Cp4.1LG15g03000 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g03000
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAnkyrin repeat family protein, putative
LocationCp4.1LG15 : 3786033 .. 3786764 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGATATATTGGCAAAGTTTCTAACTTCATGCCCAAAATCAATTAAAGAATTGACCAATCTTAATGAGTCTGCTCTACATATTGCGGTTAAAAGTGAAGATATTGAATCGGTTAAAATCTTGCTAAAATGGATCCAACAAACTTGCATGGCCTCAATACTTGATTGGTGTAATGACGAAGGAAACAATGCCATGCATCTTGCGGCCCTTGGAAACAAAAATGAGGTCAGTATTAGAGGTTATTTTTAACACTTTGTGTATGACCATATGAAGAAAAGCTTGTCTTTGGTGCAGATGGTGAAGCTTTTCATGAACTTGGTGGATATCAAAGCAAAGAATTTGGAAGGCAAGACAGTAGAAGACATAATGAAAGAACATGGTCGTGTGGAAGACAAAGAGGTAAAAGAGTCGTTACATGTCTAAAGAGGATCGGAATGCCATATTTCAATACTTTGGCATTTGTTGCTTTAATGATAGAGATTTGTGTTCATCTTCCTTATGGGATTGGCTATGCTCTCCATTTGGTTCTCCCTTTGCTGATTTGCTACACATTTTGCAATGATTTTTGGGCTTACTTGGTCCAAAATTGGGTTGATTCGACAGAAAATGAAGGGAGATCTTCCGCTAAAGAAGCTTAGGAAACATGGTGGTCTCTTCATGCGCAGCATTAGCATGGAGAAAGAATTGACTCTAATAAGTGTGAACTTTGGTCGCAATGTTAGAGCTTAA

mRNA sequence

ATGGTTGATATATTGGCAAAGTTTCTAACTTCATGCCCAAAATCAATTAAAGAATTGACCAATCTTAATGAGTCTGCTCTACATATTGCGGTTAAAAGTGAAGATATTGAATCGGTTAAAATCTTGCTAAAATGGATCCAACAAACTTGCATGGCCTCAATACTTGATTGGTGTAATGACGAAGGAAACAATGCCATGCATCTTGCGGCCCTTGGAAACAAAAATGAGATGGTGAAGCTTTTCATGAACTTGGTGGATATCAAAGCAAAGAATTTGGAAGGCAAGACAGTAGAAGACATAATGAAAGAACATGGTCGTGTGGAAGACAAAGAGAAAATGAAGGGAGATCTTCCGCTAAAGAAGCTTAGGAAACATGGTGGTCTCTTCATGCGCAGCATTAGCATGGAGAAAGAATTGACTCTAATAAGTGTGAACTTTGGTCGCAATGTTAGAGCTTAA

Coding sequence (CDS)

ATGGTTGATATATTGGCAAAGTTTCTAACTTCATGCCCAAAATCAATTAAAGAATTGACCAATCTTAATGAGTCTGCTCTACATATTGCGGTTAAAAGTGAAGATATTGAATCGGTTAAAATCTTGCTAAAATGGATCCAACAAACTTGCATGGCCTCAATACTTGATTGGTGTAATGACGAAGGAAACAATGCCATGCATCTTGCGGCCCTTGGAAACAAAAATGAGATGGTGAAGCTTTTCATGAACTTGGTGGATATCAAAGCAAAGAATTTGGAAGGCAAGACAGTAGAAGACATAATGAAAGAACATGGTCGTGTGGAAGACAAAGAGAAAATGAAGGGAGATCTTCCGCTAAAGAAGCTTAGGAAACATGGTGGTCTCTTCATGCGCAGCATTAGCATGGAGAAAGAATTGACTCTAATAAGTGTGAACTTTGGTCGCAATGTTAGAGCTTAA

