCAACTTCTTTTGAAGGATGTTAAGCAAATTGAGTCCGGTGAAGTTCCTTTCCCATATGGAAGGTCCAGATGATTGAGAAGAGGTAATATGTATAGATTTTATTCAAAATTTAACGCGAGTTTGAAACGTTTGAAATGTCATTACGAACACGATGATGTTTCCTTTGAATTTCACTCTTTTTCGATTCTCGATCACTAAAACATTTTAGGATTTCTAAGATTAAGATACTAGCCCTATGTAGTTTAGCGGGATCGAGAGTAAAAACCCAAGTGAGATGACAATTAATGGAGAATAATCGTGAGGATAATTCTCACTTGTTTATAGTCGAAGTTCTTTAATTGAGATGAAAAAAATGTGAGATCCCACCTTGGTTGGAGGGGAAACGAATCATTCCTTATAAGAGTGTAGAAATTTATTTCCAGTAGACGAGTTTTAAAATTATGAGGGTGATGGTGATACGCAACGAGCTAAAATGGACAATATTTGTTAGCGGTGGGCTTGAGCTGTTACAAATGGTATCTGAGCCAGTCACAGGAAGAGCGTTTTTAAAGAGATTTTCTTCGGTGTTCTTGGGAAGAGAGAGCTCGAGACTTGTTTAAACATTCATCAAGTTTGATTTTTAACAAAATATTTCTCTTTTTCCTATGTTTTTCTTAGGATGGAGAAACATGAAGTTGGATAGAGGCAGCTCGTGGAGTGCTTGAAGAACAAAAGAAGAACGAACAATTTTGCTTGCTTTTTTGTGCCTTCGTAATTCTAATTGTACTTTTTCAATGGAATAAAAGGTTATTGCTTGCTCTTTTTTTCGAGGCAC

mRNA sequence

CAACTACACAAAAAGATTTCCCTTTACCCCCCAACTTGGTTCATGACCCTTTGGCTTCCTCTTATAAAGAGCACCAAATGTGTAGCTCTTTGGCACAAATCCATTCATCTTTTCCTTGCAAAATTTGAATTCTTTTTCAAACCCATTAAAGCTTTCCCATTTTTGTGTTGTTTTTTTAGCCAAATCTCCTCAAACTTAGCACTATCATCAATGGCTTCAATGTCGGCTCATGGGTCGGGTGTATGGACTGCAAAGCAAAACAAGGCGTTTGAGGAGGCTTTGGCAATGTATGATCAAGACAGGCCTGATCGATGGCTGAATGTTGCTAAGGCCATTGGTGGAAAAACTGAAGAGGAAGTGAAAAGGCATTACCAAGTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGCAAGGTTCCTTTTCCTTATCGAAGCTCAAGAGGCAGTTAATGCTACTCATTGATGATGATTAAGGATGAGAAACATGAAGTTCCATTGAGCAAGCTCGTGCAAATTTTCATGAAAAAATTTGAAGCTCTCTGTCGAAGAATTGGGGATGATAAAGATTCTAAGCATTGGTTGGAGGGTATGTCTAAGTCCTTAGCCATCAATTTCATTTTGAGGAGATTCCTTGCAAGAGTTTATTTCATAGGCCTCTTTGATTCTAACCCCTTAATTATGGCTTCAATGTCTGCTCATGGGTCAGCTGGTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGAAGGCTTTGGCTGTGTATGATCAAGACACACCTGAGCGATGGCTCAATGTTGCTAAGGCCATTGGTGGGAAAACCGAAGAGGAAGTGAAGAGGCACTACCAACTTCTTTTGAAGGATGTTAAGCAAATTGAGTCCGGTGAAGTTCCTTTCCCATATGGAAGGATGGAGAAACATGAAGTTGGATAGAGGCAGCTCGTGGAGTGCTTGAAGAACAAAAGAAGAACGAACAATTTTGCTTGCTTTTTTGTGCCTTCGTAATTCTAATTGTACTTTTTCAATGGAATAAAAGGTTATTGCTTGCTCTTTTTTTCGAGGCAC

Coding sequence (CDS)