Protein sequence

MVDILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQTCMASILDWCNDEGNNAMHLAALGNKNEMVKLFMNLVDIKAKNLEGKTVEDIMKEHGRVEDKEKMKGDLPLKKLRKHGGLFMRSISMEKELTLISVNFGRNVRA
Homology
[Close]
BLAST of Cp4.1LG15g03000 vs. TrEMBL
Match: W9S5L9_9ROSA (Ankyrin repeat-containing protein OS=Morus notabilis GN=L484_023405 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.8e-19
Identity = 47/102 (46.08%), Postives = 73/102 (71.57%), Query Frame = 1 

Query: 2   VDILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQTCMASILDWCNDE 61
           +D+LA+FL  CPKSI++LT   E+ALH+AVKS+ +E++K+LL W++      +L+W +DE
Sbjct: 118 IDLLAEFLLVCPKSIQDLTIRKETALHVAVKSDKLEALKVLLGWLEHVGKKGVLNWGDDE 177

Query: 62  GNNAMHLAALGNKNEMVKLFMNLVDIKAKNLEGKTVEDIMKE 104
           GN  +H+AA  N+ +MV+L ++ +D+ AKN  G T  DI  E
Sbjct: 178 GNTILHIAAARNQTKMVRLIIDRIDLNAKNSAGLTALDISPE 219

[Close]
BLAST of Cp4.1LG15g03000 vs. TrEMBL
Match: W9SNY8_9ROSA (Phytosulfokine receptor 1 OS=Morus notabilis GN=L484_002271 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.2e-19
Identity = 50/111 (45.05%), Postives = 78/111 (70.27%), Query Frame = 1 

Query: 1   MVDILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQTCMASILDWCND 60
           MVD+LAKFL+ CPK+I+ LT   E+ALHIAVK++++E+VK+LL W+       +L   +D
Sbjct: 118 MVDVLAKFLSVCPKAIQILTIRKETALHIAVKNDNLEAVKLLLGWLDHVDKDVVLKLADD 177

Query: 61  EGNNAMHLAALGNKNEMVKLFMNLVDIKAKNLEGKTVEDIMKEHGRVEDKE 112
           EGN  +H+A   N+ EMV+LF+N  D+ AKNL G T  D+++   ++ +++
Sbjct: 178 EGNTVLHMATSKNQIEMVRLFINGADVNAKNLVGLTALDVLENQKQLANEK 228

[Close]
BLAST of Cp4.1LG15g03000 vs. TrEMBL
Match: M4D868_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-18
Identity = 46/100 (46.00%), Postives = 72/100 (72.00%), Query Frame = 1 

Query: 3   DILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQTCMASILDWCNDEG 62
           D+L++FL +CP S+++LT   E+A+HIAVKS    + K+LL W+++     ILDW +++G
Sbjct: 210 DLLSEFLFACPSSVEDLTIKCETAVHIAVKSHQFMAFKVLLGWVRRVNKEEILDWKDEDG 269

Query: 63  NNAMHLAALGNKNEMVKLFMNLVDIKAKNLEGKTVEDIMK 103
           N   H+AA  N+ E++KL  N V++KAKNL+GKT  DI++
Sbjct: 270 NTVFHIAASMNQTEVMKLLRNTVNVKAKNLDGKTAMDILE 309

[Close]
BLAST of Cp4.1LG15g03000 vs. TrEMBL
Match: V4N0D7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10028682mg PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-18
Identity = 44/102 (43.14%), Postives = 73/102 (71.57%), Query Frame = 1 

Query: 3   DILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQTCMASILDWCNDEG 62
           ++L++FL +CP SI++LT   E+A+HIAVK++ + + K+L  W+++     ILDW +++G
Sbjct: 149 ELLSEFLFACPSSIEDLTTKCETAVHIAVKNQQLLAFKVLYGWVKRENRKEILDWKDEDG 208

Query: 63  NNAMHLAALGNKNEMVKLFMNLVDIKAKNLEGKTVEDIMKEH 105
           N   H+AA  N+ E++KL   +V +KAKNL+GKT  DI++ H
Sbjct: 209 NTVFHIAASMNQTEVIKLLRKIVKVKAKNLDGKTAMDILQTH 250

[Close]
BLAST of Cp4.1LG15g03000 vs. TrEMBL
Match: A0A087GA64_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G291000 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 44/101 (43.56%), Postives = 73/101 (72.28%), Query Frame = 1 

Query: 4   ILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQTCMASILDWCNDEGN 63
           +L++FL +CP S+++LT   ESA+H+AVK+  IE++K+LL W+++     IL+W +++GN
Sbjct: 136 LLSEFLFACPSSVEDLTIKCESAVHVAVKNHQIEALKVLLGWLKRENREDILEWKDEDGN 195

Query: 64  NAMHLAALGNKNEMVKLFMNLVDIKAKNLEGKTVEDIMKEH 105
             +H+AA  N+ E++KL    V + AKNL+GKT  DI++ H
Sbjct: 196 TVLHIAASINQTEVMKLLRKTVKVNAKNLDGKTAMDILQTH 236

[Close]
BLAST of Cp4.1LG15g03000 vs. TAIR10
Match: AT4G11000.1 (AT4G11000.1 Ankyrin repeat family protein)

HSP 1 Score: 73.9 bits (180), Expect = 9.3e-14
Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = 1 

Query: 7   KFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQTCMASILDWCNDEGNNAM 66
           + +T  P    +L     S LH+A+++  I++V  LL WI++     ILDW +++GN   
Sbjct: 92  ELMTLKPSLALKLNVSGFSPLHLALQNNHIQTV--LLGWIKRANRKEILDWKDEDGNTVF 151

Query: 67  HLAALGNKNEMVKLFMNLVDIKAKNLEGKTVEDIMKEH 105
           H+AAL N+ E++KL    V +KAKNL+GKT  DI++ H
Sbjct: 152 HIAALINQTEVMKLLRKTVKVKAKNLDGKTAMDILQTH 187

[Close]
BLAST of Cp4.1LG15g03000 vs. TAIR10
Match: AT5G54610.1 (AT5G54610.1 ankyrin)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10
Identity = 37/117 (31.62%), Postives = 64/117 (54.70%), Query Frame = 1 

Query: 2   VDILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQ-----TCMASILD 61
           VD+L  FL +CP+SIK++    E+ LHI + ++  E +K+L  W+Q+          +L+
Sbjct: 118 VDLLTDFLLACPESIKDVNVNGETILHITIMNDKYEQLKVLTGWMQKMRDSDDVFIDVLN 177

Query: 62  WCNDEGNNAMHLAALGNKNEMVKLFMNL--VDIKAKNLEGKTVEDIMKEHGRVEDKE 112
             +  GN  +HLAA  N +++VK  +    +D   +N  G T  D+++  G   +KE
Sbjct: 178 RRDRGGNTVLHLAAYENNDKVVKQLVKCLSLDRNIQNKSGMTALDVLRARGSHMNKE 234

[Close]
BLAST of Cp4.1LG15g03000 vs. TAIR10
Match: AT4G10720.1 (AT4G10720.1 Ankyrin repeat family protein)

HSP 1 Score: 60.8 bits (146), Expect = 8.1e-10
Identity = 47/152 (30.92%), Postives = 81/152 (53.29%), Query Frame = 1 

Query: 3   DILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQ---QTCMASI----L 62
           D++ +FL +CP  IK+     E+ALHIAV ++  E +++LL W+Q   QT   S+    L
Sbjct: 119 DLMTEFLLACPGCIKDANVNGETALHIAVSNDRYEELEVLLGWVQRLRQTDAESLEMQFL 178

Query: 63  DWCNDEGNNAMHLAALGNKNEMVKLFM--NLVDIKAKNLEGKTVEDIM---KEHGRVEDK 122
           +  + +GN A+H+AA  N+ + VK+ +  + V+    N  G T  DI+   ++H    + 
Sbjct: 179 NKRDQDGNTALHIAAYQNRFKAVKILVKCSAVNRNIHNRTGLTALDILHNQRDHHANSNI 238

Query: 123 EKMKGDLPLKKLRKHGGLFMRSISMEKELTLI 143
           E +        +RK GG    S+   K+++ I
Sbjct: 239 ENI--------IRKWGGKSGNSLPKSKKVSEI 262