ATGATGATTAAGGATGAGAAACATGAAGTTCCATTGAGCAAGCTCGTGCAAATTTTCATGAAAAAATTTGAAGCTCTCTGTCGAAGAATTGGGGATGATAAAGATTCTAAGCATTGGTTGGAGGGTATGTCTAAGTCCTTAGCCATCAATTTCATTTTGAGGAGATTCCTTGCAAGAGTTTATTTCATAGGCCTCTTTGATTCTAACCCCTTAATTATGGCTTCAATGTCTGCTCATGGGTCAGCTGGTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGAAGGCTTTGGCTGTGTATGATCAAGACACACCTGAGCGATGGCTCAATGTTGCTAAGGCCATTGGTGGGAAAACCGAAGAGGAAGTGAAGAGGCACTACCAACTTCTTTTGAAGGATGTTAAGCAAATTGAGTCCGGTGAAGTTCCTTTCCCATATGGAAGGATGGAGAAACATGAAGTTGGATAG

Protein sequence

MMIKDEKHEVPLSKLVQIFMKKFEALCRRIGDDKDSKHWLEGMSKSLAINFILRRFLARVYFIGLFDSNPLIMASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRMEKHEVG
Homology
[Close]
BLAST of Cp4.1LG15g05450 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.3e-24
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 1 

Query: 74  ASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKD 133
           +SMS+  S+GSWTAKQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LL++D
Sbjct: 4   SSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 134 VKQIESGEVPFP 146
           +  IE+G VPFP
Sbjct: 64  INSIENGHVPFP 74

[Close]
BLAST of Cp4.1LG15g05450 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-23
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 1 

Query: 75  SMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDV 134
           SMS++GS GSWT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LL++D+
Sbjct: 5   SMSSYGS-GSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 135 KQIESGEVPFP 146
           + IE+G VPFP
Sbjct: 65  ESIENGHVPFP 74

[Close]
BLAST of Cp4.1LG15g05450 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.2e-22
Identity = 45/69 (65.22%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 77  SAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQ 136
           S  GS   W+AK+NKAFE+ALAVYD+DTP+RW NVA+A+ G+T EEVK+HY++L++D+K 
Sbjct: 3   STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 137 IESGEVPFP 146
           IESG+VPFP
Sbjct: 63  IESGKVPFP 71

[Close]
BLAST of Cp4.1LG15g05450 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-20
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MAS S   SA SWT K+NK FE+ALA YDQDTP+RW NVA+A+GGK+ EEV+RHY+LL++
Sbjct: 1   MASNSMSSSA-SWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIR 60

Query: 133 DVKQIESGEVPFP 146
           DV  IESG  P P
Sbjct: 61  DVNDIESGRYPHP 72

[Close]
BLAST of Cp4.1LG15g05450 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-19
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MAS S   S   WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +L++
Sbjct: 1   MASNS-RSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 133 DVKQIESGEVPFP 146
           D+  IE+G VP P
Sbjct: 61  DLINIETGRVPLP 72

[Close]
BLAST of Cp4.1LG15g05450 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-28
Identity = 64/74 (86.49%), Postives = 71/74 (95.95%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MAS+SAHGS G WTAKQNKAFE+ALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1   MASLSAHGS-GVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 133 DVKQIESGEVPFPY 147
           DVK IESG+VPFPY
Sbjct: 61  DVKHIESGKVPFPY 73

[Close]
BLAST of Cp4.1LG15g05450 vs. TrEMBL
Match: A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.2e-27
Identity = 62/74 (83.78%), Postives = 70/74 (94.59%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MASMSAHGS+ +WTA +NKAFEKALA+YD+DTPERWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1   MASMSAHGSS-AWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 133 DVKQIESGEVPFPY 147
           DV  IESG++PFPY
Sbjct: 61  DVNHIESGQIPFPY 73

[Close]
BLAST of Cp4.1LG15g05450 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MASMS+HGS G+WT  QNKAFEKALAVYDQDTP+RWLNVAKA+GGKT EEVKRHY LL++
Sbjct: 1   MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 133 DVKQIESGEVPFPY 147
           DVK IESG+VPFPY
Sbjct: 61  DVKFIESGQVPFPY 73

[Close]
BLAST of Cp4.1LG15g05450 vs. TrEMBL
Match: W9QGR5_9ROSA (DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_018551 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-24
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = 1 

Query: 78  AHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQI 137
           A  S  +WTAKQNKAFEKALAVYD+DTP+RW NVAKA+GGKT EEVKRHY+LLL+DVK I
Sbjct: 2   ASSSMSTWTAKQNKAFEKALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLLEDVKHI 61

Query: 138 ESGEVPFPYGR 149
           ESG+VPFPY R
Sbjct: 62  ESGQVPFPYYR 72

[Close]
BLAST of Cp4.1LG15g05450 vs. TrEMBL
Match: A0A0D2RSV3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G244000 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-24
Identity = 58/72 (80.56%), Postives = 67/72 (93.06%), Query Frame = 1 