[Close]
BLAST of Cp4.1LG15g03000 vs. TAIR10
Match: AT5G54620.1 (AT5G54620.1 Ankyrin repeat family protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 38/113 (33.63%), Postives = 66/113 (58.41%), Query Frame = 1 

Query: 3   DILAKFLTSCPKSIKELTNLN-ESALHIAVKSEDIESVKILLKWIQQ-------TCMASI 62
           ++L +FL +CP+SIK+ TN+N E+ALHIAV ++  E +K+L  WI +       +    +
Sbjct: 119 NLLTEFLLACPESIKD-TNVNGETALHIAVMNDRYEELKVLTGWIHRLHKSDAASTEIHV 178

Query: 63  LDWCNDEGNNAMHLAALGNKNEMVKLFMNLVDIK--AKNLEGKTVEDIMKEHG 106
           L+  + +GN  +HLAA  N ++  K  +  + +    +N  G T  DI++ +G
Sbjct: 179 LNKRDRDGNTILHLAAYKNNHKAFKELLKCISLNRDIQNKGGMTALDILRTNG 230

[Close]
BLAST of Cp4.1LG15g03000 vs. TAIR10
Match: AT5G15500.2 (AT5G15500.2 Ankyrin repeat family protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 43/149 (28.86%), Postives = 76/149 (51.01%), Query Frame = 1 

Query: 2   VDILAKFLTSCPKSIKELTNLNESALHIAVKS----EDIESVKILLKWIQQTCM------ 61
           +D++++F   CP+SI +     E+ALHIAV +    E +  +K+L+ WI + C       
Sbjct: 119 IDLMSEFFLGCPESIVDANVNGENALHIAVNNYDQREGLSVLKVLMGWILRLCQKDAEWI 178

Query: 62  -ASILDWCNDEGNNAMHLAALGNKNEMVKLFM--NLVDIKAKNLEGKTVEDIMKEHGRVE 121
              +++  + +GN  +HLAA     + +KL +  + +++  +N  G TV DI   H   E
Sbjct: 179 ETRVINRRDKDGNTPLHLAAYEINRQAMKLLLESSKINVNIENKNGLTVFDIAVLHNNRE 238

Query: 122 DKEKMKGDLPLKKLRKHGGLFMRSISMEK 138
            +  +K         +HGG   RS+S+ K
Sbjct: 239 IERMVK---------RHGG--KRSVSLVK 256

[Close]
BLAST of Cp4.1LG15g03000 vs. NCBI nr
Match: gi|703153015|ref|XP_010110570.1| (Ankyrin repeat-containing protein [Morus notabilis])

HSP 1 Score: 102.4 bits (254), Expect = 6.9e-19
Identity = 47/102 (46.08%), Postives = 73/102 (71.57%), Query Frame = 1 

Query: 2   VDILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQTCMASILDWCNDE 61
           +D+LA+FL  CPKSI++LT   E+ALH+AVKS+ +E++K+LL W++      +L+W +DE
Sbjct: 118 IDLLAEFLLVCPKSIQDLTIRKETALHVAVKSDKLEALKVLLGWLEHVGKKGVLNWGDDE 177

Query: 62  GNNAMHLAALGNKNEMVKLFMNLVDIKAKNLEGKTVEDIMKE 104
           GN  +H+AA  N+ +MV+L ++ +D+ AKN  G T  DI  E
Sbjct: 178 GNTILHIAAARNQTKMVRLIIDRIDLNAKNSAGLTALDISPE 219

[Close]
BLAST of Cp4.1LG15g03000 vs. NCBI nr
Match: gi|703086159|ref|XP_010092930.1| (Phytosulfokine receptor 1 [Morus notabilis])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 50/111 (45.05%), Postives = 78/111 (70.27%), Query Frame = 1 

Query: 1   MVDILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQTCMASILDWCND 60
           MVD+LAKFL+ CPK+I+ LT   E+ALHIAVK++++E+VK+LL W+       +L   +D
Sbjct: 118 MVDVLAKFLSVCPKAIQILTIRKETALHIAVKNDNLEAVKLLLGWLDHVDKDVVLKLADD 177

Query: 61  EGNNAMHLAALGNKNEMVKLFMNLVDIKAKNLEGKTVEDIMKEHGRVEDKE 112
           EGN  +H+A   N+ EMV+LF+N  D+ AKNL G T  D+++   ++ +++
Sbjct: 178 EGNTVLHMATSKNQIEMVRLFINGADVNAKNLVGLTALDVLENQKQLANEK 228

[Close]
BLAST of Cp4.1LG15g03000 vs. NCBI nr
Match: gi|923552756|ref|XP_013737192.1| (PREDICTED: uncharacterized protein LOC106440138 isoform X1 [Brassica napus])

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 46/100 (46.00%), Postives = 72/100 (72.00%), Query Frame = 1 

Query: 3   DILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQTCMASILDWCNDEG 62
           D+L++FL +CP S+++LT   E+A+HIAVKS    + K+LL W+++     ILDW +++G
Sbjct: 126 DLLSEFLFACPSSVEDLTIKCETAVHIAVKSHQFMAFKVLLGWVRRVNKEEILDWKDEDG 185

Query: 63  NNAMHLAALGNKNEMVKLFMNLVDIKAKNLEGKTVEDIMK 103
           N   H+AA  N+ E++KL  N V++KAKNL+GKT  DI++
Sbjct: 186 NTVFHIAASMNQTELMKLLRNTVNVKAKNLDGKTAMDILE 225

[Close]
BLAST of Cp4.1LG15g03000 vs. NCBI nr
Match: gi|727530067|ref|XP_010440064.1| (PREDICTED: uncharacterized protein LOC104723395 [Camelina sativa])

HSP 1 Score: 100.1 bits (248), Expect = 3.4e-18
Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 1 

Query: 3   DILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQTCMASILDWCNDEG 62
           D+L++FL +CP S+++LT   E+A+HIAVK+    + K+LL W+Q+     ILDW +++G
Sbjct: 122 DLLSEFLFACPSSVEDLTIKCETAVHIAVKNSQFLAFKVLLGWVQRAHREEILDWKDEDG 181

Query: 63  NNAMHLAALGNKNEMVKLFMNLVDIKAKNLEGKTVEDIMKEH 105
           N   H+AAL N+ E++KL    V +KA+NL GKT  DI++ H
Sbjct: 182 NTVFHIAALTNQTEVMKLLRRTVKVKARNLAGKTAMDILQTH 223

[Close]
BLAST of Cp4.1LG15g03000 vs. NCBI nr
Match: gi|685292329|ref|XP_009137107.1| (PREDICTED: ankyrin-1-like [Brassica rapa])

HSP 1 Score: 100.1 bits (248), Expect = 3.4e-18
Identity = 46/100 (46.00%), Postives = 72/100 (72.00%), Query Frame = 1 

Query: 3   DILAKFLTSCPKSIKELTNLNESALHIAVKSEDIESVKILLKWIQQTCMASILDWCNDEG 62
           D+L++FL +CP S+++LT   E+A+HIAVKS    + K+LL W+++     ILDW +++G
Sbjct: 126 DLLSEFLFACPSSVEDLTIKCETAVHIAVKSHQFMAFKVLLGWVRRVNKEEILDWKDEDG 185

Query: 63  NNAMHLAALGNKNEMVKLFMNLVDIKAKNLEGKTVEDIMK 103
           N   H+AA  N+ E++KL  N V++KAKNL+GKT  DI++
Sbjct: 186 NTVFHIAASMNQTEVMKLLRNTVNVKAKNLDGKTAMDILE 225