Query: 74  ASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKD 133
           +SMS+ GS+ SWTAKQNK FEKALAVYD+DTP+RW NVAKA+GGKT EEVKRHY+LL+KD
Sbjct: 4   SSMSSQGSS-SWTAKQNKDFEKALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVKD 63

Query: 134 VKQIESGEVPFP 146
           VKQIESG+VPFP
Sbjct: 64  VKQIESGKVPFP 74

[Close]
BLAST of Cp4.1LG15g05450 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 111.7 bits (278), Expect = 4.1e-25
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 1 

Query: 74  ASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKD 133
           +SMS+  S+GSWTAKQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LL++D
Sbjct: 4   SSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 134 VKQIESGEVPFP 146
           +  IE+G VPFP
Sbjct: 64  INSIENGHVPFP 74

[Close]
BLAST of Cp4.1LG15g05450 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 7.0e-25
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 1 

Query: 75  SMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDV 134
           SMS++GS GSWT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LL++D+
Sbjct: 5   SMSSYGS-GSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 135 KQIESGEVPFP 146
           + IE+G VPFP
Sbjct: 65  ESIENGHVPFP 74

[Close]
BLAST of Cp4.1LG15g05450 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-20
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MAS S   S   WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +L++
Sbjct: 1   MASNS-RSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 133 DVKQIESGEVPFP 146
           D+  IE+G VP P
Sbjct: 61  DLINIETGRVPLP 72

[Close]
BLAST of Cp4.1LG15g05450 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-20
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MAS S+  S+ SWT+KQNK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +L++
Sbjct: 1   MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 133 DVKQIESGEVPFP 146
           D+  IE   VP P
Sbjct: 61  DLMNIEQDLVPLP 72

[Close]
BLAST of Cp4.1LG15g05450 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-19
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MAS S   S  SWTA+++K FE ALA +D+DTP+RW  +A+A+GGK+ EEVKRHY+LLL+
Sbjct: 1   MASSSM--STSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLR 60

Query: 133 DVKQIESGEVPFP 146
           DV  IESG  P P
Sbjct: 61  DVNDIESGRYPQP 71

[Close]
BLAST of Cp4.1LG15g05450 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 9.8e-29
Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MASMSAHGS G WTAKQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1   MASMSAHGS-GVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 133 DVKQIESGEVPFPY 147
           DVK IESG+VPFPY
Sbjct: 61  DVKHIESGKVPFPY 73

[Close]
BLAST of Cp4.1LG15g05450 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 6.4e-28
Identity = 64/74 (86.49%), Postives = 71/74 (95.95%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MAS+SAHGS G WTAKQNKAFE+ALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1   MASLSAHGS-GVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 133 DVKQIESGEVPFPY 147
           DVK IESG+VPFPY
Sbjct: 61  DVKHIESGKVPFPY 73

[Close]
BLAST of Cp4.1LG15g05450 vs. NCBI nr
Match: gi|778725452|ref|XP_011658943.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 3.2e-27
Identity = 62/74 (83.78%), Postives = 70/74 (94.59%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MASMSAHGS+ +WTA +NKAFEKALA+YD+DTPERWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1   MASMSAHGSS-AWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 133 DVKQIESGEVPFPY 147
           DV  IESG++PFPY
Sbjct: 61  DVNHIESGQIPFPY 73

[Close]
BLAST of Cp4.1LG15g05450 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 5.4e-27
Identity = 62/74 (83.78%), Postives = 69/74 (93.24%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MASMS+HGS G+WT KQNKAFEKALAVYDQDTP+RWLNVAKA+GGKT EEVKRHY LL++
Sbjct: 1   MASMSSHGS-GTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 133 DVKQIESGEVPFPY 147
           DVK IESG+VPFPY
Sbjct: 61  DVKFIESGQVPFPY 73

[Close]
BLAST of Cp4.1LG15g05450 vs. NCBI nr
Match: gi|778725458|ref|XP_004151125.2| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 73  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 132
           MASMS+HGS G+WT  QNKAFEKALAVYDQDTP+RWLNVAKA+GGKT EEVKRHY LL++
Sbjct: 1   MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 133 DVKQIESGEVPFPY 147
           DVK IESG+VPFPY
Sbjct: 61  DVKFIESGQVPFPY 73