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g03000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g03000 vs. TrEMBL
Match NameE-valueIdentityDescription
W9S5L9_9ROSA4.8e-1946.08Ankyrin repeat-containing protein OS=Morus notabilis GN=L484_023405 PE=4 SV=1[more]
W9SNY8_9ROSA8.2e-1945.05Phytosulfokine receptor 1 OS=Morus notabilis GN=L484_002271 PE=4 SV=1[more]
M4D868_BRARP2.4e-1846.00Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
V4N0D7_EUTSA4.1e-1843.14Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10028682mg PE=4 SV=1[more]
A0A087GA64_ARAAL1.2e-1743.56Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G291000 PE=4 SV=1[more]
BLAST of Cp4.1LG15g03000 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G11000.19.3e-1439.80 Ankyrin repeat family protein[more]
AT5G54610.11.3e-1031.62 ankyrin[more]
AT4G10720.18.1e-1030.92 Ankyrin repeat family protein[more]
AT5G54620.11.4e-0933.63 Ankyrin repeat family protein[more]
AT5G15500.21.4e-0928.86 Ankyrin repeat family protein[more]
BLAST of Cp4.1LG15g03000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703153015|ref|XP_010110570.1|6.9e-1946.08Ankyrin repeat-containing protein [Morus notabilis][more]
gi|703086159|ref|XP_010092930.1|1.2e-1845.05Phytosulfokine receptor 1 [Morus notabilis][more]
gi|923552756|ref|XP_013737192.1|2.6e-1846.00PREDICTED: uncharacterized protein LOC106440138 isoform X1 [Brassica napus][more]
gi|727530067|ref|XP_010440064.1|3.4e-1845.10PREDICTED: uncharacterized protein LOC104723395 [Camelina sativa][more]
gi|685292329|ref|XP_009137107.1|3.4e-1846.00PREDICTED: ankyrin-1-like [Brassica rapa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g03000.1Cp4.1LG15g03000.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020683Ankyrin repeat-containing domainGENE3DG3DSA:1.25.40.20coord: 6..107
score: 2.4
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 13..90
score: 2.
IPR020683Ankyrin repeat-containing domainPROFILEPS50297ANK_REP_REGIONcoord: 1..83
score: 10
IPR020683Ankyrin repeat-containing domainunknownSSF48403Ankyrin repeatcoord: 6..108
score: 3.31
NoneNo IPR availablePANTHERPTHR24128FAMILY NOT NAMEDcoord: 2..146
score: 2.0
NoneNo IPR availablePANTHERPTHR24128:SF24ANKYRIN REPEAT FAMILY PROTEIN-RELATEDcoord: 2..146
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g03000Bhi05G000412Wax gourdcpewgoB0320
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g03000Cucurbita pepo (Zucchini)cpecpeB276
Cp4.1LG15g03000Cucumber (Gy14) v1cgycpeB0820
Cp4.1LG15g03000Cucumber (Gy14) v1cgycpeB0818
Cp4.1LG15g03000Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g03000Cucurbita maxima (Rimu)cmacpeB618
Cp4.1LG15g03000Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g03000Cucurbita moschata (Rifu)cmocpeB569
Cp4.1LG15g03000Wild cucumber (PI 183967)cpecpiB244
Cp4.1LG15g03000Cucumber (Chinese Long) v2cpecuB240
Cp4.1LG15g03000Cucumber (Chinese Long) v2cpecuB246
Cp4.1LG15g03000Bottle gourd (USVL1VR-Ls)cpelsiB212
Cp4.1LG15g03000Watermelon (Charleston Gray)cpewcgB217
Cp4.1LG15g03000Watermelon (97103) v1cpewmB236
Cp4.1LG15g03000Melon (DHL92) v3.5.1cpemeB230
Cp4.1LG15g03000Melon (DHL92) v3.5.1cpemeB233
Cp4.1LG15g03000Cucumber (Gy14) v2cgybcpeB333
Cp4.1LG15g03000Cucumber (Gy14) v2cgybcpeB339
Cp4.1LG15g03000Melon (DHL92) v3.6.1cpemedB269
Cp4.1LG15g03000Melon (DHL92) v3.6.1cpemedB272
Cp4.1LG15g03000Silver-seed gourdcarcpeB0303
Cp4.1LG15g03000Silver-seed gourdcarcpeB1095
Cp4.1LG15g03000Cucumber (Chinese Long) v3cpecucB0299
Cp4.1LG15g03000Cucumber (Chinese Long) v3cpecucB0306