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g05450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RADL1_ARATH7.3e-2472.22Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RADL2_ARATH1.2e-2371.83Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
RAD_ANTMA5.2e-2265.22Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1[more]
RADL3_ARATH1.3e-2065.75Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1[more]
RADL6_ARATH1.9e-1964.38Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1[more]
BLAST of Cp4.1LG15g05450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K344_CUCSA4.4e-2886.49Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1[more]
A0A0A0K3K0_CUCSA2.2e-2783.78Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1[more]
A0A0A0K348_CUCSA1.9e-2682.43Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1[more]
W9QGR5_9ROSA1.3e-2478.87DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_018551 PE=4 SV=1[more]
A0A0D2RSV3_GOSRA1.3e-2480.56Uncharacterized protein OS=Gossypium raimondii GN=B456_005G244000 PE=4 SV=1[more]
BLAST of Cp4.1LG15g05450 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.14.1e-2572.22 RAD-like 1[more]
AT2G21650.17.0e-2571.83 Homeodomain-like superfamily protein[more]
AT1G75250.11.0e-2064.38 RAD-like 6[more]
AT1G19510.11.8e-2063.01 RAD-like 5[more]
AT2G18328.12.6e-1960.27 RAD-like 4[more]
BLAST of Cp4.1LG15g05450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092351|ref|XP_008447025.1|9.8e-2989.19PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
gi|449466805|ref|XP_004151116.1|6.4e-2886.49PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|778725452|ref|XP_011658943.1|3.2e-2783.78PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|659092346|ref|XP_008447024.1|5.4e-2783.78PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
gi|778725458|ref|XP_004151125.2|2.7e-2682.43PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017877Myb-like_dom
IPR009057Homeobox-like_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g05450.1Cp4.1LG15g05450.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 83..130
score: 2.
IPR001005SANT/Myb domainSMARTSM00717santcoord: 81..133
score: 3.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 84..137
score: 4.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 83..139
score: 5.85
IPR017877Myb-like domainPROFILEPS50090MYB_LIKEcoord: 77..131
score: 6
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 85..149
score: 2.6
NoneNo IPR availablePANTHERPTHR24078:SF177PROTEIN DNJ-23-RELATEDcoord: 85..149
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG15g05450Cp4.1LG02g07540Cucurbita pepo (Zucchini)cpecpeB264
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g05450Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g05450Cucurbita pepo (Zucchini)cpecpeB270
Cp4.1LG15g05450Cucurbita pepo (Zucchini)cpecpeB274
Cp4.1LG15g05450Cucumber (Gy14) v1cgycpeB0245
Cp4.1LG15g05450Cucumber (Gy14) v1cgycpeB0992
Cp4.1LG15g05450Cucurbita maxima (Rimu)cmacpeB119
Cp4.1LG15g05450Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g05450Cucurbita maxima (Rimu)cmacpeB561
Cp4.1LG15g05450Cucurbita maxima (Rimu)cmacpeB616
Cp4.1LG15g05450Cucurbita moschata (Rifu)cmocpeB096
Cp4.1LG15g05450Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g05450Cucurbita moschata (Rifu)cmocpeB514
Cp4.1LG15g05450Cucurbita moschata (Rifu)cmocpeB566
Cp4.1LG15g05450Wild cucumber (PI 183967)cpecpiB236
Cp4.1LG15g05450Cucumber (Chinese Long) v2cpecuB232
Cp4.1LG15g05450Bottle gourd (USVL1VR-Ls)cpelsiB195
Cp4.1LG15g05450Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g05450Watermelon (Charleston Gray)cpewcgB229
Cp4.1LG15g05450Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g05450Watermelon (97103) v1cpewmB268
Cp4.1LG15g05450Watermelon (97103) v1cpewmB270
Cp4.1LG15g05450Melon (DHL92) v3.5.1cpemeB210
Cp4.1LG15g05450Melon (DHL92) v3.5.1cpemeB224
Cp4.1LG15g05450Cucumber (Gy14) v2cgybcpeB185
Cp4.1LG15g05450Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g05450Melon (DHL92) v3.6.1cpemedB253
Cp4.1LG15g05450Melon (DHL92) v3.6.1cpemedB262
Cp4.1LG15g05450Silver-seed gourdcarcpeB0252
Cp4.1LG15g05450Silver-seed gourdcarcpeB0436
Cp4.1LG15g05450Silver-seed gourdcarcpeB1241
Cp4.1LG15g05450Cucumber (Chinese Long) v3cpecucB0289
Cp4.1LG15g05450Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g05450Wax gourdcpewgoB0316
Cp4.1LG15g05450Wax gourdcpewgoB0338